MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 106702 bp
Accession: NZ_CP074169 Location: 1..106702 Organism: Serratia ureilytica strain JBIWA004 Replicon: plasmid pJBIWA004_1
Accession: NZ_CP074169 Location: 1..106702 Organism: Serratia ureilytica strain JBIWA004 Replicon: plasmid pJBIWA004_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGP23_RS24230 (KGP23_24170) | 506..1000 | + | 495 | WP_149572019.1 | oxidoreductase | - |
| KGP23_RS24235 (KGP23_24175) | 997..2712 | + | 1716 | WP_223525160.1 | hybrid sensor histidine kinase/response regulator | - |
| KGP23_RS24240 (KGP23_24180) | 2842..3237 | - | 396 | WP_149572017.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| KGP23_RS24245 (KGP23_24185) | 3659..4135 | + | 477 | WP_223525162.1 | hypothetical protein | VF |
| KGP23_RS24250 (KGP23_24190) | 4420..4716 | - | 297 | WP_223525164.1 | DUF5983 family protein | - |
| KGP23_RS24255 (KGP23_24195) | 4818..5645 | - | 828 | WP_223525166.1 | DUF932 domain-containing protein | - |
| KGP23_RS24260 (KGP23_24200) | 5702..6073 | - | 372 | WP_223525168.1 | dehydrogenase | - |
| KGP23_RS24265 (KGP23_24205) | 6811..7446 | - | 636 | WP_223525170.1 | N-6 DNA methylase | - |
| KGP23_RS24270 (KGP23_24210) | 7662..7922 | - | 261 | WP_094887931.1 | hypothetical protein | - |
| KGP23_RS24275 (KGP23_24215) | 8008..8355 | - | 348 | WP_223525172.1 | hypothetical protein | - |
| KGP23_RS24280 (KGP23_24220) | 8392..8856 | - | 465 | WP_223525174.1 | protein TraE | - |
| KGP23_RS24285 (KGP23_24225) | 9416..10141 | - | 726 | WP_223525176.1 | plasmid SOS inhibition protein A | - |
| KGP23_RS24290 (KGP23_24230) | 10138..10578 | - | 441 | WP_191121288.1 | conjugation system SOS inhibitor PsiB | - |
| KGP23_RS24295 (KGP23_24235) | 10620..12668 | - | 2049 | WP_223525178.1 | ParB/RepB/Spo0J family partition protein | - |
| KGP23_RS24300 (KGP23_24240) | 12760..13050 | - | 291 | WP_223525180.1 | ribulokinase | - |
| KGP23_RS24305 (KGP23_24245) | 13597..14232 | + | 636 | WP_019454356.1 | AAA family ATPase | - |
| KGP23_RS24310 (KGP23_24250) | 14226..14483 | + | 258 | WP_019454355.1 | hypothetical protein | - |
| KGP23_RS24315 (KGP23_24255) | 14793..15422 | + | 630 | WP_223525181.1 | hypothetical protein | - |
| KGP23_RS24320 (KGP23_24260) | 15551..16366 | - | 816 | WP_223525183.1 | tyrosine-type recombinase/integrase | - |
| KGP23_RS24325 (KGP23_24265) | 16835..17782 | + | 948 | WP_223525185.1 | Abi family protein | - |
| KGP23_RS24330 (KGP23_24270) | 18024..18748 | + | 725 | Protein_21 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| KGP23_RS24335 (KGP23_24275) | 18741..20840 | + | 2100 | WP_223525187.1 | peptidase domain-containing ABC transporter | - |
| KGP23_RS24340 (KGP23_24280) | 20897..21145 | - | 249 | WP_126502361.1 | hypothetical protein | - |
| KGP23_RS24345 (KGP23_24285) | 21533..21883 | + | 351 | WP_223525189.1 | hypothetical protein | - |
| KGP23_RS24350 (KGP23_24290) | 22120..22851 | - | 732 | WP_223525190.1 | 2OG-Fe(II) oxygenase | - |
| KGP23_RS24355 (KGP23_24295) | 23720..23992 | + | 273 | WP_223525192.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| KGP23_RS24360 (KGP23_24300) | 23989..24285 | + | 297 | WP_223525194.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| KGP23_RS24365 (KGP23_24305) | 24387..24602 | + | 216 | Protein_28 | IS6 family transposase | - |
| KGP23_RS24370 (KGP23_24310) | 24886..25409 | + | 524 | Protein_29 | IS3 family transposase ISEhe3 | Transposase |
| KGP23_RS24375 (KGP23_24315) | 25552..26430 | - | 879 | WP_223174988.1 | Imipenem-hydrolyzing beta-lactamase | ARG |
| KGP23_RS24380 (KGP23_24320) | 26905..27579 | - | 675 | Protein_31 | IS6 family transposase ISYps1 | Transposase |
| KGP23_RS24385 (KGP23_24325) | 27925..28152 | - | 228 | WP_223525196.1 | plasmid partition protein ParG | - |
| KGP23_RS24390 (KGP23_24330) | 28200..28820 | - | 621 | WP_223525198.1 | Protein virC1 | VF |
| KGP23_RS24395 (KGP23_24335) | 29237..29884 | + | 648 | WP_223525200.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| KGP23_RS24400 (KGP23_24340) | 29881..30852 | + | 972 | WP_223525202.1 | Recombination-promoting nuclease RpnA | VF |
| KGP23_RS24405 (KGP23_24345) | 30881..31495 | + | 615 | WP_223525204.1 | DUF2913 family protein | - |
| KGP23_RS24410 (KGP23_24350) | 32188..33411 | + | 1224 | WP_223525207.1 | group II intron reverse transcriptase/maturase | - |
| KGP23_RS24415 | 33670..33852 | + | 183 | WP_223525230.1 | HNH endonuclease signature motif containing protein | - |
| KGP23_RS24420 (KGP23_24355) | 34112..34816 | - | 705 | WP_223525208.1 | IS6 family transposase IS15DI | Transposase |
| KGP23_RS24425 (KGP23_24360) | 35778..37259 | + | 1482 | WP_223525210.1 | alanine/glycine:cation symporter family protein | - |
| KGP23_RS24430 (KGP23_24365) | 37341..38383 | - | 1043 | Protein_41 | IS200-IS605 family transposase IS609 | Transposase |
| KGP23_RS24435 (KGP23_24370) | 39437..40132 | + | 696 | WP_223525212.1 | isocitrate lyase/phosphoenolpyruvate mutase family protein | - |
| KGP23_RS24440 (KGP23_24375) | 40518..40960 | - | 443 | Protein_43 | ISNCY family transposase ISLad2 | Transposase |
| KGP23_RS24445 (KGP23_24380) | 41219..42248 | - | 1030 | Protein_44 | IS630 family transposase | - |
| KGP23_RS24450 (KGP23_24385) | 42751..43338 | + | 588 | WP_223525214.1 | cytochrome b/b6 domain-containing protein | - |
| KGP23_RS24455 (KGP23_24390) | 43828..44430 | - | 603 | WP_223525216.1 | hypothetical protein | - |
| KGP23_RS24460 (KGP23_24395) | 45018..45767 | - | 750 | WP_223525218.1 | isocitrate lyase/phosphoenolpyruvate mutase family protein | - |
| KGP23_RS24465 (KGP23_24400) | 46009..46422 | + | 414 | WP_223525219.1 | effector binding domain-containing protein | - |
| KGP23_RS24470 (KGP23_24405) | 46816..47139 | - | 324 | WP_223525221.1 | hypothetical protein | - |
| KGP23_RS24475 (KGP23_24410) | 47331..48839 | - | 1509 | Protein_50 | group II intron reverse transcriptase/maturase | - |
| KGP23_RS24480 (KGP23_24415) | 49501..49701 | - | 201 | WP_223525223.1 | DUF2913 family protein | - |
| KGP23_RS24485 (KGP23_24420) | 50051..50587 | - | 537 | WP_223525224.1 | stationary phase growth adaptation protein | - |
| KGP23_RS24490 (KGP23_24425) | 50764..51474 | - | 711 | WP_223525226.1 | tyrosine-type recombinase/integrase | - |
| KGP23_RS24495 (KGP23_24430) | 52468..52659 | - | 192 | WP_089186946.1 | hypothetical protein | - |
| KGP23_RS24500 (KGP23_24435) | 52711..53004 | - | 294 | WP_080335483.1 | hypothetical protein | - |
| KGP23_RS24505 (KGP23_24440) | 53005..53856 | - | 852 | WP_223525228.1 | ParA family protein | - |
| KGP23_RS24510 (KGP23_24445) | 54428..55888 | - | 1461 | Protein_57 | IS66 family transposase ISCro1 | Transposase |
| KGP23_RS24515 (KGP23_24450) | 55908..56054 | - | 147 | WP_223525079.1 | IS66 family transposase IS679 | Transposase |
| KGP23_RS24525 (KGP23_24460) | 56763..57641 | - | 879 | WP_223525081.1 | Imipenem-hydrolyzing beta-lactamase | ARG |
| KGP23_RS24530 | 57828..57911 | - | 84 | Protein_60 | hypothetical protein | - |
| KGP23_RS24535 (KGP23_24465) | 58005..58595 | + | 591 | WP_223525083.1 | plasmid pRiA4b ORF-3 family protein | - |
| KGP23_RS24540 (KGP23_24470) | 58775..60157 | + | 1383 | WP_223525233.1 | ISKra4 family transposase ISKpn19 | Transposase |
| KGP23_RS24545 (KGP23_24475) | 60211..60534 | - | 324 | Protein_63 | IS3 family transposase | - |
| KGP23_RS24550 (KGP23_24480) | 61133..61747 | - | 615 | WP_223525085.1 | Transcriptional regulatory protein UhpA | VF |
| KGP23_RS24555 (KGP23_24485) | 61763..62386 | - | 624 | WP_223525087.1 | helix-turn-helix domain-containing protein | - |
| KGP23_RS24560 (KGP23_24490) | 62796..63770 | - | 975 | WP_223525089.1 | fimbrial protein | - |
| KGP23_RS24565 (KGP23_24495) | 63820..64017 | - | 198 | WP_223525091.1 | ANR family transcriptional regulator | - |
| KGP23_RS24570 (KGP23_24500) | 64064..64582 | - | 519 | WP_223525093.1 | Protein FimG | VF |
| KGP23_RS24575 (KGP23_24505) | 64634..67168 | - | 2535 | WP_223525095.1 | Outer membrane usher protein FimD | VF |
| KGP23_RS24580 (KGP23_24510) | 67182..67862 | - | 681 | WP_223525097.1 | Chaperone protein FimC | VF |
| KGP23_RS24585 (KGP23_24515) | 67925..68443 | - | 519 | WP_223525099.1 | putative major fimbrial subunit LpfA | VF |
| KGP23_RS24590 | 69174..69487 | + | 314 | Protein_72 | hypothetical protein | - |
| KGP23_RS24595 (KGP23_24520) | 69568..69783 | - | 216 | Protein_73 | IS3 family transposase ISCfr6 | Transposase |
| KGP23_RS24600 (KGP23_24525) | 69885..70291 | - | 407 | Protein_74 | type II toxin-antitoxin system VapC family toxin | - |
| KGP23_RS24605 (KGP23_24530) | 70288..70517 | - | 230 | Protein_75 | type II toxin-antitoxin system VapB family antitoxin | - |
| KGP23_RS24610 (KGP23_24535) | 71123..72346 | + | 1224 | WP_223525101.1 | IS91 family transposase ISVa3 | Transposase |
| KGP23_RS24615 (KGP23_24540) | 73402..74349 | - | 948 | WP_223525103.1 | Replication protein | - |
| KGP23_RS24625 (KGP23_24545) | 74776..75027 | - | 252 | WP_223525105.1 | replication regulatory protein RepA | - |
| KGP23_RS24630 (KGP23_24550) | 75164..75724 | - | 561 | WP_223525107.1 | Phospholipase D | VF |
| KGP23_RS24635 (KGP23_24555) | 75885..76622 | - | 738 | WP_223525109.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| KGP23_RS24640 (KGP23_24560) | 76624..81870 | - | 5247 | WP_223525111.1 | Multifunctional conjugation protein TraI | Relaxase |
| KGP23_RS24645 (KGP23_24565) | 81870..84071 | - | 2202 | WP_223525113.1 | type IV conjugative transfer system coupling protein TraD | - |
| KGP23_RS24650 (KGP23_24570) | 84389..84907 | - | 519 | WP_223525115.1 | hypothetical protein | - |
| KGP23_RS24655 (KGP23_24575) | 84913..87741 | - | 2829 | WP_223525117.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| KGP23_RS24660 (KGP23_24580) | 87741..89108 | - | 1368 | WP_223525119.1 | conjugal transfer pilus assembly protein TraH | - |
| KGP23_RS24665 (KGP23_24585) | 89105..89671 | - | 567 | WP_223525121.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| KGP23_RS24670 (KGP23_24590) | 89661..89924 | - | 264 | WP_223525123.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| KGP23_RS24675 (KGP23_24595) | 89941..90684 | - | 744 | WP_223525125.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| KGP23_RS24680 (KGP23_24600) | 90693..92570 | - | 1878 | WP_223525128.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| KGP23_RS24685 (KGP23_24605) | 92567..93196 | - | 630 | WP_223525130.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| KGP23_RS24690 (KGP23_24610) | 93211..94158 | - | 948 | WP_185959448.1 | conjugal transfer pilus assembly protein TraU | - |
| KGP23_RS24695 (KGP23_24615) | 94211..94867 | - | 657 | WP_223525139.1 | type-F conjugative transfer system protein TraW | - |
| KGP23_RS24700 (KGP23_24620) | 94864..95211 | - | 348 | WP_149572002.1 | type-F conjugative transfer system protein TrbI | - |
| KGP23_RS24705 | 95208..95618 | - | 411 | WP_223525141.1 | hypothetical protein | - |
| KGP23_RS24710 (KGP23_24625) | 95724..98351 | - | 2628 | WP_197817171.1 | type IV secretion system protein TraC | - |
| KGP23_RS24715 (KGP23_24630) | 98344..98841 | - | 498 | WP_223525143.1 | conjugal transfer protein TraP | - |
| KGP23_RS24720 (KGP23_24635) | 98838..99077 | - | 240 | WP_223525145.1 | type IV secretory system conjugative DNA transfer family protein | - |
| KGP23_RS24725 (KGP23_24640) | 99074..99289 | - | 216 | WP_223525147.1 | hypothetical protein | - |
| KGP23_RS24730 (KGP23_24645) | 99436..99975 | - | 540 | WP_223525236.1 | type IV conjugative transfer system lipoprotein TraV | - |
| KGP23_RS24735 (KGP23_24650) | 100000..100386 | - | 387 | WP_223525148.1 | hypothetical protein | - |
| KGP23_RS24740 (KGP23_24655) | 100539..101933 | - | 1395 | WP_223525150.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| KGP23_RS24745 (KGP23_24660) | 101920..102624 | - | 705 | WP_245398313.1 | type-F conjugative transfer system secretin TraK | - |
| KGP23_RS24750 (KGP23_24665) | 102650..103216 | - | 567 | WP_223525154.1 | type IV conjugative transfer system protein TraE | - |
| KGP23_RS24755 (KGP23_24670) | 103231..103536 | - | 306 | WP_149572023.1 | type IV conjugative transfer system protein TraL | - |
| KGP23_RS24760 (KGP23_24675) | 103686..104036 | - | 351 | WP_149572022.1 | type IV conjugative transfer system pilin TraA | - |
| KGP23_RS24765 (KGP23_24680) | 104101..104430 | - | 330 | WP_244952594.1 | TraY domain-containing protein | - |
| KGP23_RS24770 | 104661..105050 | - | 390 | WP_223525156.1 | TraY domain-containing protein | - |
| KGP23_RS24775 (KGP23_24695) | 105381..106223 | + | 843 | WP_197817168.1 | helix-turn-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|