MGE detailed information
MGE type: Prophage MGE length: 54153 bp
Accession: NZ_CP075169 Location: 4500910..4555062 Organism: Sodalis ligni strain dw23 Replicon: chromosome
Accession: NZ_CP075169 Location: 4500910..4555062 Organism: Sodalis ligni strain dw23 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTU79_RS21005 (GTU79_20990) | 4496673..4497326 | - | 654 | WP_203524609.1 | anti-sigma-E factor RseA | - |
| GTU79_RS21010 (GTU79_20995) | 4497355..4497930 | - | 576 | WP_132926545.1 | RNA polymerase sigma factor RpoE | - |
| GTU79_RS21015 (GTU79_21000) | 4498126..4498302 | + | 177 | WP_203524610.1 | hypothetical protein | - |
| GTU79_RS21020 (GTU79_21005) | 4498352..4499953 | + | 1602 | WP_203524611.1 | L-aspartate oxidase | - |
| GTU79_RS21025 (GTU79_21010) | 4500028..4500777 | - | 750 | WP_203524612.1 | methyltransferase | - |
| GTU79_RS21030 (GTU79_21015) | 4500910..4502253 | + | 1344 | WP_132926539.1 | ATP-dependent RNA helicase SrmB | - |
| GTU79_RS21035 (GTU79_21020) | 4502612..4502995 | - | 384 | WP_132926537.1 | autonomous glycyl radical cofactor GrcA | - |
| GTU79_RS21040 (GTU79_21025) | 4503340..4504021 | + | 682 | Protein_4170 | uracil-DNA glycosylase | - |
| GTU79_RS21045 (GTU79_21030) | 4504220..4504807 | - | 588 | WP_132928031.1 | nucleotide exchange factor GrpE | - |
| GTU79_RS21050 (GTU79_21035) | 4504991..4505869 | + | 879 | WP_203524613.1 | NAD(+) kinase | - |
| GTU79_RS21055 (GTU79_21040) | 4505957..4507666 | + | 1710 | WP_214513336.1 | hypothetical protein | VF |
| GTU79_RS21060 (GTU79_21045) | 4507708..4508079 | + | 372 | WP_214513337.1 | outer membrane protein assembly factor BamE | - |
| GTU79_RS21065 (GTU79_21050) | 4508262..4508546 | - | 285 | WP_203524616.1 | RnfH family protein | - |
| GTU79_RS21070 (GTU79_21055) | 4508539..4508973 | - | 435 | WP_132926525.1 | SRPBCC family protein | - |
| GTU79_RS21075 (GTU79_21060) | 4509134..4509616 | + | 483 | WP_203524617.1 | SsrA-binding protein SmpB | - |
| GTU79_RS21085 (GTU79_21070) | 4510230..4510616 | - | 387 | WP_203524618.1 | S24 family peptidase | - |
| GTU79_RS21095 (GTU79_21080) | 4512395..4513285 | - | 891 | WP_214513339.1 | hypothetical protein | - |
| GTU79_RS21100 (GTU79_21085) | 4513338..4513934 | - | 597 | WP_203524622.1 | YmfQ family protein | - |
| GTU79_RS21105 (GTU79_21090) | 4513931..4515073 | - | 1143 | WP_203524623.1 | baseplate J/gp47 family protein | - |
| GTU79_RS21110 (GTU79_21095) | 4515077..4515511 | - | 435 | WP_203524624.1 | phage GP46 family protein | - |
| GTU79_RS21115 (GTU79_21100) | 4515508..4516101 | - | 594 | WP_253073388.1 | phage baseplate assembly protein | - |
| GTU79_RS21120 (GTU79_21105) | 4516091..4517170 | - | 1080 | WP_203524625.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| GTU79_RS21125 (GTU79_21110) | 4517167..4518571 | - | 1405 | Protein_4185 | DNA circularization N-terminal domain-containing protein | - |
| GTU79_RS21130 (GTU79_21115) | 4518630..4520546 | - | 1917 | WP_203524627.1 | hypothetical protein | - |
| GTU79_RS21135 (GTU79_21120) | 4520664..4520963 | - | 300 | WP_203524628.1 | phage tail assembly protein | - |
| GTU79_RS21140 (GTU79_21125) | 4520966..4521334 | - | 369 | WP_203524629.1 | phage tail tube protein | - |
| GTU79_RS21145 (GTU79_21130) | 4521344..4522834 | - | 1491 | WP_203524630.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| GTU79_RS21150 (GTU79_21135) | 4522834..4523055 | - | 222 | WP_203524631.1 | DUF2635 domain-containing protein | - |
| GTU79_RS21155 (GTU79_21140) | 4523070..4523615 | - | 546 | WP_203524632.1 | ATP-binding protein | - |
| GTU79_RS21160 (GTU79_21145) | 4523612..4523944 | - | 333 | WP_203524633.1 | hypothetical protein | - |
| GTU79_RS21165 (GTU79_21150) | 4523947..4524207 | - | 261 | WP_203524634.1 | hypothetical protein | - |
| GTU79_RS21170 (GTU79_21155) | 4524207..4525253 | - | 1047 | WP_203524635.1 | major capsid protein | - |
| GTU79_RS21175 (GTU79_21160) | 4525333..4525743 | - | 411 | WP_203524636.1 | head decoration protein | - |
| GTU79_RS21180 (GTU79_21165) | 4525743..4526300 | - | 558 | WP_203524637.1 | hypothetical protein | - |
| GTU79_RS21185 (GTU79_21170) | 4526303..4527158 | - | 856 | Protein_4197 | S49 family peptidase | - |
| GTU79_RS21190 (GTU79_21175) | 4527158..4528798 | - | 1641 | WP_203524638.1 | phage portal protein | - |
| GTU79_RS21195 (GTU79_21180) | 4528798..4529058 | - | 261 | WP_203524639.1 | gpW family head-tail joining protein | - |
| GTU79_RS21200 (GTU79_21185) | 4529069..4531048 | - | 1980 | WP_253073686.1 | phage terminase large subunit family protein | - |
| GTU79_RS21205 (GTU79_21190) | 4531020..4531631 | - | 612 | WP_203524640.1 | RNA polymerase subunit sigma-70 | - |
| GTU79_RS21210 (GTU79_21195) | 4531750..4532400 | - | 651 | WP_203524641.1 | hypothetical protein | - |
| GTU79_RS21215 (GTU79_21200) | 4532910..4533158 | - | 249 | WP_203524642.1 | hypothetical protein | - |
| GTU79_RS21220 (GTU79_21205) | 4533173..4533487 | - | 315 | WP_203524643.1 | hypothetical protein | - |
| GTU79_RS21225 (GTU79_21210) | 4533498..4534082 | - | 585 | WP_203524644.1 | hypothetical protein | VF |
| GTU79_RS21230 (GTU79_21215) | 4534079..4534288 | - | 210 | WP_203524645.1 | hypothetical protein | - |
| GTU79_RS21235 (GTU79_21220) | 4534300..4534577 | - | 278 | Protein_4207 | hypothetical protein | - |
| GTU79_RS21240 (GTU79_21225) | 4534688..4535104 | - | 417 | WP_203524647.1 | hypothetical protein | - |
| GTU79_RS21245 (GTU79_21230) | 4535101..4535595 | - | 495 | WP_275956903.1 | lysozyme | - |
| GTU79_RS21250 (GTU79_21235) | 4535595..4535837 | - | 243 | WP_203524648.1 | phage holin | - |
| GTU79_RS30710 | 4536310..4536840 | - | 531 | WP_253073389.1 | hypothetical protein | - |
| GTU79_RS21260 (GTU79_21245) | 4536951..4537358 | - | 408 | WP_203524649.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| GTU79_RS21265 (GTU79_21250) | 4537411..4537584 | - | 174 | WP_203524650.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| GTU79_RS21270 (GTU79_21255) | 4537726..4538166 | - | 441 | WP_203524651.1 | antiterminator Q family protein | - |
| GTU79_RS21275 (GTU79_21260) | 4538175..4539185 | - | 1011 | WP_203524652.1 | DUF968 domain-containing protein | - |
| GTU79_RS21280 (GTU79_21265) | 4539182..4539862 | - | 681 | WP_203524653.1 | DNA-binding protein | - |
| GTU79_RS21285 (GTU79_21270) | 4539855..4540244 | - | 390 | WP_203524654.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GTU79_RS21290 (GTU79_21275) | 4540241..4542196 | - | 1956 | WP_203524655.1 | DNA cytosine methyltransferase | - |
| GTU79_RS21295 (GTU79_21280) | 4542193..4543056 | - | 864 | WP_203524656.1 | phage N-6-adenine-methyltransferase | - |
| GTU79_RS21300 (GTU79_21285) | 4543053..4544060 | - | 1008 | WP_203524657.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| GTU79_RS21305 (GTU79_21290) | 4544057..4544302 | - | 246 | WP_203524658.1 | PerC family transcriptional regulator | - |
| GTU79_RS21310 (GTU79_21295) | 4544299..4545357 | - | 1059 | WP_203524659.1 | conserved phage C-terminal domain-containing protein | - |
| GTU79_RS21315 (GTU79_21300) | 4545354..4545530 | - | 177 | WP_203524660.1 | DUF4222 domain-containing protein | - |
| GTU79_RS21320 (GTU79_21305) | 4545686..4546231 | - | 546 | WP_203524661.1 | YmfL family putative regulatory protein | - |
| GTU79_RS21325 (GTU79_21310) | 4546242..4546505 | - | 264 | WP_203524662.1 | helix-turn-helix domain-containing protein | - |
| GTU79_RS21330 (GTU79_21315) | 4546626..4547096 | + | 471 | WP_203524663.1 | hypothetical protein | - |
| GTU79_RS21335 (GTU79_21320) | 4547641..4547943 | + | 303 | WP_214513340.1 | hemolysin XhlA | - |
| GTU79_RS21340 (GTU79_21325) | 4548260..4548568 | + | 309 | WP_203524666.1 | hypothetical protein | - |
| GTU79_RS21345 (GTU79_21330) | 4549401..4549772 | + | 372 | WP_203524667.1 | hypothetical protein | - |
| GTU79_RS21350 (GTU79_21335) | 4549808..4550633 | + | 826 | Protein_4230 | DUF2303 family protein | - |
| GTU79_RS21355 (GTU79_21340) | 4550726..4551256 | + | 531 | WP_203524669.1 | HD family hydrolase | - |
| GTU79_RS21360 (GTU79_21345) | 4551253..4552275 | + | 1023 | WP_203524670.1 | hypothetical protein | - |
| GTU79_RS21365 (GTU79_21350) | 4552275..4552628 | + | 354 | WP_203524671.1 | hypothetical protein | - |
| GTU79_RS21370 (GTU79_21355) | 4552926..4553108 | + | 183 | WP_214513341.1 | hypothetical protein | - |
| GTU79_RS21375 (GTU79_21360) | 4553105..4553431 | + | 327 | WP_203524673.1 | hypothetical protein | - |
| GTU79_RS21380 (GTU79_21365) | 4553723..4553926 | + | 204 | WP_203524674.1 | excisionase | - |
| GTU79_RS21385 (GTU79_21370) | 4553890..4555062 | + | 1173 | WP_203524675.1 | hypothetical protein ; Integrase | Integrase |
| GTU79_RS21390 (GTU79_21375) | 4555387..4555677 | + | 291 | Protein_4238 | integrase arm-type DNA-binding domain-containing protein | - |
| GTU79_RS21395 (GTU79_21380) | 4555909..4556160 | + | 252 | WP_203524676.1 | prevent-host-death protein | - |
| GTU79_RS21400 (GTU79_21385) | 4556150..4556431 | + | 282 | WP_214513342.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GTU79_RS30715 | 4556643..4556936 | + | 294 | Protein_4241 | hypothetical protein | - |
| GTU79_RS30720 | 4556958..4557131 | + | 174 | WP_253073390.1 | hypothetical protein | - |
| GTU79_RS30725 | 4557136..4557276 | + | 141 | WP_253073391.1 | hypothetical protein | - |
| GTU79_RS21415 (GTU79_21400) | 4557379..4557644 | - | 266 | Protein_4244 | hypothetical protein | - |
| GTU79_RS21420 (GTU79_21405) | 4558122..4558436 | + | 315 | WP_214513343.1 | hypothetical protein | - |
| GTU79_RS21425 (GTU79_21410) | 4558727..4559347 | + | 621 | WP_203524773.1 | DapH/DapD/GlmU-related protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|