MGE detailed information
MGE type: Conjugative plasmid MGE length: 112026 bp
Accession: NZ_CP074138 Location: 1..112026 Organism: Serratia sp. JSRIV006 Replicon: plasmid pJSRIV006_1
Accession: NZ_CP074138 Location: 1..112026 Organism: Serratia sp. JSRIV006 Replicon: plasmid pJSRIV006_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGP16_RS26555 (KGP16_26480) | 619..834 | - | 216 | WP_223501671.1 | hypothetical protein | - |
| KGP16_RS26560 (KGP16_26485) | 928..1242 | - | 315 | WP_223501718.1 | theronine dehydrogenase | - |
| KGP16_RS26565 (KGP16_26490) | 1245..1967 | - | 723 | WP_223501672.1 | plasmid SOS inhibition protein A | - |
| KGP16_RS26570 (KGP16_26495) | 1964..2410 | - | 447 | WP_218520543.1 | conjugation system SOS inhibitor PsiB family protein | - |
| KGP16_RS26575 (KGP16_26500) | 2449..4491 | - | 2043 | WP_223501674.1 | ParB/RepB/Spo0J family partition protein | - |
| KGP16_RS26580 (KGP16_26505) | 4558..4794 | - | 237 | WP_218520541.1 | DUF905 family protein | - |
| KGP16_RS26585 (KGP16_26510) | 4850..5404 | - | 555 | WP_218520540.1 | single-stranded DNA-binding protein | - |
| KGP16_RS26590 (KGP16_26515) | 5714..5866 | + | 153 | WP_218520539.1 | hypothetical protein | - |
| KGP16_RS26595 (KGP16_26520) | 6261..6680 | + | 420 | WP_065684396.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| KGP16_RS26600 (KGP16_26525) | 6688..7947 | + | 1260 | WP_223501680.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| KGP16_RS26605 (KGP16_26530) | 8056..8448 | - | 393 | WP_223501681.1 | plasmid partitioning/stability family protein | - |
| KGP16_RS26610 (KGP16_26535) | 8451..9422 | - | 972 | WP_218520534.1 | plasmid segregation protein ParM | - |
| KGP16_RS26615 (KGP16_26540) | 9676..10059 | - | 384 | WP_223501682.1 | hypothetical protein | - |
| KGP16_RS26620 (KGP16_26545) | 10065..10694 | - | 630 | WP_065684391.1 | ParA family protein | - |
| KGP16_RS26625 (KGP16_26550) | 11216..11536 | - | 321 | WP_223501683.1 | hypothetical protein | - |
| KGP16_RS26630 (KGP16_26555) | 11639..12502 | - | 864 | WP_223501685.1 | DUF4942 domain-containing protein | - |
| KGP16_RS26635 (KGP16_26560) | 12582..12926 | - | 345 | WP_223501686.1 | hypothetical protein | - |
| KGP16_RS26640 | 13225..13335 | + | 111 | Protein_17 | hypothetical protein | - |
| KGP16_RS26645 (KGP16_26565) | 13750..14316 | - | 567 | WP_223501688.1 | methyltransferase | - |
| KGP16_RS26650 (KGP16_26570) | 14362..15738 | - | 1377 | WP_223501689.1 | DUF3560 domain-containing protein | - |
| KGP16_RS26655 (KGP16_26575) | 16474..16731 | - | 258 | WP_065684455.1 | hypothetical protein | - |
| KGP16_RS26660 (KGP16_26580) | 16812..17240 | - | 429 | WP_223501690.1 | antirestriction protein | - |
| KGP16_RS26665 (KGP16_26585) | 17561..19132 | - | 1572 | WP_223499771.1 | IS66 family transposase ISCro1 | Transposase |
| KGP16_RS26670 (KGP16_26590) | 19152..19499 | - | 348 | WP_223499772.1 | IS66 family transposase ISCro1 | Transposase |
| KGP16_RS26675 (KGP16_26595) | 19496..20113 | - | 618 | WP_223500317.1 | IS66 family transposase ISCro1 | Transposase |
| KGP16_RS26680 (KGP16_26600) | 20295..21095 | - | 801 | WP_218520530.1 | hypothetical protein | - |
| KGP16_RS26685 (KGP16_26605) | 21155..21568 | - | 414 | WP_218520529.1 | DUF1380 family protein | - |
| KGP16_RS26690 (KGP16_26610) | 21574..21798 | - | 225 | WP_065684381.1 | hypothetical protein | - |
| KGP16_RS26695 (KGP16_26615) | 21795..22478 | - | 684 | WP_065684380.1 | DNA methylase | - |
| KGP16_RS26700 (KGP16_26620) | 22848..23180 | - | 333 | WP_083196345.1 | hypothetical protein | - |
| KGP16_RS26705 (KGP16_26625) | 23183..23422 | - | 240 | WP_223501691.1 | hypothetical protein | - |
| KGP16_RS26710 (KGP16_26630) | 23975..25240 | + | 1266 | WP_223501720.1 | DUF1173 family protein | - |
| KGP16_RS26715 (KGP16_26635) | 25972..26409 | - | 438 | WP_223501692.1 | hypothetical protein | - |
| KGP16_RS26720 (KGP16_26640) | 26412..26894 | - | 483 | WP_223501693.1 | hypothetical protein | - |
| KGP16_RS26725 (KGP16_26645) | 27024..27347 | - | 324 | WP_223501695.1 | chromosome segregation protein ParM | - |
| KGP16_RS26730 (KGP16_26650) | 27331..27801 | - | 471 | WP_065684374.1 | hypothetical protein | - |
| KGP16_RS26735 (KGP16_26655) | 27863..28072 | - | 210 | WP_065684373.1 | hypothetical protein | - |
| KGP16_RS26740 (KGP16_26660) | 28076..28891 | - | 816 | WP_223501696.1 | tyrosine-type recombinase/integrase | - |
| KGP16_RS26745 (KGP16_26665) | 28934..29218 | - | 285 | WP_223501697.1 | hypothetical protein | - |
| KGP16_RS26750 (KGP16_26670) | 29252..29467 | - | 216 | WP_223501699.1 | hypothetical protein | - |
| KGP16_RS26755 (KGP16_26675) | 29454..29756 | - | 303 | WP_223501701.1 | hypothetical protein | - |
| KGP16_RS26760 (KGP16_26680) | 29850..30062 | - | 213 | WP_223501702.1 | hypothetical protein | - |
| KGP16_RS26765 (KGP16_26685) | 30122..30337 | - | 216 | WP_065684367.1 | hypothetical protein | - |
| KGP16_RS26770 (KGP16_26690) | 30852..31550 | - | 699 | WP_223501704.1 | IS6 family transposase ISEas1 | Transposase |
| KGP16_RS26775 (KGP16_26695) | 31578..32087 | + | 510 | WP_223499710.1 | Phospholipase D | VF |
| KGP16_RS26780 (KGP16_26700) | 32726..33058 | - | 333 | WP_223498387.1 | hypothetical protein | - |
| KGP16_RS26785 (KGP16_26705) | 33285..33542 | - | 258 | WP_223498386.1 | TraR/DksA family transcriptional regulator | - |
| KGP16_RS26795 (KGP16_26715) | 34246..34401 | - | 156 | Protein_47 | helix-turn-helix domain-containing protein | - |
| KGP16_RS26800 (KGP16_26720) | 34464..35162 | + | 699 | WP_223498385.1 | IS6 family transposase ISEas1 | Transposase |
| KGP16_RS26805 (KGP16_26725) | 35494..35982 | + | 489 | WP_223499785.1 | DUF2946 domain-containing protein | - |
| KGP16_RS26810 (KGP16_26730) | 36135..38267 | + | 2133 | WP_223499784.1 | TonB-dependent receptor | - |
| KGP16_RS26815 | 38473..38682 | - | 210 | Protein_51 | recombinase family protein | - |
| KGP16_RS26820 (KGP16_26740) | 38803..39498 | - | 696 | WP_223498400.1 | IS6 family transposase ISEas1 | Transposase |
| KGP16_RS26825 (KGP16_26745) | 39900..40859 | + | 960 | WP_223498399.1 | Recombination-promoting nuclease RpnA | VF |
| KGP16_RS26830 (KGP16_26750) | 40905..41561 | - | 657 | WP_223498398.1 | AAA family ATPase | - |
| KGP16_RS26835 (KGP16_26755) | 41607..42581 | - | 975 | WP_223498397.1 | IS30 family transposase IS4351 | Transposase |
| KGP16_RS26840 (KGP16_26760) | 42953..43132 | - | 180 | WP_223498396.1 | hypothetical protein | - |
| KGP16_RS26845 (KGP16_26765) | 43507..43764 | - | 258 | WP_223498395.1 | hypothetical protein | - |
| KGP16_RS26850 (KGP16_26770) | 43794..45017 | + | 1224 | WP_223501706.1 | IS91 family transposase ISVa3 | Transposase |
| KGP16_RS26855 (KGP16_26775) | 45276..46229 | - | 954 | WP_223501708.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| KGP16_RS26860 (KGP16_26780) | 46318..46830 | - | 513 | WP_223501710.1 | Protein FimG | VF |
| KGP16_RS26865 (KGP16_26785) | 46844..47374 | - | 531 | WP_223501722.1 | Protein FimF | VF |
| KGP16_RS26870 (KGP16_26790) | 47380..49965 | - | 2586 | WP_223500371.1 | Outer membrane usher protein FimD | VF |
| KGP16_RS26875 (KGP16_26795) | 50102..50746 | - | 645 | WP_223499712.1 | Chaperone protein FimC | VF |
| KGP16_RS26880 (KGP16_26800) | 50899..51441 | - | 543 | WP_024531355.1 | putative major fimbrial subunit LpfA | VF |
| KGP16_RS26885 (KGP16_26805) | 51510..52079 | - | 570 | WP_223498391.1 | Fimbrial subunit type 1 | VF |
| KGP16_RS26890 (KGP16_26810) | 52582..52977 | - | 396 | WP_223501712.1 | hypothetical protein | - |
| KGP16_RS26895 (KGP16_26815) | 53507..54348 | - | 842 | Protein_67 | ISKra4 family transposase ISKpn19 | Transposase |
| KGP16_RS26900 (KGP16_26820) | 54528..55073 | - | 546 | WP_245398329.1 | plasmid pRiA4b ORF-3 family protein | - |
| KGP16_RS26905 (KGP16_26825) | 55428..55697 | - | 270 | WP_223501714.1 | hypothetical protein | - |
| KGP16_RS26910 (KGP16_26830) | 55810..56133 | - | 324 | WP_223501716.1 | hypothetical protein | - |
| KGP16_RS26915 (KGP16_26835) | 56184..56495 | - | 312 | WP_223501591.1 | hypothetical protein | - |
| KGP16_RS26920 (KGP16_26840) | 56509..56841 | - | 333 | WP_223501592.1 | endoribonuclease MazF | Toxin Detail |
| KGP16_RS26925 (KGP16_26845) | 56841..57086 | - | 246 | WP_223501593.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| KGP16_RS26930 (KGP16_26850) | 57577..58716 | + | 1140 | WP_223501594.1 | colicin-like pore-forming protein | - |
| KGP16_RS26935 (KGP16_26855) | 58727..59071 | - | 345 | WP_223501596.1 | colicin E1 immunity protein | - |
| KGP16_RS26940 (KGP16_26860) | 59877..60146 | - | 270 | WP_223501598.1 | hypothetical protein | - |
| KGP16_RS26945 (KGP16_26865) | 60425..60661 | - | 237 | WP_223501600.1 | hypothetical protein | - |
| KGP16_RS26950 (KGP16_26870) | 60734..61591 | - | 858 | WP_223501602.1 | hypothetical protein | - |
| KGP16_RS26955 (KGP16_26875) | 61931..62425 | - | 495 | WP_223501603.1 | hypothetical protein | - |
| KGP16_RS26960 (KGP16_26880) | 62635..63462 | - | 828 | WP_223501604.1 | phosphoenolpyruvate hydrolase family protein | - |
| KGP16_RS26965 (KGP16_26885) | 63459..64715 | - | 1257 | WP_223501605.1 | Tm-1-like ATP-binding domain-containing protein | - |
| KGP16_RS26970 (KGP16_26890) | 64847..65464 | + | 618 | WP_218520517.1 | TetR/AcrR family transcriptional regulator | - |
| KGP16_RS26975 (KGP16_26895) | 65651..65989 | - | 339 | WP_218520576.1 | DUF2645 family protein | - |
| KGP16_RS26980 (KGP16_26900) | 65986..66708 | - | 723 | WP_218520575.1 | hypothetical protein | - |
| KGP16_RS26985 (KGP16_26905) | 66723..67202 | - | 480 | WP_218520574.1 | Major exported protein | VF |
| KGP16_RS26990 (KGP16_26910) | 68335..69273 | - | 939 | WP_223501723.1 | Replication protein | - |
| KGP16_RS27580 | 69430..69600 | - | 171 | Protein_87 | protein CopA/IncA | - |
| KGP16_RS27000 (KGP16_26920) | 69716..69976 | - | 261 | WP_223501606.1 | replication regulatory protein RepA | - |
| KGP16_RS27005 (KGP16_26925) | 70166..70672 | - | 507 | WP_223501725.1 | Phospholipase D | VF |
| KGP16_RS27010 | 70951..71259 | - | 309 | WP_223501608.1 | hypothetical protein | - |
| KGP16_RS27015 (KGP16_26930) | 71322..71738 | - | 417 | WP_223501609.1 | hypothetical protein | - |
| KGP16_RS27020 (KGP16_26935) | 71802..72539 | - | 738 | WP_223501611.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| KGP16_RS27025 (KGP16_26940) | 72541..77787 | - | 5247 | WP_223501614.1 | Multifunctional conjugation protein TraI | Relaxase |
| KGP16_RS27030 (KGP16_26945) | 77787..79982 | - | 2196 | WP_223501617.1 | type IV conjugative transfer system coupling protein TraD | - |
| KGP16_RS27035 (KGP16_26950) | 80276..80791 | - | 516 | WP_223501618.1 | hypothetical protein | - |
| KGP16_RS27040 (KGP16_26955) | 80800..83628 | - | 2829 | WP_223501619.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| KGP16_RS27045 (KGP16_26960) | 83628..84995 | - | 1368 | WP_223501620.1 | conjugal transfer pilus assembly protein TraH | - |
| KGP16_RS27050 (KGP16_26965) | 84992..85558 | - | 567 | WP_223501621.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| KGP16_RS27055 (KGP16_26970) | 85548..85811 | - | 264 | WP_223501623.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| KGP16_RS27060 (KGP16_26975) | 85828..86571 | - | 744 | WP_223501625.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| KGP16_RS27065 (KGP16_26980) | 86581..88455 | - | 1875 | WP_179251073.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| KGP16_RS27070 (KGP16_26985) | 88452..89081 | - | 630 | WP_223501626.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| KGP16_RS27075 (KGP16_26990) | 89096..90043 | - | 948 | WP_223501726.1 | conjugal transfer pilus assembly protein TraU | - |
| KGP16_RS27080 (KGP16_26995) | 90096..90752 | - | 657 | WP_223501627.1 | type-F conjugative transfer system protein TraW | - |
| KGP16_RS27085 (KGP16_27000) | 90749..91096 | - | 348 | WP_218520561.1 | type-F conjugative transfer system protein TrbI | - |
| KGP16_RS27090 (KGP16_27005) | 91093..91503 | - | 411 | WP_223501629.1 | hypothetical protein | - |
| KGP16_RS27095 (KGP16_27010) | 91610..94237 | - | 2628 | WP_223501630.1 | type IV secretion system protein TraC | - |
| KGP16_RS27100 (KGP16_27015) | 94230..94727 | - | 498 | WP_223501632.1 | conjugal transfer protein TraP | - |
| KGP16_RS27105 (KGP16_27020) | 94724..94963 | - | 240 | WP_223501634.1 | hypothetical protein | - |
| KGP16_RS27110 (KGP16_27025) | 95100..95642 | - | 543 | WP_223501637.1 | type IV conjugative transfer system lipoprotein TraV | - |
| KGP16_RS27115 (KGP16_27030) | 95664..97058 | - | 1395 | WP_223501639.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| KGP16_RS27120 (KGP16_27035) | 97045..97749 | - | 705 | WP_245398438.1 | type-F conjugative transfer system secretin TraK | - |
| KGP16_RS27125 (KGP16_27040) | 97775..98341 | - | 567 | WP_223501642.1 | type IV conjugative transfer system protein TraE | - |
| KGP16_RS27130 (KGP16_27045) | 98356..98661 | - | 306 | WP_065684418.1 | type IV conjugative transfer system protein TraL | - |
| KGP16_RS27135 (KGP16_27050) | 98811..99161 | - | 351 | WP_223501643.1 | type IV conjugative transfer system pilin TraA | - |
| KGP16_RS27140 (KGP16_27055) | 99214..99432 | - | 219 | WP_223501644.1 | TraY domain-containing protein | - |
| KGP16_RS27145 (KGP16_27060) | 99785..99997 | - | 213 | WP_223501645.1 | TraY domain-containing protein | - |
| KGP16_RS27150 (KGP16_27065) | 100162..100755 | + | 594 | WP_223501646.1 | helix-turn-helix transcriptional regulator | - |
| KGP16_RS27155 (KGP16_27070) | 100755..101618 | + | 864 | WP_223501647.1 | queuosine precursor transporter | - |
| KGP16_RS27160 (KGP16_27075) | 101629..102444 | + | 816 | WP_223501649.1 | NADPH-dependent 7-cyano-7-deazaguanine reductase QueF | - |
| KGP16_RS27165 (KGP16_27080) | 102479..102688 | - | 210 | WP_223501650.1 | hypothetical protein | - |
| KGP16_RS27170 (KGP16_27085) | 102761..103069 | - | 309 | Protein_122 | plasmid replication initiator TrfA | - |
| KGP16_RS27175 (KGP16_27090) | 103224..103598 | - | 375 | WP_223501652.1 | hypothetical protein | - |
| KGP16_RS27180 (KGP16_27095) | 104635..104838 | + | 204 | WP_223501659.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| KGP16_RS27185 (KGP16_27100) | 104838..105215 | + | 378 | WP_223501661.1 | VapC toxin family PIN domain ribonuclease | - |
| KGP16_RS27190 (KGP16_27105) | 105297..105890 | + | 594 | WP_223501663.1 | hypothetical protein | - |
| KGP16_RS27195 (KGP16_27110) | 106242..106586 | - | 345 | WP_223501665.1 | hypothetical protein | - |
| KGP16_RS27200 (KGP16_27115) | 106778..107173 | - | 396 | WP_223501666.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| KGP16_RS27205 (KGP16_27120) | 107596..108084 | + | 489 | WP_223501667.1 | hypothetical protein | VF |
| KGP16_RS27210 (KGP16_27125) | 108332..109201 | - | 870 | WP_223501668.1 | hypothetical protein | - |
| KGP16_RS27215 (KGP16_27130) | 110037..110702 | - | 666 | WP_223501669.1 | N-6 DNA methylase | - |
| KGP16_RS27220 (KGP16_27135) | 110886..111032 | - | 147 | WP_218520548.1 | succinate dehydrogenase flavoprotein subunit | - |
| KGP16_RS27225 (KGP16_27140) | 111123..111473 | - | 351 | WP_218520547.1 | hypothetical protein | - |
| KGP16_RS27230 (KGP16_27145) | 111521..111976 | - | 456 | WP_223501670.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|