MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 98509 bp
Accession: NZ_CP072455 Location: 583529..682037 Organism: Xenorhabdus budapestensis strain C-7-2 Replicon: chromosome
Accession: NZ_CP072455 Location: 583529..682037 Organism: Xenorhabdus budapestensis strain C-7-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGO23_RS02485 (HGO23_02485) | 579449..580750 | + | 1302 | WP_099137329.1 | anaerobic C4-dicarboxylate transporter | - |
| HGO23_RS02490 (HGO23_02490) | 580986..582737 | + | 1752 | WP_209027861.1 | protein-disulfide reductase DsbD | - |
| HGO23_RS02495 (HGO23_02495) | 582773..583345 | + | 573 | WP_099137332.1 | transcriptional regulator | - |
| HGO23_RS02505 (HGO23_02505) | 583897..584925 | - | 1029 | WP_209028680.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HGO23_RS02510 (HGO23_02510) | 585053..586036 | - | 984 | WP_209027863.1 | TraI domain-containing protein | - |
| HGO23_RS02515 (HGO23_02515) | 586200..586883 | - | 684 | WP_209027864.1 | N-6 DNA methylase | - |
| HGO23_RS02520 (HGO23_02520) | 586986..587909 | - | 924 | WP_209027865.1 | DUF1281 domain-containing protein | - |
| HGO23_RS02525 (HGO23_02525) | 588001..588297 | - | 297 | WP_010846350.1 | TA system toxin CbtA family protein | - |
| HGO23_RS02530 (HGO23_02530) | 588313..588843 | - | 531 | WP_010846351.1 | hypothetical protein | - |
| HGO23_RS02535 (HGO23_02535) | 588965..589426 | - | 462 | WP_010846352.1 | antirestriction protein | - |
| HGO23_RS19515 (HGO23_02540) | 589416..589763 | - | 348 | WP_280529535.1 | antirestriction protein | - |
| HGO23_RS19520 | 590850..591005 | + | 156 | WP_038189488.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HGO23_RS02550 (HGO23_02550) | 591190..591594 | + | 405 | WP_038189491.1 | DUF6088 family protein | Antitoxin Detail |
| HGO23_RS02555 (HGO23_02555) | 591597..592541 | + | 945 | WP_209027867.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| HGO23_RS02560 (HGO23_02560) | 592550..595144 | + | 2595 | WP_038189494.1 | type I restriction-modification system subunit M | - |
| HGO23_RS02565 (HGO23_02565) | 595137..596411 | + | 1275 | WP_209027868.1 | restriction endonuclease subunit S | - |
| HGO23_RS02570 (HGO23_02570) | 596542..599661 | + | 3120 | WP_209027869.1 | HsdR family type I site-specific deoxyribonuclease | - |
| HGO23_RS02575 (HGO23_02575) | 599908..600825 | - | 918 | WP_209027870.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HGO23_RS02580 (HGO23_02580) | 601856..602227 | - | 372 | WP_209027871.1 | hypothetical protein | - |
| HGO23_RS02585 (HGO23_02585) | 602495..603076 | + | 582 | WP_209027872.1 | hypothetical protein | - |
| HGO23_RS02590 (HGO23_02590) | 603386..603775 | - | 390 | WP_209027873.1 | SMI1/KNR4 family protein | - |
| HGO23_RS02595 (HGO23_02595) | 603982..604278 | + | 297 | WP_209027874.1 | IS66 family transposase ISSba7 | Transposase |
| HGO23_RS02600 (HGO23_02600) | 604320..604616 | + | 297 | WP_244967867.1 | IS66 family transposase ISVme1 | Transposase |
| HGO23_RS02605 (HGO23_02605) | 604698..606153 | + | 1456 | Protein_511 | IS66 family transposase ISVme1 | Transposase |
| HGO23_RS19525 | 606176..607018 | - | 843 | WP_244967936.1 | hypothetical protein | - |
| HGO23_RS02615 (HGO23_02615) | 607169..607522 | - | 354 | WP_209027876.1 | hypothetical protein | - |
| HGO23_RS02620 (HGO23_02620) | 607497..607649 | - | 153 | WP_209027877.1 | hypothetical protein | - |
| HGO23_RS02625 (HGO23_02625) | 607753..608652 | - | 900 | WP_209027878.1 | IS982 family transposase ISNsp1 | Transposase |
| HGO23_RS02630 (HGO23_02630) | 608751..609023 | - | 273 | WP_209027879.1 | TNT domain-containing protein | - |
| HGO23_RS02635 (HGO23_02635) | 609606..609851 | - | 246 | WP_209027880.1 | hypothetical protein | - |
| HGO23_RS02640 (HGO23_02640) | 609867..623606 | - | 13740 | WP_209027881.1 | hemagglutinin repeat-containing protein | - |
| HGO23_RS02645 (HGO23_02645) | 623603..624142 | - | 540 | WP_209027882.1 | Leukotoxin-activating lysine-acyltransferase LtxC | VF |
| HGO23_RS02650 (HGO23_02650) | 624153..625850 | - | 1698 | WP_209027883.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| HGO23_RS02655 (HGO23_02655) | 626019..626156 | - | 138 | WP_209027884.1 | hypothetical protein | - |
| HGO23_RS02660 (HGO23_02660) | 626191..627705 | - | 1515 | WP_209027885.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HGO23_RS02665 (HGO23_02665) | 627702..628052 | - | 351 | WP_209027886.1 | hypothetical protein | - |
| HGO23_RS02670 (HGO23_02670) | 628061..629485 | - | 1425 | WP_244967937.1 | integrating conjugative element protein | - |
| HGO23_RS02675 (HGO23_02675) | 629539..630507 | - | 969 | WP_209027888.1 | TIGR03756 family integrating conjugative element protein | - |
| HGO23_RS02680 (HGO23_02680) | 630504..630905 | - | 402 | WP_209027889.1 | TIGR03757 family integrating conjugative element protein | - |
| HGO23_RS02685 (HGO23_02685) | 631788..632792 | - | 1005 | WP_209027890.1 | IS110 family transposase ISPlu13 | Transposase |
| HGO23_RS02690 (HGO23_02690) | 633206..634270 | - | 1065 | WP_244967868.1 | hypothetical protein | - |
| HGO23_RS19885 | 635557..635679 | + | 123 | WP_280529524.1 | hypothetical protein | - |
| HGO23_RS02710 (HGO23_02710) | 635698..639516 | - | 3819 | WP_244967869.1 | Invasin | VF |
| HGO23_RS02715 (HGO23_02715) | 639833..640357 | + | 525 | WP_099137209.1 | hypothetical protein | - |
| HGO23_RS02720 (HGO23_02720) | 640439..643198 | - | 2760 | WP_209027892.1 | conjugative transfer ATPase | - |
| HGO23_RS02725 (HGO23_02725) | 643198..643599 | - | 402 | WP_209027893.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| HGO23_RS02730 (HGO23_02730) | 643587..643943 | - | 357 | WP_047685858.1 | hypothetical protein | - |
| HGO23_RS02735 (HGO23_02735) | 643943..645355 | - | 1413 | WP_209027894.1 | TIGR03752 family integrating conjugative element protein | - |
| HGO23_RS02740 (HGO23_02740) | 645345..646178 | - | 834 | WP_209027895.1 | TIGR03749 family integrating conjugative element protein | - |
| HGO23_RS02745 (HGO23_02745) | 646175..646831 | - | 657 | WP_209027896.1 | TIGR03746 family integrating conjugative element protein | - |
| HGO23_RS02750 (HGO23_02750) | 646828..647184 | - | 357 | WP_209027897.1 | TIGR03750 family conjugal transfer protein | - |
| HGO23_RS02755 (HGO23_02755) | 647195..647527 | - | 333 | WP_244590010.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HGO23_RS02760 (HGO23_02760) | 647607..647843 | - | 237 | WP_209027899.1 | TIGR03758 family integrating conjugative element protein | - |
| HGO23_RS02765 (HGO23_02765) | 647840..648169 | - | 330 | WP_099137091.1 | RAQPRD family integrative conjugative element protein | - |
| HGO23_RS02770 (HGO23_02770) | 648319..649011 | + | 693 | WP_209027900.1 | DUF5710 domain-containing protein | - |
| HGO23_RS19530 | 649696..649833 | - | 138 | WP_244590009.1 | DUF4400 domain-containing protein | - |
| HGO23_RS02780 (HGO23_02780) | 650010..650336 | + | 327 | WP_010846393.1 | FxLYD domain-containing protein | - |
| HGO23_RS02785 (HGO23_02785) | 650428..651186 | - | 759 | WP_209027901.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| HGO23_RS02790 (HGO23_02790) | 651196..653259 | - | 2064 | WP_209027902.1 | type IV conjugative transfer system coupling protein TraD | - |
| HGO23_RS02795 (HGO23_02795) | 653268..653795 | - | 528 | WP_209027903.1 | integrating conjugative element protein | - |
| HGO23_RS02800 (HGO23_02800) | 653771..654472 | - | 702 | WP_209027904.1 | TIGR03759 family integrating conjugative element protein | - |
| HGO23_RS02805 (HGO23_02805) | 654472..655017 | - | 546 | WP_099137395.1 | hypothetical protein | VF |
| HGO23_RS02810 (HGO23_02810) | 655161..655448 | - | 288 | WP_099137394.1 | helix-turn-helix transcriptional regulator | - |
| HGO23_RS02815 (HGO23_02815) | 655877..656788 | - | 912 | WP_209027905.1 | Abi family protein | - |
| HGO23_RS02820 (HGO23_02820) | 657046..657558 | - | 513 | WP_209027906.1 | single-stranded DNA-binding protein | - |
| HGO23_RS02825 (HGO23_02825) | 657575..657784 | - | 210 | WP_209027907.1 | hypothetical protein | - |
| HGO23_RS02830 (HGO23_02830) | 657863..658327 | - | 465 | WP_187650411.1 | STY4534 family ICE replication protein | - |
| HGO23_RS02835 (HGO23_02835) | 658359..658604 | + | 246 | WP_145956665.1 | hypothetical protein | - |
| HGO23_RS02840 (HGO23_02840) | 658641..660647 | - | 2007 | WP_209027908.1 | DNA topoisomerase III | - |
| HGO23_RS02845 (HGO23_02845) | 660661..661374 | - | 714 | WP_099137388.1 | TIGR03761 family integrating conjugative element protein | - |
| HGO23_RS02850 (HGO23_02850) | 661417..661776 | - | 360 | WP_099137387.1 | hypothetical protein | - |
| HGO23_RS02855 (HGO23_02855) | 661760..662983 | - | 1224 | WP_209027909.1 | STY4528 family pathogenicity island replication protein | - |
| HGO23_RS02860 (HGO23_02860) | 663092..663346 | - | 255 | WP_209027910.1 | hypothetical protein | - |
| HGO23_RS02865 (HGO23_02865) | 663382..663957 | - | 576 | WP_209027911.1 | DUF2857 domain-containing protein | - |
| HGO23_RS02870 (HGO23_02870) | 664032..665624 | - | 1593 | WP_209027912.1 | ParB family protein | - |
| HGO23_RS02875 (HGO23_02875) | 665628..666992 | - | 1365 | WP_209027913.1 | SPI-7-type island replicative DNA helicase | - |
| HGO23_RS02880 (HGO23_02880) | 666976..667371 | - | 396 | WP_209027914.1 | hypothetical protein | - |
| HGO23_RS02885 (HGO23_02885) | 667368..668255 | - | 888 | WP_209027915.1 | Tyrosine-protein kinase YwqD | VF |
| HGO23_RS02890 (HGO23_02890) | 668542..669736 | + | 1195 | Protein_567 | Prophage integrase IntA ; Integrase | Integrase |
| HGO23_RS02895 (HGO23_02895) | 669876..670082 | + | 207 | WP_209027916.1 | AlpA family transcriptional regulator | - |
| HGO23_RS02900 (HGO23_02900) | 670295..672626 | + | 2332 | Protein_569 | phage/plasmid primase, P4 family | - |
| HGO23_RS02905 (HGO23_02905) | 673449..674678 | + | 1230 | WP_209027917.1 | 5-aminolevulinate synthase | - |
| HGO23_RS02910 (HGO23_02910) | 674759..675247 | + | 489 | WP_209027918.1 | GNAT family N-acetyltransferase | - |
| HGO23_RS02915 (HGO23_02915) | 675260..676327 | + | 1068 | WP_209027919.1 | hypothetical protein | - |
| HGO23_RS02920 (HGO23_02920) | 676343..677206 | - | 864 | WP_209027920.1 | HTH-type transcriptional regulator BenM | VF |
| HGO23_RS02925 (HGO23_02925) | 677522..678682 | + | 1161 | WP_209027921.1 | MFS transporter | - |
| HGO23_RS02930 (HGO23_02930) | 678948..679970 | + | 1023 | WP_209027922.1 | IS110 family transposase ISSde4 | Transposase |
| HGO23_RS19890 | 680695..680820 | + | 126 | WP_280529525.1 | hypothetical protein | - |
| HGO23_RS02935 (HGO23_02935) | 681483..681755 | + | 273 | WP_209027923.1 | helix-turn-helix transcriptional regulator | - |
| HGO23_RS02940 (HGO23_02940) | 682400..683407 | - | 1008 | WP_209027924.1 | site-specific integrase | - |
| HGO23_RS02945 (HGO23_02945) | 683493..684190 | + | 698 | WP_209028682.1 | IS1 family transposase | - |
| HGO23_RS02950 (HGO23_02950) | 684213..684749 | - | 537 | Protein_580 | IS110 family transposase | - |
| HGO23_RS02955 (HGO23_02955) | 685206..686540 | - | 1335 | Protein_581 | group II intron reverse transcriptase/maturase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|