MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 82460 bp
Accession: NZ_CP072455 Location: 1251617..1334076 Organism: Xenorhabdus budapestensis strain C-7-2 Replicon: chromosome
Accession: NZ_CP072455 Location: 1251617..1334076 Organism: Xenorhabdus budapestensis strain C-7-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGO23_RS05670 (HGO23_05670) | 1247517..1248710 | - | 1194 | WP_209028234.1 | MFS transporter | - |
| HGO23_RS05675 (HGO23_05675) | 1248843..1249751 | + | 909 | WP_209028235.1 | LysR family transcriptional regulator | - |
| HGO23_RS05680 (HGO23_05680) | 1249863..1250579 | - | 717 | WP_244967901.1 | SDR family oxidoreductase | - |
| HGO23_RS05685 (HGO23_05685) | 1250633..1251421 | - | 789 | WP_209028236.1 | SDR family oxidoreductase | - |
| HGO23_RS05690 (HGO23_05690) | 1251411..1252688 | - | 1278 | WP_209028237.1 | hypothetical protein | - |
| HGO23_RS05695 (HGO23_05695) | 1252693..1253424 | - | 732 | WP_209028238.1 | hypothetical protein | - |
| HGO23_RS05700 (HGO23_05700) | 1253509..1254558 | - | 1050 | Protein_1130 | UDP-N-acetylglucosamine 2-epimerase | VF |
| HGO23_RS05710 (HGO23_05710) | 1255156..1255269 | - | 114 | WP_244967902.1 | group II intron maturase-specific domain-containing protein | - |
| HGO23_RS05715 (HGO23_05715) | 1255287..1256279 | - | 993 | WP_209028241.1 | reverse transcriptase domain-containing protein | - |
| HGO23_RS05720 (HGO23_05720) | 1257122..1257328 | + | 207 | WP_209028242.1 | hypothetical protein | - |
| HGO23_RS05725 (HGO23_05725) | 1257306..1257725 | + | 420 | WP_244967903.1 | antirestriction protein | - |
| HGO23_RS05730 (HGO23_05730) | 1257715..1258176 | + | 462 | WP_209028244.1 | antirestriction protein | - |
| HGO23_RS05735 (HGO23_05735) | 1258298..1258828 | + | 531 | WP_209028245.1 | hypothetical protein | - |
| HGO23_RS05740 (HGO23_05740) | 1258844..1259140 | + | 297 | WP_209028246.1 | TA system toxin CbtA family protein | - |
| HGO23_RS05745 (HGO23_05745) | 1259232..1260155 | + | 924 | WP_209028247.1 | DUF1281 domain-containing protein | - |
| HGO23_RS05750 (HGO23_05750) | 1260258..1260941 | + | 684 | WP_209027864.1 | N-6 DNA methylase | - |
| HGO23_RS05755 (HGO23_05755) | 1261105..1261926 | + | 822 | WP_209028248.1 | TraI domain-containing protein | - |
| HGO23_RS05760 (HGO23_05760) | 1262006..1263029 | + | 1024 | Protein_1141 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HGO23_RS05765 (HGO23_05765) | 1263648..1263917 | - | 270 | WP_145956648.1 | helix-turn-helix transcriptional regulator | - |
| HGO23_RS05770 (HGO23_05770) | 1264418..1264630 | + | 213 | WP_209028249.1 | hypothetical protein | - |
| HGO23_RS05775 (HGO23_05775) | 1265170..1265763 | + | 594 | WP_209028250.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| HGO23_RS05780 (HGO23_05780) | 1265788..1266378 | - | 591 | WP_209028251.1 | GNAT family protein | - |
| HGO23_RS05785 (HGO23_05785) | 1266393..1267820 | - | 1428 | WP_209028252.1 | MFS transporter | - |
| HGO23_RS05790 (HGO23_05790) | 1267844..1268761 | - | 918 | WP_209028253.1 | FkbM family methyltransferase | - |
| HGO23_RS05795 (HGO23_05795) | 1268784..1269779 | - | 996 | WP_209028254.1 | HEXXH motif-containing putative peptide modification protein | - |
| HGO23_RS05800 (HGO23_05800) | 1271054..1272163 | + | 1110 | Protein_1149 | STY4528 family pathogenicity island replication protein | - |
| HGO23_RS05805 (HGO23_05805) | 1272356..1273068 | + | 713 | WP_209027487.1 | IS1 family transposase IS1N | Transposase |
| HGO23_RS05810 (HGO23_05810) | 1273065..1274135 | + | 1071 | WP_209028256.1 | AIPR family protein | - |
| HGO23_RS05815 (HGO23_05815) | 1274317..1274970 | - | 654 | WP_209028257.1 | DUF4276 family protein | - |
| HGO23_RS05820 (HGO23_05820) | 1274967..1276058 | - | 1092 | WP_209028258.1 | AAA family ATPase | - |
| HGO23_RS05825 (HGO23_05825) | 1276511..1276846 | + | 336 | WP_209028259.1 | helix-turn-helix transcriptional regulator | - |
| HGO23_RS05830 (HGO23_05830) | 1277021..1277566 | + | 546 | WP_209028260.1 | hypothetical protein | VF |
| HGO23_RS05835 (HGO23_05835) | 1277566..1278267 | + | 702 | WP_209028261.1 | TIGR03759 family integrating conjugative element protein | - |
| HGO23_RS05840 (HGO23_05840) | 1278243..1278728 | + | 486 | WP_209028262.1 | integrating conjugative element protein | - |
| HGO23_RS05845 (HGO23_05845) | 1278779..1280637 | + | 1859 | Protein_1158 | type IV conjugative transfer system coupling protein TraD | - |
| HGO23_RS05850 (HGO23_05850) | 1280647..1281372 | + | 726 | WP_209028263.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| HGO23_RS05855 (HGO23_05855) | 1281628..1282341 | - | 714 | WP_209028264.1 | hypothetical protein | - |
| HGO23_RS05860 (HGO23_05860) | 1282631..1282984 | + | 354 | WP_209028265.1 | RAQPRD family integrative conjugative element protein | - |
| HGO23_RS05865 (HGO23_05865) | 1282935..1283192 | + | 258 | WP_209028713.1 | TIGR03758 family integrating conjugative element protein | - |
| HGO23_RS05870 (HGO23_05870) | 1283228..1283605 | + | 378 | WP_209028266.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HGO23_RS05875 (HGO23_05875) | 1283615..1283968 | + | 354 | WP_209028267.1 | TIGR03750 family conjugal transfer protein | - |
| HGO23_RS05880 (HGO23_05880) | 1283968..1284613 | + | 646 | Protein_1165 | TIGR03746 family integrating conjugative element protein | - |
| HGO23_RS05885 (HGO23_05885) | 1284610..1285443 | + | 834 | WP_209028268.1 | TIGR03749 family integrating conjugative element protein | - |
| HGO23_RS05890 (HGO23_05890) | 1285433..1286809 | + | 1377 | WP_209028269.1 | TIGR03752 family integrating conjugative element protein | - |
| HGO23_RS05895 (HGO23_05895) | 1286846..1287202 | + | 357 | WP_209028270.1 | hypothetical protein | - |
| HGO23_RS05900 (HGO23_05900) | 1287190..1287591 | + | 402 | WP_209028271.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| HGO23_RS05905 (HGO23_05905) | 1287591..1287920 | + | 330 | Protein_1170 | TraC family protein | - |
| HGO23_RS05915 (HGO23_05915) | 1289169..1290212 | + | 1044 | Protein_1172 | hypothetical protein | - |
| HGO23_RS05920 (HGO23_05920) | 1290345..1290518 | + | 174 | WP_038186411.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| HGO23_RS05925 (HGO23_05925) | 1290573..1290989 | + | 417 | WP_209028274.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| HGO23_RS05930 (HGO23_05930) | 1291644..1292150 | - | 507 | WP_209028275.1 | zinc-ribbon domain-containing protein | - |
| HGO23_RS05940 (HGO23_05940) | 1292721..1293203 | - | 483 | WP_099137227.1 | SsrA-binding protein SmpB | - |
| HGO23_RS05945 (HGO23_05945) | 1293360..1293794 | + | 435 | WP_099137228.1 | type II toxin-antitoxin system RatA family toxin | - |
| HGO23_RS05950 (HGO23_05950) | 1293787..1294080 | + | 294 | WP_099137229.1 | RnfH family protein | - |
| HGO23_RS05955 (HGO23_05955) | 1294141..1294485 | - | 345 | WP_209028276.1 | outer membrane protein assembly factor BamE | - |
| HGO23_RS05960 (HGO23_05960) | 1294687..1296360 | - | 1674 | WP_209028277.1 | DNA repair protein RecN | VF |
| HGO23_RS05965 (HGO23_05965) | 1296511..1297389 | - | 879 | WP_209028714.1 | NAD(+) kinase | - |
| HGO23_RS05970 (HGO23_05970) | 1297514..1298095 | + | 582 | WP_209028278.1 | nucleotide exchange factor GrpE | - |
| HGO23_RS05975 (HGO23_05975) | 1298160..1298840 | - | 681 | WP_099137234.1 | uracil-DNA glycosylase | - |
| HGO23_RS05980 (HGO23_05980) | 1299190..1300392 | + | 1203 | WP_209028279.1 | phospholipase | - |
| HGO23_RS05985 (HGO23_05985) | 1300474..1301814 | - | 1341 | WP_209028715.1 | ATP-dependent RNA helicase SrmB | - |
| HGO23_RS05990 (HGO23_05990) | 1302046..1303140 | + | 1095 | WP_209028280.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HGO23_RS05995 (HGO23_05995) | 1304218..1305249 | + | 1032 | WP_209028281.1 | hypothetical protein | - |
| HGO23_RS06000 (HGO23_06000) | 1305298..1305747 | - | 450 | WP_244967904.1 | tail fiber assembly protein | - |
| HGO23_RS06005 (HGO23_06005) | 1305750..1306931 | - | 1182 | WP_244967905.1 | phage tail protein | - |
| HGO23_RS06010 (HGO23_06010) | 1306939..1307589 | - | 651 | WP_209028283.1 | DUF2612 domain-containing protein | - |
| HGO23_RS06015 (HGO23_06015) | 1307586..1308773 | - | 1188 | WP_209028284.1 | baseplate J/gp47 family protein | - |
| HGO23_RS06020 (HGO23_06020) | 1308777..1309124 | - | 348 | WP_209028285.1 | hypothetical protein | - |
| HGO23_RS06025 (HGO23_06025) | 1309124..1309879 | - | 756 | WP_209028286.1 | Gp138 family membrane-puncturing spike protein | - |
| HGO23_RS06030 (HGO23_06030) | 1309876..1310826 | - | 951 | WP_209028287.1 | hypothetical protein | - |
| HGO23_RS06035 (HGO23_06035) | 1310941..1311384 | - | 444 | WP_209028288.1 | hypothetical protein | - |
| HGO23_RS06040 (HGO23_06040) | 1311399..1311701 | - | 303 | WP_209028289.1 | hypothetical protein | - |
| HGO23_RS06045 (HGO23_06045) | 1311698..1312339 | - | 642 | WP_209028290.1 | hypothetical protein | - |
| HGO23_RS06050 (HGO23_06050) | 1312339..1314555 | - | 2217 | WP_209028291.1 | lytic transglycosylase catalytic | - |
| HGO23_RS06055 (HGO23_06055) | 1314542..1314691 | - | 150 | WP_209028292.1 | hypothetical protein | - |
| HGO23_RS06060 (HGO23_06060) | 1314721..1315170 | - | 450 | WP_209028293.1 | hypothetical protein | - |
| HGO23_RS06065 (HGO23_06065) | 1315183..1315626 | - | 444 | WP_209028294.1 | DUF3277 family protein | - |
| HGO23_RS06070 (HGO23_06070) | 1315633..1317099 | - | 1467 | WP_209028295.1 | DUF3383 domain-containing protein | - |
| HGO23_RS06075 (HGO23_06075) | 1317104..1317664 | - | 561 | WP_209028296.1 | hypothetical protein | - |
| HGO23_RS06080 (HGO23_06080) | 1317642..1318028 | - | 387 | WP_209028297.1 | head-tail adaptor | - |
| HGO23_RS06085 (HGO23_06085) | 1318028..1318540 | - | 513 | WP_209028717.1 | hypothetical protein | - |
| HGO23_RS06090 (HGO23_06090) | 1318531..1318941 | - | 411 | WP_209028298.1 | DUF4054 domain-containing protein | - |
| HGO23_RS06095 (HGO23_06095) | 1318910..1319152 | - | 243 | WP_209028299.1 | hypothetical protein | - |
| HGO23_RS06100 (HGO23_06100) | 1319156..1320103 | - | 948 | WP_209028300.1 | DUF2184 domain-containing protein | - |
| HGO23_RS06105 (HGO23_06105) | 1320112..1320612 | - | 501 | WP_209028301.1 | hypothetical protein | - |
| HGO23_RS06110 (HGO23_06110) | 1320626..1321876 | - | 1251 | WP_209028302.1 | DUF2213 domain-containing protein | - |
| HGO23_RS06115 (HGO23_06115) | 1321923..1322126 | - | 204 | WP_209028303.1 | hypothetical protein | - |
| HGO23_RS06120 (HGO23_06120) | 1322129..1322662 | - | 534 | WP_209028718.1 | phage minor head protein | - |
| HGO23_RS06125 (HGO23_06125) | 1322733..1324202 | - | 1470 | WP_209028304.1 | DUF1073 domain-containing protein | - |
| HGO23_RS06130 (HGO23_06130) | 1324425..1325951 | - | 1527 | WP_209028305.1 | phage terminase large subunit | - |
| HGO23_RS06135 (HGO23_06135) | 1325905..1326567 | - | 663 | WP_209028306.1 | terminase small subunit | - |
| HGO23_RS06140 (HGO23_06140) | 1326774..1327121 | - | 348 | WP_209028307.1 | hypothetical protein | - |
| HGO23_RS06145 (HGO23_06145) | 1327121..1327291 | - | 171 | WP_209028308.1 | hypothetical protein | - |
| HGO23_RS06150 (HGO23_06150) | 1327537..1327914 | - | 378 | WP_209028309.1 | hypothetical protein | - |
| HGO23_RS06155 (HGO23_06155) | 1327955..1328614 | - | 660 | WP_209026919.1 | hypothetical protein | - |
| HGO23_RS06160 (HGO23_06160) | 1328697..1329002 | + | 306 | WP_209028310.1 | hypothetical protein | - |
| HGO23_RS06165 (HGO23_06165) | 1329007..1329255 | - | 249 | WP_209028311.1 | hypothetical protein | - |
| HGO23_RS06170 (HGO23_06170) | 1329323..1329538 | - | 216 | WP_209026916.1 | hypothetical protein | - |
| HGO23_RS06175 (HGO23_06175) | 1329535..1330119 | - | 585 | WP_209028312.1 | BRO family protein | - |
| HGO23_RS06180 (HGO23_06180) | 1330430..1330714 | + | 285 | WP_209028313.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | - |
| HGO23_RS06185 (HGO23_06185) | 1330711..1330920 | - | 210 | WP_209026913.1 | hypothetical protein | - |
| HGO23_RS06190 (HGO23_06190) | 1330973..1331302 | - | 330 | WP_209028314.1 | hypothetical protein | - |
| HGO23_RS06195 (HGO23_06195) | 1331299..1331760 | - | 462 | WP_209028315.1 | lysis protein | - |
| HGO23_RS06200 (HGO23_06200) | 1331757..1332167 | - | 411 | WP_209028316.1 | structural protein | - |
| HGO23_RS06205 (HGO23_06205) | 1332164..1332487 | - | 324 | WP_244590026.1 | phage holin, lambda family | - |
| HGO23_RS06210 (HGO23_06210) | 1332532..1333830 | - | 1299 | WP_209028317.1 | site-specific DNA-methyltransferase | - |
| HGO23_RS06220 (HGO23_06220) | 1334418..1334813 | - | 396 | WP_209028318.1 | antiterminator Q family protein | - |
| HGO23_RS06225 (HGO23_06225) | 1334813..1335790 | - | 978 | WP_244967906.1 | toprim domain-containing protein | - |
| HGO23_RS06230 (HGO23_06230) | 1335787..1337406 | - | 1620 | WP_209028319.1 | DEAD/DEAH box helicase | - |
| HGO23_RS06235 (HGO23_06235) | 1337400..1337564 | - | 165 | WP_209028320.1 | hypothetical protein | - |
| HGO23_RS06240 (HGO23_06240) | 1337631..1338005 | - | 375 | WP_209028321.1 | hypothetical protein | - |
| HGO23_RS06245 (HGO23_06245) | 1338256..1338540 | - | 285 | WP_209028322.1 | hypothetical protein | - |
| HGO23_RS06250 (HGO23_06250) | 1338549..1338764 | - | 216 | WP_099137276.1 | helix-turn-helix transcriptional regulator | - |
| HGO23_RS19905 | 1338899..1339015 | + | 117 | Protein_1238 | helix-turn-helix transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|