MGE detailed information
MGE type: Prophage MGE length: 68268 bp
Accession: NZ_CP075465 Location: 3580568..3648835 Organism: Escherichia coli strain NT1N34 Replicon: chromosome
Accession: NZ_CP075465 Location: 3580568..3648835 Organism: Escherichia coli strain NT1N34 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGI31_RS17225 (3578790) | 3578790..3579770 | - | 981 | WP_214455430.1 | IS5-like element ISKpn26 family transposase | - |
| IGI31_RS17230 (3579974) | 3579974..3580246 | - | 273 | WP_001547725.1 | hypothetical protein | - |
| IGI31_RS17235 (3580262) | 3580262..3580498 | - | 237 | WP_024195749.1 | hypothetical protein | - |
| IGI31_RS17240 (3580568) | 3580568..3581662 | - | 1095 | WP_059239969.1 | hypothetical protein ; Integrase | Integrase |
| IGI31_RS17245 (3581730) | 3581730..3582427 | + | 698 | WP_225907796.1 | IS1 family transposase IS1G | Transposase |
| IGI31_RS17250 (3582729) | 3582729..3582923 | + | 195 | WP_015060486.1 | hypothetical protein | - |
| IGI31_RS17255 (3583115) | 3583115..3583366 | - | 252 | Protein_3395 | IS200/IS605 family transposase | - |
| IGI31_RS17260 (3583422) | 3583422..3584119 | + | 698 | WP_225907796.1 | IS1 family transposase IS1G | Transposase |
| IGI31_RS17265 (3584180) | 3584180..3585147 | + | 968 | Protein_3397 | IS5 family transposase IS903 | Transposase |
| IGI31_RS17270 (3585263) | 3585263..3585826 | - | 564 | WP_196041852.1 | inovirus-type Gp2 protein | - |
| IGI31_RS17275 (3586714) | 3586714..3588147 | - | 1434 | WP_193107603.1 | YfjI family protein | - |
| IGI31_RS17280 (3588399) | 3588399..3588623 | - | 225 | Protein_3400 | DUF3987 domain-containing protein | - |
| IGI31_RS17285 (3588729) | 3588729..3588956 | - | 228 | WP_000266640.1 | AlpA family phage regulatory protein | - |
| IGI31_RS17290 (3589648) | 3589648..3591285 | + | 1638 | WP_039025855.1 | hypothetical protein | - |
| IGI31_RS17295 (3591372) | 3591372..3591968 | - | 597 | WP_047643993.1 | hypothetical protein | - |
| IGI31_RS17305 (3592469) | 3592469..3593722 | - | 1254 | WP_130061399.1 | glutamate-5-semialdehyde dehydrogenase | - |
| IGI31_RS17310 (3593734) | 3593734..3594837 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| IGI31_RS17315 (3595125) | 3595125..3596180 | + | 1056 | WP_000749893.1 | phosphoporin PhoE | - |
| IGI31_RS17320 (3596219) | 3596219..3596620 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3597338) | 3597338..3597418 | - | 81 | NuclAT_8 | - | - |
| - (3597338) | 3597338..3597418 | - | 81 | NuclAT_8 | - | - |
| - (3597338) | 3597338..3597418 | - | 81 | NuclAT_8 | - | - |
| - (3597338) | 3597338..3597418 | - | 81 | NuclAT_8 | - | - |
| IGI31_RS17325 (3596678) | 3596678..3597922 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| IGI31_RS17330 (3598014) | 3598014..3598472 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| IGI31_RS17335 (3598733) | 3598733..3600190 | + | 1458 | WP_001293016.1 | cytosol nonspecific dipeptidase | - |
| IGI31_RS17340 (3600247) | 3600247..3600768 | - | 522 | Protein_3411 | peptide chain release factor H | - |
| IGI31_RS17345 (3600767) | 3600767..3600970 | - | 204 | Protein_3412 | RtcB family protein | - |
| IGI31_RS17350 (3601216) | 3601216..3601668 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| IGI31_RS17355 (3601678) | 3601678..3602076 | - | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| IGI31_RS17360 (3602079) | 3602079..3602372 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| IGI31_RS17365 (3602424) | 3602424..3603479 | - | 1056 | WP_193107709.1 | DNA polymerase IV | - |
| IGI31_RS17370 (3603550) | 3603550..3604335 | - | 786 | WP_000207587.1 | hypothetical protein | VF |
| IGI31_RS17375 (3604307) | 3604307..3606019 | + | 1713 | Protein_3418 | hypothetical protein | VF |
| IGI31_RS17380 (3606243) | 3606243..3606740 | - | 498 | WP_193107710.1 | REP-associated tyrosine transposase RayT | - |
| IGI31_RS17385 (3606916) | 3606916..3607689 | - | 774 | WP_015675129.1 | hypothetical protein | VF |
| IGI31_RS17390 (3607875) | 3607875..3608135 | + | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| IGI31_RS17395 (3608138) | 3608138..3608416 | + | 279 | WP_000615976.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| IGI31_RS17400 (3608572) | 3608572..3609312 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| IGI31_RS17405 (3609283) | 3609283..3610050 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| IGI31_RS17410 (3610256) | 3610256..3610834 | - | 579 | WP_000284050.1 | hypothetical protein | VF |
| IGI31_RS17415 (3611074) | 3611074..3613518 | + | 2445 | WP_000973083.1 | hypothetical protein | VF |
| IGI31_RS17420 (3613561) | 3613561..3614007 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| IGI31_RS17425 (3614188) | 3614188..3614958 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| IGI31_RS17430 (3614999) | 3614999..3616027 | - | 1029 | Protein_3429 | ISAs1 family transposase ISEc1 | Transposase |
| IGI31_RS17445 (3617166) | 3617166..3617897 | - | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| IGI31_RS17450 (3617962) | 3617962..3618429 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| IGI31_RS17455 (3618426) | 3618426..3619148 | - | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| IGI31_RS17460 (3619182) | 3619182..3619937 | + | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| IGI31_RS17465 (3620009) | 3620009..3621367 | + | 1359 | WP_000644685.1 | hypothetical protein | VF |
| IGI31_RS17470 (3621415) | 3621415..3622011 | - | 597 | Protein_3436 | methyltransferase domain-containing protein | - |
| IGI31_RS17475 (3622042) | 3622042..3622842 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| IGI31_RS17480 (3623083) | 3623083..3623997 | + | 915 | WP_000648572.1 | hypothetical protein | VF |
| IGI31_RS17485 (3623994) | 3623994..3624797 | - | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| IGI31_RS17520 (3630555) | 3630555..3631130 | - | 576 | WP_001140187.1 | hypothetical protein | VF |
| IGI31_RS17525 (3631318) | 3631318..3632349 | + | 1032 | WP_000593994.1 | hypothetical protein | VF |
| IGI31_RS17530 (3632342) | 3632342..3632995 | + | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| IGI31_RS17535 (3633035) | 3633035..3633850 | + | 816 | WP_000874226.1 | hypothetical protein | VF |
| IGI31_RS17540 (3633968) | 3633968..3634372 | + | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| IGI31_RS17545 (3634369) | 3634369..3635076 | + | 708 | WP_000094011.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| IGI31_RS17550 (3635187) | 3635187..3636905 | + | 1719 | WP_001260707.1 | proline--tRNA ligase | - |
| IGI31_RS17555 (3636958) | 3636958..3637782 | + | 825 | WP_001469748.1 | YaeF family permuted papain-like enzyme | - |
| IGI31_RS17560 (3637982) | 3637982..3638692 | - | 711 | WP_000239163.1 | envelope stress response activation lipoprotein NlpE | - |
| IGI31_RS17565 (3638706) | 3638706..3639128 | - | 423 | WP_000635537.1 | alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB | - |
| IGI31_RS17570 (3639125) | 3639125..3639670 | - | 546 | WP_193107661.1 | YaeQ family protein | - |
| IGI31_RS17575 (3639836) | 3639836..3640036 | + | 201 | WP_000417058.1 | YaeP family protein | - |
| IGI31_RS17580 (3640023) | 3640023..3640283 | + | 261 | WP_000062312.1 | Rho-binding antiterminator | - |
| IGI31_RS17585 (3640332) | 3640332..3641630 | - | 1299 | WP_032255368.1 | tRNA lysidine(34) synthetase TilS | - |
| IGI31_RS17590 (3641695) | 3641695..3642084 | - | 390 | WP_000901099.1 | VOC family protein | - |
| IGI31_RS17595 (3642141) | 3642141..3644282 | - | 2142 | WP_032255366.1 | lysine decarboxylase LdcC | - |
| IGI31_RS17600 (3644381) | 3644381..3645340 | - | 960 | WP_000055741.1 | acetyl-CoA carboxylase carboxyl transferase subunit alpha | - |
| IGI31_RS17605 (3645353) | 3645353..3648835 | - | 3483 | WP_001294757.1 | DNA polymerase III subunit alpha | - |
| IGI31_RS17610 (3648872) | 3648872..3649468 | - | 597 | WP_000569430.1 | ribonuclease HII | - |
| IGI31_RS17615 (3649465) | 3649465..3650613 | - | 1149 | WP_000139654.1 | lipid-A-disaccharide synthase | - |
| IGI31_RS17620 (3650613) | 3650613..3651401 | - | 789 | WP_000565966.1 | acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase | - |
| IGI31_RS17625 (3651405) | 3651405..3651860 | - | 456 | WP_000210739.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| IGI31_RS17630 (3651965) | 3651965..3652990 | - | 1026 | WP_001139279.1 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | - |
| IGI31_RS17635 (3652994) | 3652994..3653479 | - | 486 | WP_000758956.1 | molecular chaperone Skp | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|