MGE detailed information
MGE type: Conjugative plasmid MGE length: 75715 bp
Accession: NZ_CP072561 Location: 1..75715 Organism: Pseudomonas sp. BYT-1 Replicon: plasmid pBYT1-2
Accession: NZ_CP072561 Location: 1..75715 Organism: Pseudomonas sp. BYT-1 Replicon: plasmid pBYT1-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5X93_RS27615 | 326..566 | - | 241 | Protein_0 | hypothetical protein | - |
| J5X93_RS27620 (J5X93_27490) | 759..1211 | - | 453 | WP_250036164.1 | nuclear transport factor 2 family protein | - |
| J5X93_RS27625 (J5X93_27495) | 1933..3168 | + | 1236 | WP_250036189.1 | IS21 family transposase | - |
| J5X93_RS27630 (J5X93_27500) | 3168..3566 | + | 399 | Protein_3 | ATP-binding protein | - |
| J5X93_RS27635 (J5X93_27505) | 4329..5174 | - | 846 | WP_250036162.1 | cupin domain-containing protein | - |
| J5X93_RS27640 (J5X93_27510) | 5648..6107 | + | 460 | Protein_5 | transposase | - |
| J5X93_RS27645 | 6155..6362 | - | 208 | Protein_6 | hypothetical protein | - |
| J5X93_RS28355 (J5X93_27515) | 6464..6616 | + | 153 | WP_284454601.1 | Tn3 family transposase | - |
| J5X93_RS27650 (J5X93_27520) | 6582..7280 | + | 699 | Protein_8 | Tn3 family transposase | - |
| J5X93_RS27655 (J5X93_27525) | 7424..8017 | + | 594 | Protein_9 | FAD-dependent oxidoreductase | - |
| J5X93_RS27660 (J5X93_27530) | 8126..9673 | + | 1548 | WP_076205821.1 | IS91-like element ISPps1 family transposase | - |
| J5X93_RS27665 (J5X93_27535) | 9839..10507 | + | 669 | WP_237306186.1 | recombinase family protein | - |
| J5X93_RS27670 (J5X93_27540) | 10574..11005 | - | 432 | WP_005797960.1 | EamA family transporter | - |
| J5X93_RS27675 (J5X93_27545) | 11034..12386 | - | 1353 | WP_029310059.1 | ATP-binding protein | - |
| J5X93_RS27680 (J5X93_27550) | 12362..13027 | - | 666 | WP_005797956.1 | response regulator transcription factor | - |
| J5X93_RS27685 (J5X93_27555) | 13050..13808 | - | 759 | WP_011875625.1 | membrane protein | - |
| J5X93_RS27690 (J5X93_27560) | 13818..14267 | - | 450 | WP_076205818.1 | hypothetical protein | - |
| J5X93_RS27695 (J5X93_27565) | 14297..15079 | - | 783 | WP_005797951.1 | membrane protein | - |
| J5X93_RS27700 (J5X93_27570) | 15150..15746 | - | 597 | WP_011517526.1 | undecaprenyl-diphosphatase | - |
| J5X93_RS27705 (J5X93_27575) | 15803..16138 | - | 336 | WP_005797945.1 | PepSY domain-containing protein | - |
| J5X93_RS27710 (J5X93_27580) | 16459..16839 | - | 381 | WP_250036155.1 | hypothetical protein | - |
| J5X93_RS27715 (J5X93_27585) | 16836..17399 | - | 564 | WP_021561445.1 | recombinase family protein | - |
| J5X93_RS27720 (J5X93_27590) | 17635..17955 | - | 321 | WP_021561444.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| J5X93_RS27725 (J5X93_27595) | 17955..18170 | - | 216 | WP_021561443.1 | antitoxin MazE family protein | Antitoxin Detail |
| J5X93_RS27730 (J5X93_27600) | 18459..19214 | + | 756 | WP_232476757.1 | recombinase family protein | - |
| J5X93_RS27735 (J5X93_27605) | 19216..19890 | - | 675 | WP_011178411.1 | DNA methylase | - |
| J5X93_RS27740 (J5X93_27610) | 20045..20476 | - | 432 | WP_001665065.1 | OmpA family protein | - |
| J5X93_RS27745 (J5X93_27615) | 20492..21190 | - | 699 | WP_011114053.1 | TraX family protein | - |
| J5X93_RS27750 (J5X93_27620) | 21190..21456 | - | 267 | WP_010890140.1 | hypothetical protein | - |
| J5X93_RS27755 (J5X93_27625) | 21485..22120 | - | 636 | WP_011114052.1 | transglycosylase SLT domain-containing protein | - |
| J5X93_RS27760 (J5X93_27630) | 22134..22721 | - | 588 | WP_010890138.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| J5X93_RS27765 (J5X93_27635) | 22739..24457 | - | 1719 | WP_011114051.1 | P-type conjugative transfer protein TrbL | - |
| J5X93_RS27770 (J5X93_27640) | 24468..24695 | - | 228 | WP_000644148.1 | entry exclusion lipoprotein TrbK | - |
| J5X93_RS27775 (J5X93_27645) | 24705..25469 | - | 765 | WP_010890135.1 | P-type conjugative transfer protein TrbJ | - |
| J5X93_RS27780 (J5X93_27650) | 25490..26911 | - | 1422 | WP_011114050.1 | TrbI/VirB10 family protein | - |
| J5X93_RS27785 (J5X93_27655) | 26916..27404 | - | 489 | WP_006122479.1 | conjugal transfer protein TrbH | - |
| J5X93_RS27790 (J5X93_27660) | 27407..28306 | - | 900 | WP_006122480.1 | P-type conjugative transfer protein TrbG | - |
| J5X93_RS27795 (J5X93_27665) | 28324..29106 | - | 783 | WP_006122481.1 | conjugal transfer protein TrbF | - |
| J5X93_RS27800 (J5X93_27670) | 29103..31661 | - | 2559 | WP_011114047.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| J5X93_RS27805 (J5X93_27675) | 31658..31969 | - | 312 | WP_001207961.1 | conjugal transfer protein TrbD | - |
| J5X93_RS27810 (J5X93_27680) | 31973..32437 | - | 465 | WP_011114046.1 | conjugal transfer system pilin TrbC | - |
| J5X93_RS27815 (J5X93_27685) | 32454..33416 | - | 963 | WP_000132020.1 | P-type conjugative transfer ATPase TrbB | - |
| J5X93_RS27820 (J5X93_27690) | 33726..34088 | - | 363 | WP_010890126.1 | transcriptional regulator | - |
| J5X93_RS27825 (J5X93_27695) | 34202..34543 | + | 342 | WP_000019167.1 | single-stranded DNA-binding protein | - |
| J5X93_RS27830 (J5X93_27700) | 34590..35810 | + | 1221 | WP_011114072.1 | plasmid replication initiator TrfA | - |
| J5X93_RS27835 (J5X93_27705) | 37133..37447 | - | 315 | WP_011117139.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| J5X93_RS27840 (J5X93_27710) | 37444..37713 | - | 270 | WP_001260984.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| J5X93_RS27845 (J5X93_27715) | 37882..38310 | + | 429 | WP_001095942.1 | antirestriction protein | - |
| J5X93_RS27850 (J5X93_27720) | 38362..39567 | + | 1206 | WP_011405605.1 | protein KlcB | - |
| J5X93_RS27855 (J5X93_27725) | 39584..39841 | + | 258 | WP_011117141.1 | transcriptional repressor KorC | - |
| J5X93_RS27860 (J5X93_27730) | 40001..40237 | + | 237 | WP_000041932.1 | stable inheritance protein KleA | - |
| J5X93_RS27865 (J5X93_27735) | 40296..40511 | + | 216 | WP_010890114.1 | DUF2688 domain-containing protein | - |
| J5X93_RS27870 (J5X93_27740) | 40656..40985 | + | 330 | WP_010890113.1 | KleE stable inheritance protein | - |
| J5X93_RS27875 (J5X93_27745) | 40987..41517 | + | 531 | WP_011117143.1 | DUF2761 domain-containing protein | - |
| J5X93_RS27880 (J5X93_27750) | 41631..41933 | + | 303 | WP_010890110.1 | transcriptional regulator KorA | - |
| J5X93_RS27885 (J5X93_27755) | 41930..42694 | + | 765 | WP_000855329.1 | ParA family protein | - |
| J5X93_RS27890 (J5X93_27760) | 42691..43740 | + | 1050 | WP_011114060.1 | ParB/RepB/Spo0J family partition protein | - |
| J5X93_RS27895 (J5X93_27765) | 43920..44951 | + | 1032 | WP_011117145.1 | DNA-binding protein | - |
| J5X93_RS27900 (J5X93_27770) | 45122..45469 | + | 348 | WP_000664557.1 | hypothetical protein | - |
| J5X93_RS27905 (J5X93_27775) | 45498..46151 | + | 654 | WP_000826922.1 | hypothetical protein | - |
| J5X93_RS27910 (J5X93_27780) | 46354..46794 | - | 441 | WP_000718516.1 | conjugal transfer protein TraM | - |
| J5X93_RS27915 (J5X93_27785) | 46794..47519 | - | 726 | WP_001062597.1 | AAA family ATPase | - |
| J5X93_RS27920 (J5X93_27790) | 47519..47917 | - | 399 | WP_001127128.1 | TraK family protein | - |
| J5X93_RS27925 (J5X93_27795) | 48291..48665 | + | 375 | WP_000426567.1 | conjugal transfer transcriptional regulator TraJ | - |
| J5X93_RS27930 (J5X93_27800) | 48700..50940 | + | 2241 | WP_011117146.1 | relaxase/mobilization nuclease domain-containing protein | - |
| J5X93_RS27935 (J5X93_27805) | 50937..52850 | + | 1914 | WP_000694765.1 | type IV secretory system conjugative DNA transfer family protein | - |
| J5X93_RS27940 (J5X93_27810) | 52847..53383 | + | 537 | WP_006122512.1 | conjugative transfer signal peptidase TraF | - |
| J5X93_RS27945 (J5X93_27815) | 53395..55458 | + | 2064 | WP_011114056.1 | DNA topoisomerase III | - |
| J5X93_RS27950 (J5X93_27820) | 55480..55869 | + | 390 | WP_006122510.1 | protein TraD | - |
| J5X93_RS27955 (J5X93_27825) | 55873..60219 | + | 4347 | WP_011117147.1 | zincin-like metallopeptidase domain-containing protein | - |
| J5X93_RS27960 (J5X93_27830) | 60510..63425 | + | 2916 | WP_250036157.1 | Tn3-like element IS1071 family transposase | - |
| J5X93_RS27965 (J5X93_27835) | 63569..64162 | + | 594 | Protein_71 | FAD-dependent oxidoreductase | - |
| J5X93_RS27970 (J5X93_27840) | 64271..65818 | + | 1548 | WP_076205821.1 | IS91-like element ISPps1 family transposase | - |
| J5X93_RS27975 | 66256..66496 | - | 241 | Protein_73 | hypothetical protein | - |
| J5X93_RS27980 (J5X93_27845) | 66689..67141 | - | 453 | WP_250036164.1 | nuclear transport factor 2 family protein | - |
| J5X93_RS27985 (J5X93_27850) | 67863..69098 | + | 1236 | WP_250036189.1 | IS21 family transposase | - |
| J5X93_RS27990 (J5X93_27855) | 69098..69496 | + | 399 | Protein_76 | ATP-binding protein | - |
| J5X93_RS27995 (J5X93_27860) | 70259..71104 | - | 846 | WP_250036162.1 | cupin domain-containing protein | - |
| J5X93_RS28000 (J5X93_27865) | 71578..72037 | + | 460 | Protein_78 | transposase | - |
| J5X93_RS28005 | 72085..72292 | - | 208 | Protein_79 | hypothetical protein | - |
| J5X93_RS28360 (J5X93_27870) | 72394..72546 | + | 153 | WP_284454601.1 | Tn3 family transposase | - |
| J5X93_RS28010 (J5X93_27875) | 72512..73210 | + | 699 | Protein_81 | Tn3 family transposase | - |
| J5X93_RS28015 (J5X93_27880) | 73354..73947 | + | 594 | Protein_82 | FAD-dependent oxidoreductase | - |
| J5X93_RS28020 (J5X93_27885) | 74056..75603 | + | 1548 | WP_076205821.1 | IS91-like element ISPps1 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|