MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 72754 bp
Accession: NZ_CP072393 Location: 4945609..5018362 Organism: Xanthomonas phaseoli pv. phaseoli strain 6546R(delta)tal18H Replicon: chromosome
Accession: NZ_CP072393 Location: 4945609..5018362 Organism: Xanthomonas phaseoli pv. phaseoli strain 6546R(delta)tal18H Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6335_RS21295 (J6335_21295) | 4940758..4942104 | + | 1347 | WP_082321407.1 | PrgH/EprH family type III secretion apparatus protein | - |
| J6335_RS21300 (J6335_21300) | 4942101..4942406 | + | 306 | WP_080950357.1 | type III secretion system needle filament subunit SctF | - |
| J6335_RS21305 (J6335_21305) | 4942472..4942756 | + | 285 | WP_039571032.1 | type III secretion system inner rod subunit SctI | - |
| J6335_RS21310 (J6335_21310) | 4942763..4943644 | + | 882 | WP_127446628.1 | type III secretion inner membrane ring lipoprotein SctJ | - |
| J6335_RS21315 (J6335_21315) | 4943641..4944237 | + | 597 | WP_080949130.1 | hypothetical protein | - |
| J6335_RS21320 (J6335_21320) | 4944209..4944883 | + | 675 | WP_039571029.1 | hypothetical protein | - |
| J6335_RS21325 (J6335_21325) | 4944880..4945113 | + | 234 | WP_039571027.1 | hypothetical protein | - |
| J6335_RS21330 (J6335_21330) | 4945295..4945609 | + | 315 | WP_039571026.1 | DUF1153 domain-containing protein | - |
| J6335_RS21335 (J6335_21335) | 4945609..4946424 | + | 816 | WP_103412538.1 | IS3 family transposase ISKpn40 | Transposase |
| J6335_RS21340 (J6335_21340) | 4946533..4946754 | + | 222 | WP_127446629.1 | hypothetical protein | - |
| J6335_RS21350 (J6335_21350) | 4949460..4949720 | + | 261 | WP_039575117.1 | hypothetical protein | - |
| J6335_RS21355 (J6335_21355) | 4949710..4950789 | + | 1080 | WP_103412539.1 | hypothetical protein ; Integrase | Integrase |
| J6335_RS21360 (J6335_21360) | 4950854..4951941 | + | 1088 | WP_099770635.1 | IS3 family transposase ISXac2 | Transposase |
| J6335_RS21365 (J6335_21365) | 4952352..4953371 | + | 1020 | WP_236493843.1 | hypothetical protein | - |
| J6335_RS21370 (J6335_21370) | 4953694..4954080 | - | 387 | WP_229006711.1 | hypothetical protein | - |
| J6335_RS21375 (J6335_21375) | 4954517..4954924 | + | 408 | WP_127446631.1 | hypothetical protein | - |
| J6335_RS21380 (J6335_21380) | 4954883..4956418 | - | 1536 | WP_080948716.1 | MASE1 domain-containing protein | - |
| J6335_RS21385 (J6335_21385) | 4956793..4957533 | + | 741 | WP_150115861.1 | hypothetical protein | - |
| J6335_RS21390 (J6335_21390) | 4957553..4958005 | + | 453 | WP_039575123.1 | HD domain-containing protein | - |
| J6335_RS22700 | 4958483..4959052 | - | 570 | WP_074052307.1 | hypothetical protein | - |
| J6335_RS22705 | 4959069..4959557 | - | 489 | WP_046735948.1 | DUF6283 family protein | - |
| J6335_RS21400 (J6335_21400) | 4960087..4960824 | - | 738 | WP_039574675.1 | hypothetical protein | - |
| J6335_RS21405 (J6335_21405) | 4960829..4961851 | - | 1023 | WP_127447083.1 | conjugal transfer protein TraN | - |
| J6335_RS21410 (J6335_21410) | 4961991..4962974 | + | 984 | WP_022557821.1 | IS5 family transposase ISXfu1 | Transposase |
| J6335_RS21415 (J6335_21415) | 4963078..4963842 | - | 765 | WP_127446633.1 | hypothetical protein | - |
| J6335_RS21420 (J6335_21420) | 4963859..4965016 | - | 1158 | WP_074052150.1 | TraU family protein | - |
| J6335_RS21425 (J6335_21425) | 4965013..4966290 | - | 1278 | WP_157926377.1 | TrbC family F-type conjugative pilus assembly protein | - |
| J6335_RS21430 (J6335_21430) | 4966326..4966847 | - | 522 | WP_127446636.1 | S26 family signal peptidase | - |
| J6335_RS21435 (J6335_21435) | 4966844..4967080 | - | 237 | WP_046736092.1 | hypothetical protein | - |
| J6335_RS22710 | 4967118..4967267 | + | 150 | Protein_4222 | IS3 family transposase ISXac3 | Transposase |
| J6335_RS21440 (J6335_21440) | 4967240..4968262 | + | 1023 | WP_236493351.1 | IS3 family transposase ISXac3 | Transposase |
| J6335_RS21445 (J6335_21445) | 4968547..4969634 | + | 1088 | WP_087944778.1 | IS3 family transposase ISXac2 | Transposase |
| J6335_RS21450 (J6335_21450) | 4969631..4972024 | - | 2394 | WP_103412540.1 | type IV secretion system protein TraC | - |
| J6335_RS21455 (J6335_21455) | 4972043..4972411 | - | 369 | WP_039575799.1 | TraA family conjugative transfer protein | - |
| J6335_RS21460 (J6335_21460) | 4972430..4973119 | - | 690 | WP_127446637.1 | TraV family lipoprotein | - |
| J6335_RS21465 (J6335_21465) | 4973192..4974364 | - | 1173 | WP_052756682.1 | TraB/VirB10 family protein | - |
| J6335_RS21470 (J6335_21470) | 4974416..4975503 | + | 1088 | WP_099770635.1 | IS3 family transposase ISXac2 | Transposase |
| J6335_RS21475 (J6335_21475) | 4975542..4975784 | + | 243 | Protein_4230 | restriction endonuclease | - |
| J6335_RS21485 (J6335_21485) | 4976965..4977258 | - | 294 | WP_143707755.1 | hypothetical protein | - |
| J6335_RS21490 (J6335_21490) | 4977282..4977593 | - | 312 | WP_052756667.1 | hypothetical protein | - |
| J6335_RS21495 (J6335_21495) | 4977586..4978191 | - | 606 | WP_127447084.1 | hypothetical protein | - |
| J6335_RS21500 (J6335_21500) | 4978375..4978566 | - | 192 | WP_080948735.1 | hypothetical protein | - |
| J6335_RS21505 (J6335_21505) | 4978985..4982632 | - | 3648 | WP_039574563.1 | urea carboxylase | - |
| J6335_RS21510 (J6335_21510) | 4982716..4984515 | - | 1800 | WP_039574561.1 | allophanate hydrolase | - |
| J6335_RS21515 (J6335_21515) | 4984865..4985341 | - | 477 | WP_039574558.1 | nuclear transport factor 2 family protein | - |
| J6335_RS21520 (J6335_21520) | 4985405..4985974 | - | 570 | WP_039574571.1 | TetR family transcriptional regulator | - |
| J6335_RS21525 (J6335_21525) | 4986091..4986663 | - | 573 | WP_017158948.1 | TetR/AcrR family transcriptional regulator | - |
| J6335_RS21530 (J6335_21530) | 4986748..4987491 | + | 744 | WP_039574556.1 | Glucose 1-dehydrogenase | VF |
| J6335_RS21535 (J6335_21535) | 4987857..4988375 | - | 519 | WP_039574553.1 | hypothetical protein | - |
| J6335_RS21545 (J6335_21545) | 4988803..4989153 | - | 351 | WP_236493384.1 | hypothetical protein | - |
| J6335_RS21550 (J6335_21550) | 4989368..4989700 | + | 333 | WP_003482333.1 | hypothetical protein | - |
| J6335_RS21560 (J6335_21560) | 4990015..4991940 | + | 1926 | WP_039574551.1 | M61 family metallopeptidase | - |
| J6335_RS21565 (J6335_21565) | 4992008..4992187 | + | 180 | WP_039574549.1 | hypothetical protein | - |
| J6335_RS21570 (J6335_21570) | 4992290..4993678 | - | 1389 | WP_039574546.1 | type III secretion system effector XopQ | - |
| J6335_RS21575 (J6335_21575) | 4994033..4994323 | - | 291 | WP_017156025.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| J6335_RS21580 (J6335_21580) | 4994341..4994454 | - | 114 | WP_017156024.1 | hypothetical protein | Toxin Detail |
| J6335_RS22715 | 4994451..4994624 | - | 174 | WP_201443182.1 | hypothetical protein | - |
| J6335_RS21585 (J6335_21585) | 4994719..4997226 | - | 2508 | WP_046834789.1 | AAA family ATPase | - |
| J6335_RS21590 (J6335_21590) | 4997414..5001400 | - | 3987 | WP_039569010.1 | exodeoxyribonuclease V subunit beta | - |
| J6335_RS21595 (J6335_21595) | 5001397..5004801 | - | 3405 | WP_039569011.1 | exodeoxyribonuclease V subunit gamma | - |
| J6335_RS21600 (J6335_21600) | 5005154..5009893 | - | 4740 | WP_039569012.1 | putative Ig domain-containing protein | - |
| J6335_RS21605 (J6335_21605) | 5010191..5010742 | + | 552 | WP_017165353.1 | tail fiber protein | - |
| J6335_RS21610 (J6335_21610) | 5010790..5011317 | + | 528 | WP_039569016.1 | tail fiber protein | - |
| J6335_RS21615 (J6335_21615) | 5011377..5011912 | + | 536 | Protein_4257 | tail fiber protein | - |
| J6335_RS21620 (J6335_21620) | 5011922..5012470 | + | 549 | WP_039569019.1 | hypothetical protein | VF |
| J6335_RS21625 (J6335_21625) | 5012489..5012776 | - | 288 | WP_017158959.1 | hypothetical protein | - |
| J6335_RS21630 (J6335_21630) | 5013158..5013952 | + | 795 | WP_017156015.1 | putative phospholipid import ATP-binding protein MlaF | VF |
| J6335_RS21635 (J6335_21635) | 5013952..5014701 | + | 750 | WP_011349188.1 | MlaE family lipid ABC transporter permease subunit | - |
| J6335_RS21640 (J6335_21640) | 5014713..5015258 | + | 546 | WP_005912377.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| J6335_RS21645 (J6335_21645) | 5015255..5015917 | + | 663 | WP_011349189.1 | ABC transporter substrate-binding protein | - |
| J6335_RS21650 (J6335_21650) | 5015907..5016197 | + | 291 | WP_039569023.1 | STAS domain-containing protein | - |
| J6335_RS21655 (J6335_21655) | 5016208..5017263 | + | 1056 | WP_039569025.1 | VacJ family lipoprotein | - |
| J6335_RS21665 (J6335_21665) | 5018619..5018786 | - | 168 | WP_157926379.1 | hypothetical protein | - |
| J6335_RS21670 (J6335_21670) | 5018817..5019362 | - | 546 | WP_039571216.1 | glutathione peroxidase | - |
| J6335_RS21675 (J6335_21675) | 5019516..5019893 | - | 378 | WP_039571219.1 | hypothetical protein | - |
| J6335_RS21680 (J6335_21680) | 5020109..5021641 | - | 1533 | WP_180301640.1 | DNA recombination protein RmuC | - |
| J6335_RS21685 (J6335_21685) | 5021870..5022877 | - | 1008 | WP_039571231.1 | zinc-binding alcohol dehydrogenase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|