MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 34472 bp
Accession: NZ_CP072856 Location: 2805452..2839923 Organism: Lonsdalea populi strain N-5-1 Replicon: chromosome
Accession: NZ_CP072856 Location: 2805452..2839923 Organism: Lonsdalea populi strain N-5-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8X70_RS12535 | 2800995..2801651 | - | 657 | WP_026741054.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| J8X70_RS12540 | 2802278..2802502 | + | 225 | WP_085689679.1 | DUF2594 family protein | - |
| J8X70_RS12550 | 2803219..2804625 | + | 1407 | WP_085689681.1 | D-serine/D-alanine/glycine transporter | - |
| J8X70_RS12555 | 2804755..2805021 | - | 267 | Protein_2435 | LysR family transcriptional regulator | - |
| J8X70_RS12565 | 2805630..2806901 | + | 1272 | WP_085689683.1 | Prophage integrase IntA ; Integrase | Integrase |
| J8X70_RS12570 | 2807035..2807349 | - | 315 | WP_025918867.1 | helix-turn-helix transcriptional regulator | - |
| J8X70_RS12575 | 2807535..2807849 | - | 315 | WP_085689685.1 | helix-turn-helix transcriptional regulator | - |
| J8X70_RS12580 | 2807996..2808277 | + | 282 | WP_085689687.1 | helix-turn-helix transcriptional regulator | - |
| J8X70_RS12585 | 2808692..2809606 | + | 915 | WP_085689689.1 | hypothetical protein | - |
| J8X70_RS12590 | 2809760..2809954 | + | 195 | WP_039359985.1 | AlpA family transcriptional regulator | - |
| J8X70_RS12595 | 2809971..2810555 | + | 585 | WP_085689691.1 | DUF2857 domain-containing protein | - |
| J8X70_RS12600 | 2810545..2810754 | + | 210 | WP_014699379.1 | TraR/DksA family transcriptional regulator | - |
| J8X70_RS12605 | 2811214..2812530 | + | 1317 | WP_085689692.1 | hypothetical protein | - |
| J8X70_RS12610 | 2812514..2813218 | + | 705 | WP_085689694.1 | hypothetical protein | - |
| J8X70_RS12615 | 2813202..2815556 | + | 2355 | WP_085689696.1 | AAA family ATPase | - |
| J8X70_RS12620 | 2815957..2816187 | - | 231 | WP_139829945.1 | hypothetical protein | - |
| J8X70_RS12625 | 2816341..2816553 | - | 213 | WP_139829946.1 | hypothetical protein | - |
| J8X70_RS12630 | 2817164..2817385 | + | 222 | WP_085689699.1 | hypothetical protein | - |
| J8X70_RS12635 | 2817459..2818124 | + | 666 | WP_085689701.1 | Type IV secretion system protein virB1 | VF |
| J8X70_RS12640 | 2818121..2818402 | + | 282 | WP_099017452.1 | TrbC/VirB2 family protein | - |
| J8X70_RS12645 | 2818412..2821159 | + | 2748 | WP_085689703.1 | Type IV secretion system protein virB4 | VF |
| J8X70_RS12650 | 2821183..2821899 | + | 717 | WP_085689705.1 | type IV secretion system protein | - |
| J8X70_RS12655 | 2821910..2822134 | + | 225 | WP_085689707.1 | EexN family lipoprotein | - |
| J8X70_RS12660 | 2822146..2823186 | + | 1041 | WP_085689709.1 | type IV secretion system protein | - |
| J8X70_RS12665 | 2823274..2823414 | + | 141 | WP_176222567.1 | hypothetical protein | - |
| J8X70_RS12670 | 2823407..2824090 | + | 684 | WP_085689711.1 | Type IV secretion system protein PtlE | VF |
| J8X70_RS12675 | 2824087..2824980 | + | 894 | WP_176222568.1 | P-type conjugative transfer protein VirB9 | - |
| J8X70_RS12680 | 2824977..2826209 | + | 1233 | WP_085689713.1 | Type IV secretion system protein virB10 | VF |
| J8X70_RS12685 | 2826199..2827215 | + | 1017 | WP_085689715.1 | Type IV secretion system protein VirB11 | VF |
| J8X70_RS12690 | 2827259..2827561 | + | 303 | WP_085689717.1 | conjugal transfer protein | - |
| J8X70_RS12695 | 2828359..2830095 | + | 1737 | WP_085689719.1 | type IV secretory system conjugative DNA transfer family protein | - |
| J8X70_RS12700 | 2830104..2830856 | + | 753 | WP_085689721.1 | MobC family replication-relaxation protein | - |
| J8X70_RS12705 | 2830890..2831204 | - | 315 | WP_039360030.1 | CcdB family protein | Toxin Detail |
| J8X70_RS12710 | 2831207..2831443 | - | 237 | WP_029729596.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| J8X70_RS12715 | 2831763..2832016 | - | 254 | Protein_2466 | zincin-like metallopeptidase domain-containing protein | - |
| J8X70_RS12720 | 2832429..2833514 | + | 1086 | WP_085689723.1 | SIR2 family protein | - |
| J8X70_RS12725 | 2833516..2834889 | + | 1374 | WP_232100004.1 | ATP-binding protein | - |
| J8X70_RS12735 | 2836084..2836416 | + | 333 | Protein_2470 | IS3 family transposase ISEc14 | Transposase |
| J8X70_RS12740 | 2836499..2836750 | + | 252 | Protein_2471 | IS30 family transposase | - |
| J8X70_RS12745 | 2836866..2837960 | - | 1095 | WP_085690239.1 | hypothetical protein | - |
| J8X70_RS12750 | 2838478..2839593 | + | 1116 | WP_085690241.1 | DUF2971 domain-containing protein | - |
| J8X70_RS12755 | 2840090..2841353 | + | 1264 | Protein_2474 | integrase arm-type DNA-binding domain-containing protein | - |
| J8X70_RS12760 | 2841530..2842667 | + | 1138 | Protein_2475 | IS3 family transposase | - |
| J8X70_RS12765 | 2843086..2844003 | + | 918 | WP_085689842.1 | Gfo/Idh/MocA family oxidoreductase | - |
| J8X70_RS12770 | 2843983..2844156 | - | 174 | WP_176222572.1 | hypothetical protein | - |
| J8X70_RS12775 | 2844173..2844817 | - | 645 | WP_085689834.1 | LysE family translocator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|