MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 109074 bp
Accession: NZ_CP074418 Location: 1..109074 Organism: Vibrio parahaemolyticus strain 64 Replicon: plasmid unnamed2
Accession: NZ_CP074418 Location: 1..109074 Organism: Vibrio parahaemolyticus strain 64 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5O00_RS24985 | 48..1646 | + | 1599 | WP_257576292.1 | nuclease-related domain-containing protein | - |
| J5O00_RS24990 | 1938..2573 | + | 636 | Protein_1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| J5O00_RS24995 | 2632..2856 | + | 225 | WP_025789152.1 | hypothetical protein | - |
| J5O00_RS25000 | 3238..3606 | + | 369 | WP_219079445.1 | hypothetical protein | - |
| J5O00_RS25005 | 3727..4245 | - | 519 | WP_025789150.1 | hypothetical protein | - |
| J5O00_RS25010 | 4757..5734 | + | 978 | Protein_5 | IS91 family transposase ISVa3 | Transposase |
| J5O00_RS25015 | 6332..6730 | + | 399 | WP_219079446.1 | outer membrane beta-barrel protein | - |
| J5O00_RS25020 | 6873..7856 | + | 984 | WP_017449262.1 | outer membrane beta-barrel protein | - |
| J5O00_RS25025 | 7984..8325 | + | 342 | WP_228490421.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| J5O00_RS25030 | 9032..9205 | + | 174 | WP_017449264.1 | hypothetical protein | - |
| J5O00_RS25035 | 9363..9782 | + | 420 | WP_127914007.1 | Spy/CpxP family protein refolding chaperone | - |
| J5O00_RS25040 | 10274..10859 | - | 586 | Protein_11 | replication initiation protein | - |
| J5O00_RS25045 | 11245..11508 | + | 264 | Protein_12 | IS6 family transposase ISSba18 | Transposase |
| J5O00_RS25050 | 11509..11994 | + | 486 | WP_023624637.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| J5O00_RS25055 | 12095..12340 | + | 246 | WP_017449246.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| J5O00_RS25060 | 12340..12663 | + | 324 | WP_219079447.1 | CcdB family protein | - |
| J5O00_RS25065 | 12679..12891 | - | 213 | WP_127914006.1 | hypothetical protein | - |
| J5O00_RS25070 | 13280..14419 | - | 1140 | WP_122016159.1 | Murein DD-endopeptidase MepM | VF |
| J5O00_RS25075 | 14758..14934 | - | 177 | WP_023624642.1 | hypothetical protein | - |
| J5O00_RS26825 | 15162..15289 | - | 128 | Protein_19 | IS91 family transposase | - |
| J5O00_RS25080 | 15325..15624 | - | 300 | WP_122016157.1 | hypothetical protein | - |
| J5O00_RS25085 | 15700..15948 | - | 249 | WP_025789522.1 | helix-turn-helix domain-containing protein | - |
| J5O00_RS25090 | 16030..16962 | - | 933 | WP_023624644.1 | OmpA family protein | - |
| J5O00_RS25100 | 17939..18184 | + | 246 | WP_219079449.1 | IS630 family transposase ISSpu8 | Transposase |
| J5O00_RS25105 | 18550..19761 | + | 1212 | Protein_24 | IS4 family transposase IS10R | Transposase |
| J5O00_RS25110 | 20067..20989 | - | 923 | Protein_25 | IS5-like element ISVa2 family transposase | - |
| J5O00_RS25115 | 21040..21624 | - | 585 | WP_219079450.1 | Ig-like domain-containing protein | - |
| J5O00_RS25120 | 21803..22435 | - | 633 | WP_257576302.1 | Ig-like domain-containing protein | - |
| J5O00_RS25125 | 22537..22752 | - | 216 | WP_219079452.1 | Ig-like domain-containing protein | - |
| J5O00_RS25130 | 23315..23689 | - | 375 | WP_127914005.1 | hypothetical protein | - |
| J5O00_RS25135 | 23999..24220 | + | 222 | WP_023624649.1 | hypothetical protein | - |
| J5O00_RS26830 | 24840..24986 | + | 147 | WP_257576293.1 | recombinase family protein | - |
| J5O00_RS26835 | 24988..25128 | + | 141 | WP_257576303.1 | IS91 family transposase ISShvi3 | Transposase |
| J5O00_RS25145 | 25310..25735 | - | 426 | Protein_33 | IS91 family transposase ISShvi3 | Transposase |
| J5O00_RS25150 | 25779..25934 | - | 156 | WP_219079453.1 | hypothetical protein | - |
| J5O00_RS25155 | 26386..26616 | + | 231 | WP_122016154.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| J5O00_RS25160 | 26613..26954 | + | 342 | WP_023624650.1 | endoribonuclease MazF | Toxin Detail |
| J5O00_RS25165 | 27337..27834 | - | 498 | WP_257576294.1 | hypothetical protein | - |
| J5O00_RS25170 | 27834..28565 | - | 732 | WP_023624652.1 | AHH domain-containing protein | - |
| J5O00_RS26840 | 28858..28919 | - | 62 | Protein_39 | DUF3265 domain-containing protein | - |
| J5O00_RS26845 | 29810..30160 | - | 351 | WP_257576295.1 | hypothetical protein | - |
| J5O00_RS26850 | 30102..30671 | - | 570 | WP_257576296.1 | replication initiation protein | - |
| J5O00_RS26855 | 30706..30885 | - | 180 | WP_257576297.1 | hypothetical protein | - |
| J5O00_RS25180 | 31219..31859 | - | 641 | Protein_43 | IS5 family transposase ISVpa3 | Transposase |
| J5O00_RS25185 | 32229..32480 | + | 252 | WP_219079454.1 | hypothetical protein | - |
| J5O00_RS25190 | 32452..32868 | + | 417 | WP_219079455.1 | hypothetical protein | - |
| J5O00_RS25195 | 32946..33503 | + | 558 | WP_025789492.1 | hypothetical protein | - |
| J5O00_RS25200 | 33615..35279 | + | 1665 | WP_219079456.1 | TcfC E-set like domain-containing protein | - |
| J5O00_RS25205 | 35191..35787 | + | 597 | WP_219079457.1 | hypothetical protein | - |
| J5O00_RS25210 | 35780..36238 | + | 459 | WP_257576298.1 | CS1-pili formation C-terminal domain-containing protein | - |
| J5O00_RS25215 | 36244..36993 | + | 750 | WP_122016151.1 | hypothetical protein | - |
| J5O00_RS25220 | 37395..38051 | + | 657 | WP_140386159.1 | hypothetical protein | - |
| J5O00_RS25225 | 38293..38973 | + | 681 | WP_219079458.1 | OmpA family protein | - |
| J5O00_RS25230 | 38977..39261 | + | 285 | WP_219079459.1 | hypothetical protein | - |
| J5O00_RS25235 | 39550..39897 | + | 348 | WP_219079460.1 | hypothetical protein | - |
| J5O00_RS25240 | 40310..41008 | + | 699 | WP_219079461.1 | hypothetical protein | - |
| J5O00_RS25245 | 40989..41468 | + | 480 | WP_219079462.1 | hypothetical protein | - |
| J5O00_RS25250 | 42007..42657 | + | 651 | WP_127914003.1 | hypothetical protein | - |
| J5O00_RS25255 | 42729..42956 | + | 228 | WP_219079463.1 | hypothetical protein | - |
| J5O00_RS25260 | 43570..43773 | - | 204 | Protein_59 | hypothetical protein | VF |
| J5O00_RS25265 | 43917..44060 | - | 144 | WP_156216758.1 | hypothetical protein | - |
| J5O00_RS25270 | 44057..45234 | - | 1178 | Protein_61 | IS3 family transposase | - |
| J5O00_RS26860 | 45814..46203 | + | 390 | WP_257576299.1 | outer membrane beta-barrel protein | - |
| J5O00_RS26865 | 46119..46715 | + | 597 | WP_257576300.1 | Outer membrane protein A | VF |
| J5O00_RS25280 | 46800..46958 | + | 159 | WP_219079464.1 | hypothetical protein | - |
| J5O00_RS25285 | 46949..47188 | + | 240 | WP_219079465.1 | Ig-like domain-containing protein | - |
| J5O00_RS25290 | 47551..47766 | + | 216 | WP_219079466.1 | hypothetical protein | - |
| J5O00_RS25295 | 47846..51706 | + | 3861 | WP_219079467.1 | Ig-like domain-containing protein | - |
| J5O00_RS25300 | 52345..52827 | - | 483 | Protein_68 | DDE-type integrase/transposase/recombinase | - |
| J5O00_RS25305 | 53054..53368 | + | 315 | WP_219079468.1 | transglutaminase-like cysteine peptidase | - |
| J5O00_RS25310 | 54765..55104 | + | 340 | Protein_70 | transposase | - |
| J5O00_RS25315 | 55548..56651 | + | 1104 | WP_219079431.1 | metallophosphoesterase family protein | - |
| J5O00_RS25320 | 57018..57470 | + | 453 | WP_023624932.1 | hypothetical protein | - |
| J5O00_RS25325 | 57680..57970 | + | 291 | Protein_73 | transposase | - |
| J5O00_RS25330 | 57964..59034 | - | 1071 | Protein_74 | ParB family protein | - |
| J5O00_RS25335 | 59034..60232 | - | 1199 | Protein_75 | ParA family protein | - |
| J5O00_RS26870 | 61054..61228 | + | 175 | Protein_76 | helix-turn-helix domain-containing protein | - |
| J5O00_RS25345 | 61315..61452 | + | 138 | WP_162998354.1 | hypothetical protein | - |
| J5O00_RS25350 | 62505..63335 | - | 831 | WP_257576249.1 | hypothetical protein | - |
| J5O00_RS25355 | 63747..64238 | - | 492 | WP_257576251.1 | S24 family peptidase | - |
| J5O00_RS26875 | 64195..64299 | - | 105 | WP_257576304.1 | helix-turn-helix domain-containing protein | - |
| J5O00_RS25360 | 65052..65204 | + | 153 | WP_032072624.1 | hypothetical protein | - |
| J5O00_RS25365 | 65254..65582 | + | 329 | Protein_82 | TrbC/VirB2 family protein | - |
| J5O00_RS25370 | 65597..65941 | + | 345 | WP_257576253.1 | VirB3 family type IV secretion system protein | - |
| J5O00_RS26880 | 66038..66250 | + | 213 | WP_257576255.1 | hypothetical protein | - |
| J5O00_RS26885 | 66256..66783 | + | 528 | WP_257576256.1 | hypothetical protein | - |
| J5O00_RS26890 | 66939..67829 | + | 891 | WP_257576259.1 | DUF87 domain-containing protein | - |
| J5O00_RS26895 | 67833..68366 | + | 534 | WP_257576260.1 | hypothetical protein | - |
| J5O00_RS25380 | 68363..68809 | + | 447 | WP_219079432.1 | hypothetical protein | - |
| J5O00_RS25385 | 68806..69120 | + | 315 | WP_219079433.1 | hypothetical protein | - |
| J5O00_RS25390 | 69131..70081 | + | 951 | Protein_90 | P-type conjugative transfer ATPase TrbB | - |
| J5O00_RS25395 | 70078..71052 | + | 975 | WP_219079434.1 | P-type conjugative transfer protein TrbL | - |
| J5O00_RS25400 | 71036..71395 | + | 360 | WP_219079435.1 | hypothetical protein | - |
| J5O00_RS25405 | 71406..71603 | + | 198 | WP_122016185.1 | hypothetical protein | - |
| J5O00_RS25410 | 71613..72287 | + | 675 | WP_122016184.1 | VirB8/TrbF family protein | - |
| J5O00_RS25415 | 72296..73168 | + | 873 | WP_122016183.1 | P-type conjugative transfer protein TrbG | - |
| J5O00_RS25420 | 73168..73590 | + | 423 | WP_017449288.1 | hypothetical protein | - |
| J5O00_RS25425 | 73649..74839 | + | 1191 | WP_236579295.1 | TrbI/VirB10 family protein | - |
| J5O00_RS26900 | 75058..75534 | + | 477 | WP_257576263.1 | hypothetical protein | - |
| J5O00_RS26905 | 75557..75712 | + | 156 | WP_180766356.1 | hypothetical protein | - |
| J5O00_RS25435 | 75727..77214 | + | 1488 | WP_122016198.1 | hypothetical protein | VF |
| J5O00_RS25440 | 77214..77483 | + | 270 | WP_219079436.1 | hypothetical protein | - |
| J5O00_RS25445 | 77455..77985 | + | 531 | WP_219079437.1 | hypothetical protein | - |
| J5O00_RS25450 | 78039..78341 | + | 303 | WP_219079438.1 | hypothetical protein | - |
| J5O00_RS25455 | 78338..78979 | + | 642 | WP_122016179.1 | hypothetical protein | - |
| J5O00_RS26910 | 78976..79398 | + | 423 | WP_257576266.1 | hypothetical protein | - |
| J5O00_RS26915 | 79436..79876 | + | 441 | WP_257576267.1 | putative type II secretion system protein HxcR | VF |
| J5O00_RS26920 | 79879..80586 | + | 708 | WP_257576268.1 | ATPase, T2SS/T4P/T4SS family | - |
| J5O00_RS25465 | 80583..81467 | + | 885 | WP_257576269.1 | hypothetical protein | - |
| J5O00_RS25470 | 81608..82192 | + | 585 | WP_017449296.1 | hypothetical protein | VF |
| J5O00_RS25475 | 82192..82719 | + | 528 | WP_122016177.1 | hypothetical protein | - |
| J5O00_RS25480 | 82716..83594 | + | 879 | WP_257576270.1 | type II secretion system protein | - |
| J5O00_RS25485 | 83692..84108 | + | 417 | WP_078231486.1 | hypothetical protein | - |
| J5O00_RS25490 | 84265..84999 | + | 735 | WP_219079470.1 | trypsin-like serine protease | - |
| J5O00_RS25495 | 84980..85261 | + | 282 | WP_219079439.1 | GlyGly-CTERM sorting domain-containing protein | - |
| J5O00_RS25500 | 85405..85704 | + | 300 | WP_219079440.1 | helix-turn-helix domain-containing protein | - |
| J5O00_RS25505 | 85996..86148 | + | 153 | WP_017449302.1 | Hok/Gef family protein | - |
| J5O00_RS26925 | 86354..87287 | + | 934 | Protein_117 | conjugative transfer signal peptidase TraF | - |
| J5O00_RS25525 | 87420..87935 | + | 516 | WP_257576275.1 | hypothetical protein | - |
| J5O00_RS25530 | 88120..88410 | + | 291 | WP_122016173.1 | hypothetical protein | - |
| J5O00_RS25535 | 88403..89116 | + | 714 | WP_122016172.1 | hypothetical protein | - |
| J5O00_RS25540 | 89113..89427 | + | 315 | WP_236579298.1 | hypothetical protein | - |
| J5O00_RS25545 | 89498..90538 | + | 1041 | Protein_122 | IS481 family transposase | - |
| J5O00_RS25550 | 91167..91628 | + | 462 | WP_219079441.1 | H-NS family nucleoid-associated regulatory protein | - |
| J5O00_RS25555 | 92856..94373 | + | 1518 | Protein_124 | TraM recognition domain-containing protein | - |
| J5O00_RS26930 | 94722..95015 | + | 294 | WP_257576278.1 | hypothetical protein | - |
| J5O00_RS26935 | 95073..95270 | + | 198 | WP_257576279.1 | hypothetical protein | - |
| J5O00_RS26940 | 95843..96064 | + | 222 | WP_257576280.1 | hypothetical protein | - |
| J5O00_RS25570 | 96114..97706 | + | 1593 | WP_257576282.1 | DNA topoisomerase | - |
| J5O00_RS26945 | 97757..98098 | + | 342 | WP_257576283.1 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| J5O00_RS25575 | 98675..98884 | + | 210 | WP_017449212.1 | hypothetical protein | - |
| J5O00_RS25580 | 98914..99207 | + | 294 | WP_023623304.1 | hypothetical protein | - |
| J5O00_RS25585 | 99522..99914 | - | 393 | WP_024700500.1 | hypothetical protein | - |
| J5O00_RS25590 | 100020..100433 | - | 414 | WP_017449216.1 | antirestriction protein | - |
| J5O00_RS25595 | 100536..100937 | - | 402 | WP_257576284.1 | hypothetical protein | - |
| J5O00_RS25600 | 101008..101915 | - | 908 | Protein_135 | zincin-like metallopeptidase domain-containing protein | - |
| J5O00_RS25605 | 102131..102388 | - | 258 | WP_017449219.1 | hypothetical protein | - |
| J5O00_RS25610 | 102680..103132 | + | 453 | WP_257576285.1 | hypothetical protein | - |
| J5O00_RS25615 | 103408..103614 | - | 207 | WP_122016164.1 | hypothetical protein | - |
| J5O00_RS25620 | 103627..103878 | - | 252 | WP_025788844.1 | hypothetical protein | - |
| J5O00_RS25625 | 103891..104181 | - | 291 | WP_025788843.1 | hypothetical protein | - |
| J5O00_RS25630 | 104195..104479 | - | 285 | WP_025788842.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| J5O00_RS25635 | 104469..104724 | - | 256 | Protein_142 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| J5O00_RS25640 | 105329..105685 | - | 357 | WP_219079442.1 | hypothetical protein | - |
| J5O00_RS25645 | 105688..106050 | - | 363 | WP_219079443.1 | DUF6161 domain-containing protein | - |
| J5O00_RS25650 | 106037..106771 | - | 735 | WP_219079444.1 | DUF6161 domain-containing protein | - |
| J5O00_RS25655 | 107135..107810 | + | 676 | Protein_146 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| J5O00_RS25660 | 107880..108266 | + | 387 | WP_025792428.1 | hypothetical protein | - |
| J5O00_RS26950 | 108800..109072 | + | 273 | WP_257576291.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|