MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 56340 bp
Accession: NZ_CP072856 Location: 1302205..1358544 Organism: Lonsdalea populi strain N-5-1 Replicon: chromosome
Accession: NZ_CP072856 Location: 1302205..1358544 Organism: Lonsdalea populi strain N-5-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8X70_RS05915 | 1298690..1299805 | + | 1116 | WP_085686858.1 | type II secretion system F family protein | - |
| J8X70_RS05920 | 1299816..1300412 | + | 597 | WP_085686856.1 | type 4 pilus major pilin | - |
| J8X70_RS05925 | 1300417..1300896 | + | 480 | WP_085686855.1 | lytic transglycosylase domain-containing protein | - |
| J8X70_RS05930 | 1300893..1301582 | + | 690 | WP_085686853.1 | prepilin peptidase | - |
| J8X70_RS05935 | 1301588..1302883 | + | 1296 | WP_232100112.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| J8X70_RS05940 | 1302989..1303846 | + | 858 | WP_085686849.1 | plasmid transfer protein | - |
| J8X70_RS05945 | 1303864..1304577 | + | 714 | WP_085686888.1 | TIGR03759 family integrating conjugative element protein | - |
| J8X70_RS05950 | 1304556..1305167 | + | 612 | WP_085686847.1 | hypothetical protein | VF |
| J8X70_RS05955 | 1305164..1305694 | + | 531 | WP_085686845.1 | integrating conjugative element protein | - |
| J8X70_RS05960 | 1305747..1306136 | + | 390 | WP_085686843.1 | hypothetical protein | - |
| J8X70_RS05965 | 1306238..1308349 | + | 2112 | WP_085686841.1 | type IV conjugative transfer system coupling protein TraD | - |
| J8X70_RS05970 | 1308336..1309097 | + | 762 | WP_085686839.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| J8X70_RS05975 | 1309220..1309537 | + | 318 | WP_085686837.1 | RAQPRD family integrative conjugative element protein | - |
| J8X70_RS05980 | 1309528..1309773 | + | 246 | WP_085686835.1 | TIGR03758 family integrating conjugative element protein | - |
| J8X70_RS05985 | 1309786..1310148 | + | 363 | WP_085686833.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| J8X70_RS05990 | 1310158..1310532 | + | 375 | WP_085686831.1 | TIGR03750 family conjugal transfer protein | - |
| J8X70_RS05995 | 1310529..1311173 | + | 645 | WP_085686829.1 | TIGR03746 family integrating conjugative element protein | - |
| J8X70_RS06000 | 1311173..1312078 | + | 906 | WP_085686827.1 | TIGR03749 family integrating conjugative element protein | - |
| J8X70_RS06005 | 1312078..1313598 | + | 1521 | WP_085686825.1 | TIGR03752 family integrating conjugative element protein | - |
| J8X70_RS06010 | 1313610..1313864 | + | 255 | WP_085686823.1 | hypothetical protein | - |
| J8X70_RS06015 | 1313857..1314273 | + | 417 | WP_085686821.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| J8X70_RS06020 | 1314273..1317077 | + | 2805 | WP_085686819.1 | conjugative transfer ATPase | - |
| J8X70_RS06025 | 1317089..1317493 | + | 405 | WP_085686817.1 | hypothetical protein | - |
| J8X70_RS06030 | 1317798..1318133 | - | 336 | WP_085686815.1 | hypothetical protein | - |
| J8X70_RS06035 | 1318301..1318492 | - | 192 | WP_139829921.1 | IS3 family transposase ISKpn20 | Transposase |
| J8X70_RS06040 | 1318610..1319017 | + | 408 | WP_085686811.1 | TIGR03757 family integrating conjugative element protein | - |
| J8X70_RS06045 | 1319014..1319973 | + | 960 | WP_085686809.1 | TIGR03756 family integrating conjugative element protein | - |
| J8X70_RS06050 | 1319985..1321406 | + | 1422 | WP_112111539.1 | integrating conjugative element protein | - |
| J8X70_RS06055 | 1321408..1321746 | + | 339 | WP_085686808.1 | hypothetical protein | - |
| J8X70_RS06060 | 1321757..1323304 | + | 1548 | WP_085686806.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| J8X70_RS06065 | 1323356..1323634 | - | 279 | WP_085686804.1 | hypothetical protein | - |
| J8X70_RS06070 | 1323967..1325085 | + | 1119 | WP_085686802.1 | DUF3289 family protein | - |
| J8X70_RS06075 | 1325082..1325768 | + | 687 | WP_085686800.1 | hypothetical protein | - |
| J8X70_RS06080 | 1327094..1328002 | + | 909 | WP_085686798.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| J8X70_RS06085 | 1328262..1331015 | + | 2754 | WP_085686796.1 | AAA family ATPase | - |
| J8X70_RS06090 | 1331337..1332887 | - | 1551 | WP_085686794.1 | hypothetical protein | - |
| J8X70_RS06095 | 1333287..1335071 | - | 1785 | WP_085686792.1 | DUF4209 domain-containing protein | - |
| J8X70_RS06100 | 1335515..1335832 | + | 318 | WP_085686790.1 | hypothetical protein | - |
| J8X70_RS06105 | 1335939..1336358 | + | 420 | WP_085686788.1 | hypothetical protein | - |
| J8X70_RS06110 | 1336456..1336764 | + | 309 | WP_085686786.1 | hypothetical protein | - |
| J8X70_RS06115 | 1336842..1337453 | + | 612 | WP_085686784.1 | hypothetical protein | - |
| J8X70_RS06120 | 1337603..1338550 | + | 948 | WP_085686783.1 | DUF1281 domain-containing protein | - |
| J8X70_RS06125 | 1338675..1339373 | + | 699 | WP_085686781.1 | N-6 DNA methylase | - |
| J8X70_RS06130 | 1339517..1340050 | - | 534 | WP_085686779.1 | hypothetical protein | - |
| J8X70_RS06135 | 1340104..1341309 | - | 1206 | WP_085686777.1 | conjugal transfer protein TraF | - |
| J8X70_RS06140 | 1341465..1342349 | - | 885 | WP_085686775.1 | conjugal transfer protein TraE | - |
| J8X70_RS06145 | 1343255..1344832 | + | 1578 | WP_232100115.1 | TraI domain-containing protein | - |
| J8X70_RS06150 | 1344868..1345824 | + | 957 | WP_085686771.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| J8X70_RS06155 | 1346390..1347106 | - | 717 | WP_085686769.1 | SprT family zinc-dependent metalloprotease | - |
| J8X70_RS06160 | 1347106..1350201 | - | 3096 | WP_085686767.1 | HsdR family type I site-specific deoxyribonuclease | - |
| J8X70_RS06165 | 1350222..1351289 | - | 1068 | WP_085686765.1 | macro domain-containing protein | Antitoxin Detail |
| J8X70_RS06170 | 1351286..1351942 | - | 657 | WP_085686763.1 | DUF4433 domain-containing protein | Toxin Detail |
| J8X70_RS06175 | 1351955..1353316 | - | 1362 | WP_085686884.1 | restriction endonuclease subunit S | - |
| J8X70_RS06180 | 1353316..1355760 | - | 2445 | WP_085686761.1 | type I restriction-modification system subunit M | - |
| J8X70_RS06185 | 1355801..1356040 | - | 240 | WP_085686759.1 | transcription factor | - |
| J8X70_RS06190 | 1356441..1356902 | + | 462 | WP_085686757.1 | hypothetical protein | - |
| J8X70_RS06195 | 1356899..1357120 | + | 222 | WP_085686755.1 | helix-turn-helix transcriptional regulator | - |
| J8X70_RS06200 | 1357889..1358770 | + | 882 | Protein_1195 | integrase domain-containing protein | - |
| J8X70_RS06205 | 1359065..1360324 | - | 1260 | WP_085686753.1 | integrase arm-type DNA-binding domain-containing protein | - |
| J8X70_RS06215 | 1361171..1363324 | + | 2154 | WP_085686751.1 | ornithine decarboxylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|