MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 29076 bp
Accession: NZ_CP075115 Location: 3872204..3901279 Organism: Salmonella enterica subsp. enterica serovar Eastbourne strain CFSAN059883 Replicon: chromosome
Accession: NZ_CP075115 Location: 3872204..3901279 Organism: Salmonella enterica subsp. enterica serovar Eastbourne strain CFSAN059883 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO38_RS18575 (3868811) | 3868811..3869527 | + | 717 | WP_000532939.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CCO38_RS18580 (3869768) | 3869768..3871813 | - | 2046 | WP_023233293.1 | hypothetical protein | - |
| CCO38_RS18585 (3872204) | 3872204..3872842 | + | 639 | WP_023233292.1 | hypothetical protein | VF |
| CCO38_RS18590 (3872866) | 3872866..3873540 | + | 675 | WP_023212774.1 | TIGR03759 family integrating conjugative element protein | - |
| CCO38_RS18595 (3873519) | 3873519..3874037 | + | 519 | WP_023212775.1 | hypothetical protein | VF |
| CCO38_RS18600 (3874034) | 3874034..3876040 | + | 2007 | Protein_3660 | type IV conjugative transfer system coupling protein TraD | - |
| CCO38_RS18605 (3876037) | 3876037..3876669 | + | 633 | WP_023233291.1 | DUF4400 domain-containing protein | - |
| CCO38_RS18610 (3877021) | 3877021..3879468 | + | 2448 | WP_052942568.1 | IS21 family transposase ISCsa9 | Transposase |
| CCO38_RS18615 (3879764) | 3879764..3880072 | + | 309 | WP_023212781.1 | RAQPRD family integrative conjugative element protein | - |
| CCO38_RS18620 (3880065) | 3880065..3880298 | + | 234 | WP_023212782.1 | TIGR03758 family integrating conjugative element protein | - |
| CCO38_RS18625 (3880308) | 3880308..3880625 | + | 318 | WP_023212783.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| CCO38_RS18630 (3880627) | 3880627..3880866 | + | 240 | WP_023212784.1 | DUF3487 family protein | - |
| CCO38_RS22100 (3880817) | 3880817..3880981 | + | 165 | WP_238705881.1 | DUF3487 family protein | - |
| CCO38_RS18635 (3880978) | 3880978..3881496 | + | 519 | Protein_3668 | TIGR03746 family integrating conjugative element protein | - |
| CCO38_RS18640 (3881530) | 3881530..3881838 | - | 309 | WP_023212786.1 | CcdB family protein | Toxin Detail |
| CCO38_RS18645 (3881841) | 3881841..3882080 | - | 240 | WP_001118105.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| CCO38_RS18650 (3882189) | 3882189..3882437 | - | 249 | WP_023212787.1 | ribbon-helix-helix domain-containing protein | - |
| CCO38_RS18655 (3882514) | 3882514..3883347 | - | 834 | WP_023212788.1 | DUF4942 domain-containing protein | - |
| CCO38_RS18660 (3883489) | 3883489..3883806 | - | 318 | Protein_3673 | toxin | - |
| CCO38_RS18665 (3883821) | 3883821..3884150 | - | 330 | WP_023212789.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| CCO38_RS18670 (3884213) | 3884213..3884713 | - | 501 | WP_023212790.1 | DNA repair protein RadC | - |
| CCO38_RS18675 (3884726) | 3884726..3885366 | - | 641 | Protein_3676 | DUF945 domain-containing protein | - |
| CCO38_RS18680 (3885451) | 3885451..3886371 | - | 921 | WP_023212792.1 | hypothetical protein | - |
| CCO38_RS18685 (3886436) | 3886436..3886639 | - | 204 | WP_000508162.1 | hypothetical protein | - |
| CCO38_RS18690 (3886656) | 3886656..3886802 | - | 147 | WP_023892166.1 | hypothetical protein | - |
| CCO38_RS18695 (3886875) | 3886875..3887588 | - | 714 | WP_001620327.1 | WYL domain-containing protein | - |
| CCO38_RS18700 (3887943) | 3887943..3888188 | - | 246 | WP_001719480.1 | hypothetical protein | - |
| CCO38_RS18705 (3888340) | 3888340..3888978 | - | 639 | WP_023233289.1 | hypothetical protein | - |
| CCO38_RS18710 (3889087) | 3889087..3889299 | - | 213 | WP_023233288.1 | hypothetical protein | - |
| CCO38_RS18715 (3889802) | 3889802..3890437 | + | 636 | WP_024148582.1 | inovirus Gp2 family protein | - |
| CCO38_RS18720 (3890543) | 3890543..3890749 | + | 207 | WP_001620335.1 | AlpA family phage regulatory protein | - |
| CCO38_RS18725 (3890836) | 3890836..3891411 | + | 576 | WP_023233286.1 | hypothetical protein | - |
| CCO38_RS18730 (3891568) | 3891568..3892092 | + | 525 | WP_023251495.1 | hypothetical protein | - |
| CCO38_RS18735 (3892515) | 3892515..3895928 | + | 3414 | WP_023233284.1 | DEAD/DEAH box helicase family protein | - |
| CCO38_RS18740 (3895992) | 3895992..3897626 | + | 1635 | WP_023233283.1 | class I SAM-dependent DNA methyltransferase | - |
| CCO38_RS18745 (3897623) | 3897623..3898822 | + | 1200 | WP_023233282.1 | restriction endonuclease subunit S | - |
| CCO38_RS18750 (3899012) | 3899012..3899322 | + | 311 | Protein_3691 | 5'-nucleotidase | - |
| CCO38_RS18755 (3899400) | 3899400..3900275 | - | 876 | WP_023137284.1 | HNH endonuclease | - |
| CCO38_RS18760 (3900491) | 3900491..3901756 | - | 1266 | Protein_3693 | hypothetical protein ; Integrase | Integrase |
| CCO38_RS18770 (3902252) | 3902252..3903271 | + | 1020 | WP_000152564.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| CCO38_RS18775 (3903299) | 3903299..3903829 | - | 531 | WP_000896756.1 | gluconokinase | - |
| CCO38_RS18780 (3904046) | 3904046..3905077 | + | 1032 | WP_000453354.1 | L-idonate 5-dehydrogenase | - |
| CCO38_RS18785 (3905102) | 3905102..3905866 | + | 765 | WP_001627667.1 | gluconate 5-dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|