MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 58432 bp
Accession: NZ_CP075169 Location: 3595716..3654147 Organism: Sodalis ligni strain dw23 Replicon: chromosome
Accession: NZ_CP075169 Location: 3595716..3654147 Organism: Sodalis ligni strain dw23 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTU79_RS16700 (GTU79_16690) | 3591323..3591698 | - | 376 | Protein_3300 | hypothetical protein | - |
| GTU79_RS16705 (GTU79_16695) | 3592363..3593052 | - | 690 | WP_253073317.1 | cation diffusion facilitator family transporter | - |
| GTU79_RS16710 (GTU79_16700) | 3593387..3593767 | - | 381 | WP_203521142.1 | S24 family peptidase | - |
| GTU79_RS31015 | 3594071..3594196 | + | 126 | WP_275956900.1 | hypothetical protein | - |
| GTU79_RS16720 (GTU79_16710) | 3594709..3595517 | + | 809 | Protein_3304 | DgsA anti-repressor MtfA | - |
| GTU79_RS16730 (GTU79_16720) | 3595899..3597164 | + | 1266 | WP_203521139.1 | hypothetical protein ; Integrase | Integrase |
| GTU79_RS30485 | 3597379..3597936 | - | 558 | WP_253073667.1 | LysR family substrate-binding domain-containing protein | - |
| GTU79_RS30490 | 3597939..3598301 | - | 363 | WP_253073318.1 | LysR family transcriptional regulator | - |
| GTU79_RS16740 (GTU79_16730) | 3598444..3599853 | + | 1410 | WP_203521137.1 | MFS transporter | - |
| GTU79_RS16745 (GTU79_16735) | 3600137..3600853 | + | 717 | WP_253073319.1 | sterol desaturase family protein | - |
| GTU79_RS16750 (GTU79_16740) | 3600940..3602259 | + | 1320 | WP_214513161.1 | hypothetical protein | - |
| GTU79_RS16755 (GTU79_16745) | 3602256..3603689 | + | 1434 | WP_214513162.1 | terpene cyclase/mutase family protein | - |
| GTU79_RS16760 (GTU79_16750) | 3604448..3604741 | + | 294 | WP_203521131.1 | hypothetical protein | VF |
| GTU79_RS16765 (GTU79_16755) | 3604734..3605672 | + | 939 | WP_214513163.1 | hypothetical protein | - |
| GTU79_RS16770 (GTU79_16760) | 3605774..3606112 | + | 339 | WP_214513164.1 | hypothetical protein | - |
| GTU79_RS16775 (GTU79_16765) | 3606145..3607707 | + | 1563 | WP_253073320.1 | AMP-binding protein | - |
| GTU79_RS16780 (GTU79_16770) | 3607985..3608578 | + | 594 | WP_214513165.1 | SDR family oxidoreductase | - |
| GTU79_RS16795 (GTU79_16785) | 3609152..3609358 | + | 207 | WP_214513167.1 | hypothetical protein | - |
| GTU79_RS16800 (GTU79_16790) | 3609456..3610784 | + | 1329 | WP_214513168.1 | hypothetical protein | VF |
| GTU79_RS16805 (GTU79_16795) | 3610897..3611418 | + | 522 | WP_253073668.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| GTU79_RS30495 | 3611481..3611576 | + | 96 | Protein_3320 | SDR family oxidoreductase | - |
| GTU79_RS16810 (GTU79_16800) | 3612388..3613261 | + | 874 | Protein_3321 | hypothetical protein | - |
| GTU79_RS16815 (GTU79_16805) | 3613404..3613589 | + | 186 | WP_203521122.1 | AlpA family transcriptional regulator | - |
| GTU79_RS16820 (GTU79_16810) | 3613834..3614418 | + | 585 | WP_203521120.1 | DUF2857 domain-containing protein | - |
| GTU79_RS16825 (GTU79_16815) | 3614408..3614617 | + | 210 | WP_203521119.1 | TraR/DksA family transcriptional regulator | - |
| GTU79_RS16830 (GTU79_16820) | 3614731..3615763 | + | 1033 | Protein_3325 | IS630 family transposase ISEc33 | Transposase |
| GTU79_RS16835 (GTU79_16825) | 3616208..3616428 | + | 221 | Protein_3326 | hypothetical protein | - |
| GTU79_RS16840 (GTU79_16830) | 3616533..3617198 | + | 666 | WP_203521116.1 | hypothetical protein | VF |
| GTU79_RS16845 (GTU79_16835) | 3617195..3617476 | + | 282 | WP_136157281.1 | TrbC/VirB2 family protein | - |
| GTU79_RS16850 (GTU79_16840) | 3617486..3620230 | + | 2745 | WP_214513169.1 | hypothetical protein | VF |
| GTU79_RS16855 (GTU79_16845) | 3620254..3620970 | + | 717 | WP_203521114.1 | type IV secretion system protein | - |
| GTU79_RS16860 (GTU79_16850) | 3620981..3621205 | + | 225 | WP_203521113.1 | EexN family lipoprotein | - |
| GTU79_RS16865 (GTU79_16855) | 3621216..3622254 | + | 1039 | Protein_3332 | type IV secretion system protein | - |
| GTU79_RS16870 (GTU79_16860) | 3622400..3622702 | - | 303 | WP_214513170.1 | hypothetical protein | - |
| GTU79_RS16880 (GTU79_16870) | 3623079..3623408 | - | 330 | WP_214513171.1 | hypothetical protein | - |
| GTU79_RS16885 (GTU79_16875) | 3624017..3624238 | - | 222 | WP_214513172.1 | hypothetical protein | - |
| GTU79_RS16890 (GTU79_16880) | 3624622..3624960 | - | 339 | WP_214513173.1 | hypothetical protein | - |
| GTU79_RS16895 (GTU79_16885) | 3625253..3625831 | - | 579 | WP_203521107.1 | nucleotidyltransferase | - |
| GTU79_RS16900 (GTU79_16890) | 3626444..3626584 | + | 141 | WP_203521106.1 | hypothetical protein | - |
| GTU79_RS16905 (GTU79_16895) | 3626577..3627260 | + | 684 | WP_203521105.1 | hypothetical protein | VF |
| GTU79_RS16910 (GTU79_16900) | 3627257..3628150 | + | 894 | WP_203521104.1 | P-type conjugative transfer protein VirB9 | - |
| GTU79_RS16915 (GTU79_16905) | 3628147..3629391 | + | 1245 | WP_203521103.1 | hypothetical protein | VF |
| GTU79_RS16920 (GTU79_16910) | 3629381..3630409 | + | 1029 | WP_214513174.1 | hypothetical protein | VF |
| GTU79_RS30500 | 3630584..3630796 | + | 213 | WP_253073669.1 | cag pathogenicity island Cag12 family protein | - |
| GTU79_RS16930 (GTU79_16920) | 3630874..3631172 | + | 299 | Protein_3344 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| GTU79_RS16935 (GTU79_16925) | 3631194..3631445 | + | 252 | WP_214514163.1 | hypothetical protein | - |
| GTU79_RS16940 (GTU79_16930) | 3632290..3634155 | + | 1866 | Protein_3346 | type IV secretion system DNA-binding domain-containing protein | - |
| GTU79_RS16945 (GTU79_16935) | 3634164..3634909 | + | 746 | Protein_3347 | MobC family replication-relaxation protein | - |
| GTU79_RS16950 (GTU79_16940) | 3635025..3635243 | + | 219 | WP_214513175.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| GTU79_RS16955 (GTU79_16945) | 3635246..3635551 | + | 306 | WP_214513176.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| GTU79_RS16960 (GTU79_16950) | 3635682..3636625 | - | 944 | Protein_3350 | zincin-like metallopeptidase domain-containing protein | - |
| GTU79_RS16970 (GTU79_16960) | 3638745..3639923 | + | 1179 | WP_214513178.1 | IS21 family transposase IS21 | Transposase |
| GTU79_RS16975 (GTU79_16965) | 3639923..3640484 | + | 562 | Protein_3352 | IS21 family transposase IS21 | Transposase |
| GTU79_RS16980 (GTU79_16970) | 3640561..3641582 | + | 1022 | Protein_3353 | IS21 family transposase ISRso19 | Transposase |
| GTU79_RS16985 (GTU79_16975) | 3641579..3642366 | + | 788 | Protein_3354 | IS21 family transposase ISPsy4 | Transposase |
| GTU79_RS16990 (GTU79_16980) | 3642430..3642663 | + | 234 | Protein_3355 | ATP-binding protein | - |
| GTU79_RS16995 (GTU79_16985) | 3643139..3644365 | + | 1227 | WP_214513179.1 | hypothetical protein | - |
| GTU79_RS17000 (GTU79_16990) | 3644362..3644850 | + | 489 | WP_214513180.1 | DUF6521 family protein | - |
| GTU79_RS30505 | 3644847..3645479 | + | 633 | WP_253073321.1 | hypothetical protein | - |
| GTU79_RS30510 | 3645614..3646810 | + | 1197 | WP_253073322.1 | DUF3732 domain-containing protein | - |
| GTU79_RS30515 | 3647108..3647293 | + | 186 | WP_253073323.1 | hypothetical protein | - |
| GTU79_RS30520 | 3647361..3647573 | + | 213 | WP_253073324.1 | hypothetical protein | - |
| GTU79_RS17015 (GTU79_17005) | 3648485..3650552 | + | 2068 | Protein_3362 | DUF87 domain-containing protein | - |
| GTU79_RS17020 (GTU79_17010) | 3651217..3651480 | - | 264 | WP_214513181.1 | hypothetical protein | - |
| GTU79_RS30525 | 3652003..3652674 | + | 672 | WP_253073325.1 | DUF4365 domain-containing protein | - |
| GTU79_RS30530 | 3652826..3653947 | + | 1122 | WP_253073326.1 | tetratricopeptide repeat protein | - |
| GTU79_RS30535 | 3655676..3656092 | - | 417 | WP_253073327.1 | hypothetical protein | - |
| GTU79_RS30540 | 3656098..3656331 | - | 234 | WP_253073328.1 | hypothetical protein | - |
| GTU79_RS30545 | 3656328..3656666 | - | 339 | WP_253073329.1 | DUF262 domain-containing protein | - |
| GTU79_RS17035 (GTU79_17025) | 3657190..3657723 | - | 534 | WP_203523185.1 | RES family NAD+ phosphorylase | - |
| GTU79_RS17040 (GTU79_17030) | 3657720..3658091 | - | 372 | WP_203523186.1 | DUF2384 domain-containing protein | - |
| GTU79_RS17045 (GTU79_17035) | 3658531..3658812 | + | 282 | WP_203523187.1 | Arm DNA-binding domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|