MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 147126 bp
Accession: NZ_CP074397 Location: 1..147126 Organism: Agrobacterium salinitolerans strain DG3-1 Replicon: plasmid pDG3-1d
Accession: NZ_CP074397 Location: 1..147126 Organism: Agrobacterium salinitolerans strain DG3-1 Replicon: plasmid pDG3-1d
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHC17_RS25335 (KHC17_25335) | 1..218 | - | 218 | Protein_0 | MFS transporter | - |
| KHC17_RS25340 (KHC17_25340) | 498..2432 | + | 1935 | Protein_1 | ABC transporter ATP-binding protein/permease | - |
| KHC17_RS25345 (KHC17_25345) | 2613..3423 | + | 811 | Protein_2 | DUF4242 domain-containing protein | - |
| KHC17_RS25350 (KHC17_25350) | 3464..5462 | - | 1999 | Protein_3 | hypothetical protein | - |
| KHC17_RS25355 (KHC17_25355) | 5610..6503 | - | 894 | WP_137412126.1 | DMT family transporter | - |
| KHC17_RS25360 (KHC17_25360) | 6752..7156 | - | 405 | WP_137412127.1 | hypothetical protein | - |
| KHC17_RS25365 (KHC17_25365) | 7203..7421 | - | 219 | WP_003505772.1 | hypothetical protein | - |
| KHC17_RS25370 (KHC17_25370) | 7431..7592 | + | 162 | WP_187772196.1 | hypothetical protein | - |
| KHC17_RS25375 (KHC17_25375) | 7708..8049 | + | 342 | WP_020009926.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| KHC17_RS25380 (KHC17_25380) | 8046..8984 | + | 939 | WP_137412128.1 | SRPBCC family protein | - |
| KHC17_RS29655 | 9292..9728 | + | 437 | Protein_10 | Fic family protein | - |
| KHC17_RS25385 (KHC17_25385) | 10299..10763 | + | 465 | WP_217005355.1 | DUF1348 family protein | - |
| KHC17_RS25390 (KHC17_25390) | 10766..11368 | + | 603 | WP_217005357.1 | TetR/AcrR family transcriptional regulator | - |
| KHC17_RS25395 (KHC17_25395) | 11434..12036 | + | 603 | WP_217005359.1 | heme-binding protein | - |
| KHC17_RS25400 (KHC17_25400) | 12471..13421 | - | 951 | WP_217005361.1 | AraC family transcriptional regulator | - |
| KHC17_RS25405 (KHC17_25405) | 13517..14269 | + | 753 | WP_137412132.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| KHC17_RS25410 (KHC17_25410) | 14358..15089 | - | 732 | WP_137412133.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| KHC17_RS25415 (KHC17_25415) | 15171..15563 | + | 393 | WP_077984384.1 | helix-turn-helix domain-containing protein | - |
| KHC17_RS25420 (KHC17_25420) | 15734..16363 | + | 630 | WP_137412134.1 | hypothetical protein | - |
| KHC17_RS25425 (KHC17_25425) | 16637..16948 | + | 312 | WP_137412135.1 | hypothetical protein | - |
| KHC17_RS25430 (KHC17_25430) | 17767..18165 | + | 399 | WP_170985677.1 | hypothetical protein | - |
| KHC17_RS25435 (KHC17_25435) | 18534..18845 | + | 312 | Protein_21 | NADPH-dependent oxidoreductase | - |
| KHC17_RS25440 (KHC17_25440) | 19114..19431 | + | 318 | WP_137412137.1 | PepSY domain-containing protein | - |
| KHC17_RS25445 (KHC17_25445) | 19458..20066 | + | 609 | WP_137412138.1 | hypothetical protein | - |
| KHC17_RS25450 (KHC17_25450) | 20135..22279 | + | 2145 | WP_217005363.1 | Catalase C | VF |
| KHC17_RS25455 (KHC17_25455) | 22322..22822 | + | 501 | WP_137412140.1 | ferritin-like domain-containing protein | - |
| KHC17_RS25460 (KHC17_25460) | 22899..23558 | + | 660 | WP_170985668.1 | hypothetical protein | - |
| KHC17_RS25465 (KHC17_25465) | 23569..24192 | + | 624 | WP_217005366.1 | isochorismatase family cysteine hydrolase | - |
| KHC17_RS25470 (KHC17_25470) | 24310..24507 | + | 198 | WP_149147413.1 | hypothetical protein | - |
| KHC17_RS25475 (KHC17_25475) | 24529..24759 | - | 231 | WP_217005368.1 | hypothetical protein | - |
| KHC17_RS25480 (KHC17_25480) | 24911..25078 | + | 168 | WP_254229189.1 | hypothetical protein | - |
| KHC17_RS25485 (KHC17_25485) | 25222..25746 | + | 525 | WP_137412145.1 | sigma-70 family RNA polymerase sigma factor | - |
| KHC17_RS25490 (KHC17_25490) | 26223..26450 | - | 228 | WP_137412147.1 | hypothetical protein | - |
| KHC17_RS25495 (KHC17_25495) | 26575..27357 | - | 783 | WP_137412148.1 | Crp/Fnr family transcriptional regulator | - |
| KHC17_RS25500 (KHC17_25500) | 27374..27733 | - | 360 | WP_187772193.1 | hypothetical protein | - |
| KHC17_RS25505 (KHC17_25505) | 28032..28304 | + | 273 | WP_170985672.1 | DUF982 domain-containing protein | - |
| KHC17_RS25510 (KHC17_25510) | 28371..28598 | + | 228 | WP_254229190.1 | hypothetical protein | - |
| KHC17_RS25515 (KHC17_25515) | 28623..28958 | - | 336 | WP_191218565.1 | hypothetical protein | - |
| KHC17_RS25520 (KHC17_25520) | 29047..29703 | - | 657 | WP_217005369.1 | UdgX family uracil-DNA binding protein | - |
| KHC17_RS25525 (KHC17_25525) | 29965..30738 | + | 774 | WP_149147407.1 | Crp/Fnr family transcriptional regulator | - |
| KHC17_RS25530 (KHC17_25530) | 30691..30930 | - | 240 | WP_137412154.1 | hypothetical protein | - |
| KHC17_RS25535 (KHC17_25535) | 30985..31173 | - | 189 | WP_149147406.1 | hypothetical protein | - |
| KHC17_RS29660 | 31323..31526 | + | 204 | WP_254229191.1 | hypothetical protein | - |
| KHC17_RS29665 | 31569..31757 | + | 189 | WP_137412156.1 | hypothetical protein | - |
| KHC17_RS25540 (KHC17_25540) | 31778..32068 | + | 291 | WP_217005370.1 | DUF3175 domain-containing protein | - |
| KHC17_RS25545 (KHC17_25545) | 32249..32739 | - | 491 | Protein_45 | DUF305 domain-containing protein | - |
| KHC17_RS25550 (KHC17_25550) | 32872..33318 | - | 447 | WP_149147404.1 | CBS domain-containing protein | - |
| KHC17_RS25555 (KHC17_25555) | 33362..33676 | - | 315 | WP_191218562.1 | plasmid stabilization protein | - |
| KHC17_RS29670 | 33766..33894 | - | 129 | Protein_48 | DUF421 domain-containing protein | - |
| KHC17_RS25560 (KHC17_25560) | 33928..34440 | - | 513 | WP_191218561.1 | DUF305 domain-containing protein | - |
| KHC17_RS25565 (KHC17_25565) | 34456..35196 | - | 741 | WP_191218560.1 | glutaredoxin | - |
| KHC17_RS25575 (KHC17_25575) | 35798..37063 | + | 1266 | WP_191218559.1 | sodium:proton antiporter | - |
| KHC17_RS25580 (KHC17_25580) | 37109..37399 | - | 291 | WP_137412163.1 | hypothetical protein | - |
| KHC17_RS29675 | 37586..38749 | - | 1164 | Protein_53 | hypothetical protein | - |
| KHC17_RS25590 (KHC17_25590) | 38892..39470 | - | 579 | WP_137412164.1 | PIN domain-containing protein | - |
| KHC17_RS25595 (KHC17_25595) | 39460..39906 | - | 447 | WP_065658844.1 | excisionase | - |
| KHC17_RS25600 (KHC17_25600) | 40219..40539 | + | 321 | WP_137412165.1 | ferredoxin family protein | - |
| KHC17_RS25605 (KHC17_25605) | 40556..41941 | - | 1386 | WP_137412166.1 | amidohydrolase family protein | - |
| KHC17_RS25610 (KHC17_25610) | 41946..42869 | - | 924 | WP_137412167.1 | LysR family transcriptional regulator | - |
| KHC17_RS25615 (KHC17_25615) | 42919..43703 | - | 785 | Protein_59 | enoyl-CoA hydratase-related protein | - |
| KHC17_RS25620 (KHC17_25620) | 43700..44857 | - | 1158 | WP_137412169.1 | CoA transferase | - |
| KHC17_RS25625 (KHC17_25625) | 44854..46212 | - | 1359 | WP_137412170.1 | FAD-dependent oxidoreductase | - |
| KHC17_RS25630 (KHC17_25630) | 46238..47014 | - | 777 | WP_137412211.1 | ABC transporter permease | - |
| KHC17_RS25635 (KHC17_25635) | 47071..47874 | - | 804 | WP_137412171.1 | Taurine import ATP-binding protein TauB | VF |
| KHC17_RS25640 (KHC17_25640) | 47879..48913 | - | 1035 | WP_137412172.1 | ABC transporter substrate-binding protein | - |
| KHC17_RS25645 (KHC17_25645) | 49274..49723 | + | 450 | WP_217005371.1 | hypothetical protein | - |
| KHC17_RS25650 (KHC17_25650) | 49720..50133 | - | 414 | WP_149147396.1 | VOC family protein | - |
| KHC17_RS25655 (KHC17_25655) | 50228..51094 | + | 867 | WP_137412174.1 | HTH-type transcriptional regulator YofA | VF |
| KHC17_RS25660 (KHC17_25660) | 51698..52405 | + | 708 | WP_254229192.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| KHC17_RS25665 (KHC17_25665) | 52417..53412 | - | 996 | WP_217005372.1 | Tyrosine recombinase XerD | VF |
| KHC17_RS25670 (KHC17_25670) | 53409..54356 | - | 948 | WP_217005373.1 | tyrosine-type recombinase/integrase | - |
| KHC17_RS25675 (KHC17_25675) | 54353..54625 | - | 273 | Protein_71 | tyrosine-type recombinase/integrase | - |
| KHC17_RS25685 (KHC17_25685) | 56097..57116 | - | 1020 | WP_217005375.1 | tyrosine-type recombinase/integrase | - |
| KHC17_RS25690 (KHC17_25690) | 57460..59406 | + | 1947 | WP_217005377.1 | Tetracycline resistance protein TetO | VF |
| KHC17_RS25695 (KHC17_25695) | 59703..59996 | + | 294 | Protein_75 | zincin-like metallopeptidase domain-containing protein | - |
| KHC17_RS25700 (KHC17_25700) | 60008..61243 | - | 1236 | WP_217005379.1 | Serine/threonine-protein kinase toxin HipA | VF |
| KHC17_RS25705 (KHC17_25705) | 61236..61829 | - | 594 | WP_217005381.1 | helix-turn-helix transcriptional regulator | - |
| KHC17_RS25710 (KHC17_25710) | 62555..64357 | - | 1803 | WP_217005383.1 | monovalent cation:proton antiporter-2 (CPA2) family protein | - |
| KHC17_RS25715 (KHC17_25715) | 64362..64631 | - | 270 | WP_137412183.1 | hypothetical protein | - |
| KHC17_RS25720 (KHC17_25720) | 64700..65473 | - | 774 | WP_217005385.1 | SDR family oxidoreductase | - |
| KHC17_RS25725 (KHC17_25725) | 65616..66515 | + | 900 | WP_217005387.1 | HTH-type transcriptional regulator PgrR | VF |
| KHC17_RS25730 (KHC17_25730) | 66782..67533 | - | 752 | Protein_82 | DeoR/GlpR family DNA-binding transcription regulator | - |
| KHC17_RS25735 (KHC17_25735) | 67871..68917 | + | 1047 | WP_137412185.1 | autoinducer 2 ABC transporter substrate-binding protein | - |
| KHC17_RS25740 (KHC17_25740) | 68999..70484 | + | 1486 | Protein_84 | sugar ABC transporter ATP-binding protein | - |
| KHC17_RS25745 (KHC17_25745) | 70498..71474 | + | 977 | Protein_85 | ABC transporter permease | - |
| KHC17_RS25750 (KHC17_25750) | 71489..72487 | + | 999 | WP_217005389.1 | ABC transporter permease | - |
| KHC17_RS29680 | 72462..72902 | + | 441 | WP_254229193.1 | hypothetical protein | - |
| KHC17_RS29685 | 72824..73513 | + | 690 | WP_254229194.1 | DUF4432 family protein | - |
| KHC17_RS25760 (KHC17_25760) | 73594..74532 | + | 939 | WP_217005391.1 | ribokinase | - |
| KHC17_RS25765 (KHC17_25765) | 74552..75511 | + | 960 | WP_217005393.1 | deoxyribose-phosphate aldolase | - |
| KHC17_RS25770 (KHC17_25770) | 75522..77918 | + | 2397 | WP_217005395.1 | aldehyde dehydrogenase family protein | - |
| KHC17_RS25775 (KHC17_25775) | 78334..78849 | + | 516 | WP_254229195.1 | hypothetical protein | - |
| KHC17_RS25780 (KHC17_25780) | 78855..80528 | - | 1674 | WP_217005397.1 | transposase | - |
| KHC17_RS25785 (KHC17_25785) | 80598..81689 | + | 1092 | WP_217005399.1 | RHE_PE00001 family protein | - |
| KHC17_RS25790 (KHC17_25790) | 81762..82097 | + | 336 | WP_217005401.1 | hypothetical protein | - |
| KHC17_RS25795 (KHC17_25795) | 82094..84232 | + | 2139 | WP_217005403.1 | ATP-binding protein | - |
| KHC17_RS25800 (KHC17_25800) | 84233..85534 | + | 1302 | WP_217005405.1 | hypothetical protein | - |
| KHC17_RS25805 (KHC17_25805) | 85538..86419 | - | 882 | WP_217005407.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| KHC17_RS25810 (KHC17_25810) | 86412..87023 | - | 612 | WP_217005409.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| KHC17_RS25815 (KHC17_25815) | 87149..87613 | - | 465 | WP_217005411.1 | very short patch repair endonuclease | - |
| KHC17_RS25820 (KHC17_25820) | 87690..89300 | + | 1611 | WP_217005413.1 | DNA cytosine methyltransferase | - |
| KHC17_RS25825 (KHC17_25825) | 89290..90801 | + | 1512 | WP_217005415.1 | ATP-binding protein | - |
| KHC17_RS25830 (KHC17_25830) | 90820..93561 | + | 2742 | WP_217005417.1 | Z1 domain-containing protein | - |
| KHC17_RS25835 (KHC17_25835) | 93558..94568 | + | 1011 | WP_217005419.1 | PD-(D/E)XK motif protein | - |
| KHC17_RS25840 (KHC17_25840) | 94561..96606 | + | 2046 | WP_217005421.1 | AIPR family protein | - |
| KHC17_RS25845 (KHC17_25845) | 96651..98114 | + | 1464 | WP_217005423.1 | hypothetical protein | - |
| KHC17_RS25850 (KHC17_25850) | 98349..99848 | - | 1500 | WP_217005425.1 | AAA family ATPase | - |
| KHC17_RS25855 (KHC17_25855) | 100289..100507 | - | 219 | WP_217005427.1 | hypothetical protein | - |
| KHC17_RS25860 (KHC17_25860) | 100811..101563 | - | 753 | WP_027677343.1 | IS21 family transposase ISRsp2 | Transposase |
| KHC17_RS25865 (KHC17_25865) | 101582..103135 | - | 1554 | WP_111794918.1 | IS21 family transposase ISRsp2 | Transposase |
| KHC17_RS25870 (KHC17_25870) | 103697..106594 | - | 2898 | WP_217005429.1 | class I SAM-dependent DNA methyltransferase | - |
| KHC17_RS25875 (KHC17_25875) | 106717..106914 | - | 198 | Protein_112 | IS21 family transposase ISPkr1 | Transposase |
| KHC17_RS25880 (KHC17_25880) | 106892..107183 | - | 292 | Protein_113 | IS21 family transposase | - |
| KHC17_RS25885 (KHC17_25885) | 107419..107811 | - | 393 | WP_217005435.1 | transcriptional regulator | - |
| KHC17_RS25890 (KHC17_25890) | 108174..111923 | - | 3750 | WP_217005437.1 | Mobilization protein A | Relaxase |
| KHC17_RS25895 (KHC17_25895) | 112605..112913 | + | 309 | WP_217005439.1 | mobilization protein | - |
| KHC17_RS25900 (KHC17_25900) | 112910..114574 | + | 1665 | WP_217005441.1 | Conjugal transfer protein TraG | VF |
| KHC17_RS25905 (KHC17_25905) | 115181..116116 | + | 936 | WP_217005465.1 | nucleotidyltransferase and HEPN domain-containing protein | - |
| KHC17_RS25910 (KHC17_25910) | 116547..116732 | + | 186 | WP_217005442.1 | hypothetical protein | - |
| KHC17_RS25915 (KHC17_25915) | 116932..117591 | - | 660 | WP_137412410.1 | porin family protein | - |
| KHC17_RS25920 (KHC17_25920) | 117799..118182 | - | 384 | WP_191218689.1 | ester cyclase | - |
| KHC17_RS25925 (KHC17_25925) | 118516..119781 | - | 1266 | WP_254229196.1 | Riboflavin transporter RibZ | VF |
| KHC17_RS25930 (KHC17_25930) | 119851..120282 | + | 432 | WP_137412412.1 | helix-turn-helix domain-containing protein | - |
| KHC17_RS25935 (KHC17_25935) | 120955..121122 | + | 168 | WP_246666611.1 | DUF1851 domain-containing protein | - |
| KHC17_RS25940 (KHC17_25940) | 121250..121453 | + | 204 | WP_165691214.1 | DUF4287 domain-containing protein | - |
| KHC17_RS25945 (KHC17_25945) | 121530..122432 | - | 903 | WP_217005443.1 | HTH-type transcriptional regulator PgrR | VF |
| KHC17_RS25950 (KHC17_25950) | 122524..123540 | + | 1017 | WP_217005444.1 | 2-haloacrylate reductase | VF |
| KHC17_RS25955 (KHC17_25955) | 123613..123915 | + | 303 | WP_191218693.1 | putative quinol monooxygenase | - |
| KHC17_RS25960 (KHC17_25960) | 124036..124233 | + | 198 | WP_137412424.1 | hypothetical protein | - |
| KHC17_RS25965 (KHC17_25965) | 124428..124739 | + | 312 | WP_246666610.1 | helix-turn-helix transcriptional regulator | - |
| KHC17_RS25970 (KHC17_25970) | 124736..125989 | + | 1254 | WP_137412425.1 | type II toxin-antitoxin system HipA family toxin | - |
| KHC17_RS29690 | 125930..126169 | - | 240 | WP_137412426.1 | DUF6516 family protein | - |
| KHC17_RS25975 (KHC17_25975) | 126677..128362 | + | 1686 | WP_217005445.1 | FAD/NAD(P)-binding protein | - |
| KHC17_RS25980 (KHC17_25980) | 128435..129142 | + | 708 | WP_217005446.1 | MOSC domain-containing protein | - |
| KHC17_RS25985 (KHC17_25985) | 129521..130018 | - | 498 | WP_137412438.1 | RES family NAD+ phosphorylase | - |
| KHC17_RS25990 (KHC17_25990) | 130026..130376 | - | 351 | WP_103466536.1 | MbcA/ParS/Xre antitoxin family protein | - |
| KHC17_RS29695 | 130608..130872 | - | 265 | Protein_137 | AAA family ATPase | - |
| KHC17_RS25995 (KHC17_25995) | 130941..131309 | - | 369 | WP_137412429.1 | transcriptional regulator | - |
| KHC17_RS26000 (KHC17_26000) | 131566..132249 | + | 684 | WP_217005448.1 | hypothetical protein | - |
| KHC17_RS26005 (KHC17_26005) | 132246..133088 | + | 843 | WP_137412431.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| KHC17_RS26010 (KHC17_26010) | 134014..134835 | - | 822 | WP_217005449.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| KHC17_RS26015 (KHC17_26015) | 134832..135510 | - | 679 | Protein_142 | hypothetical protein | - |
| KHC17_RS29700 | 136196..136452 | + | 257 | Protein_143 | AAA family ATPase | - |
| KHC17_RS26020 (KHC17_26020) | 136677..137025 | + | 349 | Protein_144 | MbcA/ParS/Xre antitoxin family protein | - |
| KHC17_RS26025 (KHC17_26025) | 137033..137529 | + | 497 | Protein_145 | RES family NAD+ phosphorylase | - |
| KHC17_RS26030 (KHC17_26030) | 137908..138432 | - | 525 | WP_254229197.1 | MOSC domain-containing protein | - |
| KHC17_RS29705 | 138675..139538 | - | 864 | WP_254229198.1 | hypothetical protein | - |
| KHC17_RS29710 | 139683..140342 | - | 660 | WP_254229199.1 | FAD/NAD(P)-binding protein | - |
| KHC17_RS26045 (KHC17_26045) | 140846..141085 | + | 240 | WP_137412426.1 | DUF6516 family protein | - |
| KHC17_RS26050 (KHC17_26050) | 141082..142242 | - | 1161 | Protein_150 | type II toxin-antitoxin system HipA family toxin | - |
| KHC17_RS26055 (KHC17_26055) | 142263..142574 | - | 312 | WP_246666610.1 | helix-turn-helix transcriptional regulator | - |
| KHC17_RS26060 (KHC17_26060) | 142769..142966 | - | 198 | WP_137412424.1 | hypothetical protein | - |
| KHC17_RS26065 (KHC17_26065) | 143139..143372 | - | 234 | WP_254229200.1 | antibiotic biosynthesis monooxygenase | - |
| KHC17_RS26070 (KHC17_26070) | 143444..144438 | - | 995 | Protein_154 | NADP-dependent oxidoreductase | - |
| KHC17_RS26075 (KHC17_26075) | 144530..145422 | + | 893 | Protein_155 | LysR substrate-binding domain-containing protein | - |
| KHC17_RS26080 (KHC17_26080) | 145320..145625 | - | 306 | WP_254229201.1 | hypothetical protein | - |
| KHC17_RS26085 (KHC17_26085) | 145823..145978 | - | 156 | WP_217005455.1 | hypothetical protein | - |
| KHC17_RS26090 (KHC17_26090) | 146585..147034 | - | 450 | WP_217005471.1 | MerR family DNA-binding transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|