MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 131494 bp
Accession: NZ_CP072168 Location: 82210..213703 Organism: Agrobacterium larrymoorei strain AF3.44 Replicon: chromosome
Accession: NZ_CP072168 Location: 82210..213703 Organism: Agrobacterium larrymoorei strain AF3.44 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5285_RS14570 (J5285_14570) | 78792..80195 | + | 1404 | WP_219275983.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| J5285_RS14575 (J5285_14575) | 80211..80978 | + | 768 | WP_219275985.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| J5285_RS14580 (J5285_14580) | 81086..81670 | - | 585 | WP_219275987.1 | plasmid pRiA4b ORF-3 family protein | - |
| J5285_RS14585 (J5285_14585) | 81670..83328 | - | 1659 | WP_136954363.1 | IS66 family transposase | - |
| J5285_RS14590 (J5285_14590) | 83407..83754 | - | 348 | WP_012478004.1 | IS66 family transposase ISAzs20 | Transposase |
| J5285_RS14595 (J5285_14595) | 83751..84092 | - | 342 | WP_136954364.1 | IS66 family transposase ISAzs20 | Transposase |
| J5285_RS14600 (J5285_14600) | 84369..85967 | + | 1599 | WP_219275990.1 | sulfatase-like hydrolase/transferase | - |
| J5285_RS14605 (J5285_14605) | 85964..87298 | + | 1335 | WP_219275992.1 | hypothetical protein | VF |
| J5285_RS14610 (J5285_14610) | 87536..88624 | + | 1089 | WP_219275994.1 | hypothetical protein | VF |
| J5285_RS14615 (J5285_14615) | 88700..89473 | + | 774 | WP_219275996.1 | Polysialic acid transport protein KpsM | VF |
| J5285_RS14620 (J5285_14620) | 89470..90135 | + | 666 | WP_219275999.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| J5285_RS14625 (J5285_14625) | 90132..91403 | + | 1272 | WP_219276001.1 | hypothetical protein | VF |
| J5285_RS14630 (J5285_14630) | 91406..92731 | + | 1326 | WP_219276003.1 | hypothetical protein | VF |
| J5285_RS14635 (J5285_14635) | 92848..93846 | + | 999 | WP_219276006.1 | UDP-N-acetylglucosamine 4,6-dehydratase (inverting) | VF |
| J5285_RS14640 (J5285_14640) | 93847..95010 | + | 1164 | WP_219276008.1 | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | VF |
| J5285_RS14645 (J5285_14645) | 95007..95696 | + | 690 | WP_219276010.1 | CMP-N,N'-diacetyllegionaminic acid synthase | VF |
| J5285_RS14650 (J5285_14650) | 95693..97261 | + | 1569 | WP_219276013.1 | UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase | VF |
| J5285_RS14655 (J5285_14655) | 97270..98313 | + | 1044 | WP_219276015.1 | Pseudaminic acid synthase | VF |
| J5285_RS14660 (J5285_14660) | 98424..101912 | + | 3489 | WP_219276017.1 | hypothetical protein | VF |
| J5285_RS14665 (J5285_14665) | 101995..102798 | + | 804 | WP_219276019.1 | class I SAM-dependent methyltransferase | - |
| J5285_RS14670 (J5285_14670) | 103009..103350 | + | 342 | WP_136954364.1 | IS66 family transposase ISAzs20 | Transposase |
| J5285_RS14675 (J5285_14675) | 103347..103694 | + | 348 | WP_012478004.1 | IS66 family transposase ISAzs20 | Transposase |
| J5285_RS14680 (J5285_14680) | 103773..105431 | + | 1659 | WP_136954363.1 | IS66 family transposase IS66 | Transposase |
| J5285_RS14685 (J5285_14685) | 105431..106015 | + | 585 | WP_136954362.1 | plasmid pRiA4b ORF-3 family protein | - |
| J5285_RS14690 (J5285_14690) | 106122..106781 | - | 660 | WP_219276021.1 | porin family protein | - |
| J5285_RS14695 (J5285_14695) | 107445..108629 | - | 1185 | WP_219276023.1 | IS3 family transposase ISRtr2 | Transposase |
| J5285_RS14700 (J5285_14700) | 108677..111976 | - | 3300 | WP_219276025.1 | Ti-type conjugative transfer relaxase TraA | - |
| J5285_RS14705 (J5285_14705) | 112221..112595 | + | 375 | WP_235695863.1 | mobilization protein | - |
| J5285_RS14710 (J5285_14710) | 112634..114280 | + | 1647 | WP_219276027.1 | type IV secretory system conjugative DNA transfer family protein | - |
| J5285_RS14715 (J5285_14715) | 115378..116061 | + | 684 | WP_219276029.1 | hypothetical protein | - |
| J5285_RS14720 (J5285_14720) | 116256..117380 | - | 1125 | Protein_92 | mandelate racemase/muconate lactonizing enzyme family protein | - |
| J5285_RS14725 (J5285_14725) | 117459..118958 | - | 1500 | WP_219276033.1 | tripartite tricarboxylate transporter permease | - |
| J5285_RS14730 (J5285_14730) | 118998..119477 | - | 480 | WP_219276035.1 | tripartite tricarboxylate transporter TctB family protein | - |
| J5285_RS14735 (J5285_14735) | 119537..120517 | - | 981 | WP_219276037.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| J5285_RS14740 (J5285_14740) | 120745..121773 | + | 1029 | WP_235695852.1 | LacI family DNA-binding transcriptional regulator | - |
| J5285_RS14745 (J5285_14745) | 122374..123372 | + | 999 | WP_219276039.1 | TylF/MycF/NovP-related O-methyltransferase | - |
| J5285_RS14750 (J5285_14750) | 123419..123967 | + | 549 | Protein_98 | DEAD/DEAH box helicase family protein | - |
| J5285_RS26160 | 125325..125495 | + | 171 | WP_235695853.1 | hypothetical protein | - |
| J5285_RS14765 (J5285_14765) | 125853..126182 | - | 330 | WP_219276041.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| J5285_RS14770 (J5285_14770) | 126338..126856 | + | 519 | WP_219276043.1 | PAS domain-containing protein | - |
| J5285_RS14775 (J5285_14775) | 126984..127415 | - | 432 | WP_235695854.1 | hypothetical protein | - |
| J5285_RS14780 (J5285_14780) | 127492..128673 | - | 1182 | WP_219276045.1 | hypothetical protein | VF |
| J5285_RS14785 (J5285_14785) | 128773..129399 | + | 627 | WP_219276046.1 | hypothetical protein | - |
| J5285_RS14790 (J5285_14790) | 129715..130314 | + | 600 | Protein_106 | ParB/Srx family N-terminal domain-containing protein | - |
| J5285_RS14795 (J5285_14795) | 130316..131257 | + | 942 | WP_219276048.1 | nucleotidyltransferase and HEPN domain-containing protein | - |
| J5285_RS14800 (J5285_14800) | 131474..132058 | + | 585 | WP_219276050.1 | cytochrome b/b6 domain-containing protein | - |
| J5285_RS14805 (J5285_14805) | 132171..132308 | + | 138 | WP_219276052.1 | hypothetical protein | - |
| J5285_RS14810 (J5285_14810) | 132597..132908 | + | 312 | WP_219276055.1 | hypothetical protein | - |
| J5285_RS14815 (J5285_14815) | 133042..133245 | - | 204 | WP_219276057.1 | cold-shock protein | - |
| J5285_RS14820 (J5285_14825) | 133891..134142 | - | 252 | WP_219276059.1 | hypothetical protein | - |
| J5285_RS14825 (J5285_14830) | 134422..134967 | - | 546 | WP_219276061.1 | hypothetical protein | - |
| J5285_RS14830 (J5285_14835) | 135099..137372 | + | 2274 | WP_027677262.1 | cation:proton antiporter | - |
| J5285_RS14835 (J5285_14840) | 137591..137854 | - | 264 | WP_027677263.1 | hypothetical protein | - |
| J5285_RS14840 (J5285_14845) | 137956..138744 | - | 789 | WP_027677264.1 | DUF429 domain-containing protein | - |
| J5285_RS14845 (J5285_14850) | 138761..139150 | - | 390 | WP_027677265.1 | Response regulator MprA | VF |
| J5285_RS14850 (J5285_14855) | 139324..139563 | + | 240 | WP_037171932.1 | hypothetical protein | - |
| J5285_RS14855 (J5285_14860) | 139591..140202 | - | 612 | WP_027677266.1 | HTH-type transcriptional regulator AcrR | VF |
| J5285_RS14860 (J5285_14865) | 140350..140613 | + | 264 | WP_219276063.1 | hypothetical protein | - |
| J5285_RS14865 (J5285_14870) | 141022..141549 | - | 528 | WP_219276065.1 | hypothetical protein | - |
| J5285_RS14870 (J5285_14875) | 141759..143324 | - | 1566 | WP_219276067.1 | YwqG family protein | - |
| J5285_RS14875 (J5285_14880) | 143631..144623 | - | 993 | WP_219276069.1 | DUF1963 domain-containing protein | - |
| J5285_RS14880 (J5285_14885) | 144907..145950 | + | 1044 | WP_219276071.1 | DUF1963 domain-containing protein | - |
| J5285_RS14885 (J5285_14890) | 146110..146466 | + | 357 | WP_219276210.1 | Rrf2 family transcriptional regulator | - |
| J5285_RS14890 (J5285_14895) | 146739..149006 | + | 2268 | Protein_126 | type VI secretion system tip protein TssI/VgrG | - |
| J5285_RS14895 (J5285_14900) | 149021..150136 | + | 1116 | WP_219276073.1 | DUF2169 domain-containing protein | - |
| J5285_RS14900 (J5285_14905) | 150133..151623 | + | 1491 | WP_219276075.1 | DUF4150 domain-containing protein | - |
| J5285_RS14905 (J5285_14910) | 151641..152780 | + | 1140 | WP_219276077.1 | hypothetical protein | - |
| J5285_RS14910 (J5285_14915) | 152828..153541 | + | 714 | WP_219276079.1 | hypothetical protein | - |
| J5285_RS14915 (J5285_14920) | 153593..154033 | + | 441 | WP_219276080.1 | hypothetical protein | - |
| J5285_RS14920 (J5285_14925) | 154353..154808 | + | 456 | WP_219276082.1 | hypothetical protein | - |
| J5285_RS14925 (J5285_14930) | 155105..156175 | + | 1071 | WP_219276084.1 | hypothetical protein | - |
| J5285_RS14930 (J5285_14935) | 156650..156818 | + | 169 | Protein_134 | IS5/IS1182 family transposase | - |
| J5285_RS14935 (J5285_14940) | 157000..158565 | - | 1566 | WP_136954438.1 | IS66 family transposase ISAtu6 | Transposase |
| J5285_RS14940 (J5285_14945) | 158638..158985 | - | 348 | WP_136954339.1 | IS66 family transposase ISRel19 | Transposase |
| J5285_RS14945 (J5285_14950) | 158982..159344 | - | 363 | WP_136954338.1 | IS66 family transposase ISAtu6 | Transposase |
| J5285_RS14950 (J5285_14955) | 159420..159776 | - | 357 | WP_219276086.1 | hypothetical protein | - |
| J5285_RS14955 (J5285_14960) | 160019..160693 | + | 675 | WP_219276088.1 | GAD-like domain-containing protein | - |
| J5285_RS14960 (J5285_14965) | 160716..161390 | + | 675 | WP_219276090.1 | GAD-like domain-containing protein | - |
| J5285_RS14965 (J5285_14970) | 161402..161707 | + | 306 | WP_219276092.1 | PAAR domain-containing protein | - |
| J5285_RS14970 (J5285_14975) | 162123..162320 | - | 198 | WP_219276094.1 | hypothetical protein | - |
| J5285_RS14975 (J5285_14980) | 162343..163340 | - | 998 | Protein_143 | IS3 family transposase IS1312 | Transposase |
| J5285_RS14980 (J5285_14985) | 163746..164959 | + | 1214 | WP_219276097.1 | IS3 family transposase IS426 | Transposase |
| J5285_RS14985 (J5285_14995) | 165122..165571 | + | 450 | WP_219276099.1 | hypothetical protein | - |
| J5285_RS14990 (J5285_15000) | 165564..166001 | + | 438 | WP_219276101.1 | tetratricopeptide repeat protein | - |
| J5285_RS14995 (J5285_15005) | 166155..166766 | + | 612 | WP_219276103.1 | suppressor of fused domain protein | - |
| J5285_RS26165 | 166916..167020 | + | 105 | Protein_148 | recombinase family protein | - |
| J5285_RS26170 | 167104..167247 | + | 144 | Protein_149 | IS66 family insertion sequence element accessory protein TnpB | - |
| J5285_RS15000 (J5285_15010) | 167619..168440 | - | 822 | WP_219276105.1 | DUF3800 domain-containing protein | - |
| J5285_RS15005 (J5285_15015) | 168631..168933 | + | 303 | Protein_151 | IS481 family transposase ISBxe3 | Transposase |
| J5285_RS15010 (J5285_15020) | 168926..169123 | - | 198 | Protein_152 | IS3 family transposase | - |
| J5285_RS15015 (J5285_15025) | 169398..169874 | + | 477 | WP_219276107.1 | hypothetical protein | - |
| J5285_RS15020 (J5285_15030) | 169884..170684 | + | 801 | WP_219276109.1 | hypothetical protein | - |
| J5285_RS15025 (J5285_15035) | 171088..171384 | + | 297 | WP_219276111.1 | PAAR domain-containing protein | - |
| J5285_RS15030 (J5285_15040) | 171604..172011 | + | 408 | WP_219276113.1 | hypothetical protein | - |
| J5285_RS15035 (J5285_15045) | 172141..172710 | + | 570 | WP_235695856.1 | hypothetical protein | - |
| J5285_RS15040 (J5285_15050) | 172856..173278 | - | 423 | WP_219276115.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| J5285_RS15045 (J5285_15055) | 173275..173544 | - | 270 | WP_219276117.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| J5285_RS15050 (J5285_15060) | 173814..174311 | - | 498 | WP_219276119.1 | RES family NAD+ phosphorylase | - |
| J5285_RS15055 (J5285_15065) | 174320..174670 | - | 351 | WP_136954379.1 | MbcA/ParS/Xre antitoxin family protein | - |
| J5285_RS15060 (J5285_15070) | 174903..175349 | - | 447 | WP_027677291.1 | hypothetical protein | - |
| J5285_RS15065 (J5285_15075) | 175693..176805 | + | 1113 | WP_027677292.1 | GSU2403 family nucleotidyltransferase fold protein | - |
| J5285_RS15070 (J5285_15080) | 177658..178023 | - | 366 | WP_027677293.1 | hypothetical protein | - |
| J5285_RS15075 (J5285_15085) | 178513..178956 | - | 444 | WP_027677294.1 | type II toxin-antitoxin system VapC family toxin | - |
| J5285_RS15080 (J5285_15090) | 178956..179195 | - | 240 | WP_027677295.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| J5285_RS15085 (J5285_15095) | 179663..180415 | + | 753 | WP_027677296.1 | phosphoglycerate mutase family protein | - |
| J5285_RS15090 (J5285_15100) | 180669..180992 | + | 324 | WP_027677297.1 | hypothetical protein | - |
| J5285_RS15095 (J5285_15105) | 181410..181637 | - | 228 | WP_136954378.1 | IS630 family transposase ISGdi4 | Transposase |
| J5285_RS15100 (J5285_15110) | 182360..182587 | + | 228 | WP_136954378.1 | IS630 family transposase ISGdi4 | Transposase |
| J5285_RS15105 (J5285_15115) | 183005..183328 | - | 324 | WP_027677297.1 | hypothetical protein | - |
| J5285_RS15110 (J5285_15120) | 183582..184334 | - | 753 | WP_027677296.1 | phosphoglycerate mutase family protein | - |
| J5285_RS15115 (J5285_15125) | 184802..185041 | + | 240 | WP_027677295.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| J5285_RS15120 (J5285_15130) | 185041..185484 | + | 444 | WP_027677294.1 | type II toxin-antitoxin system VapC family toxin | - |
| J5285_RS15125 (J5285_15135) | 185974..186339 | + | 366 | WP_027677293.1 | hypothetical protein | - |
| J5285_RS15130 (J5285_15140) | 187192..188304 | - | 1113 | WP_027677292.1 | GSU2403 family nucleotidyltransferase fold protein | - |
| J5285_RS15135 (J5285_15145) | 188648..189094 | + | 447 | WP_027677291.1 | hypothetical protein | - |
| J5285_RS15140 (J5285_15150) | 189327..189677 | + | 351 | WP_136954379.1 | MbcA/ParS/Xre antitoxin family protein | - |
| J5285_RS15145 (J5285_15155) | 189686..190183 | + | 498 | WP_027677321.1 | RES domain-containing protein | - |
| J5285_RS15150 (J5285_15160) | 190281..190583 | - | 303 | WP_084631872.1 | PAAR domain-containing protein | - |
| J5285_RS15155 (J5285_15165) | 190602..191393 | - | 792 | WP_136954380.1 | hypothetical protein | - |
| J5285_RS15160 (J5285_15170) | 191460..192302 | - | 843 | WP_037172001.1 | hypothetical protein | - |
| J5285_RS15165 (J5285_15175) | 192304..193266 | - | 963 | WP_027677324.1 | DUF4123 domain-containing protein | - |
| J5285_RS15170 (J5285_15180) | 193268..195721 | - | 2454 | WP_136954381.1 | type VI secretion system tip protein TssI/VgrG | - |
| J5285_RS15175 (J5285_15185) | 196277..197248 | + | 972 | WP_027677269.1 | 2-dehydropantoate 2-reductase N-terminal domain-containing protein | - |
| J5285_RS15180 (J5285_15190) | 197493..197930 | - | 438 | WP_027677268.1 | VOC family protein | - |
| J5285_RS15185 (J5285_15195) | 198529..198792 | - | 264 | WP_027677267.1 | hypothetical protein | - |
| J5285_RS15190 (J5285_15200) | 198940..199551 | + | 612 | WP_027677266.1 | HTH-type transcriptional regulator AcrR | VF |
| J5285_RS15195 (J5285_15205) | 199579..199818 | - | 240 | WP_037171932.1 | hypothetical protein | - |
| J5285_RS15200 (J5285_15210) | 199992..200381 | + | 390 | WP_027677265.1 | Response regulator MprA | VF |
| J5285_RS15205 (J5285_15215) | 200398..201186 | + | 789 | WP_027677264.1 | DUF429 domain-containing protein | - |
| J5285_RS15210 (J5285_15220) | 201288..201551 | + | 264 | WP_027677263.1 | hypothetical protein | - |
| J5285_RS15215 (J5285_15225) | 201770..204043 | - | 2274 | WP_027677262.1 | cation:proton antiporter | - |
| J5285_RS15220 (J5285_15230) | 204423..204722 | + | 300 | WP_027677261.1 | hypothetical protein | - |
| J5285_RS15225 (J5285_15235) | 204845..206515 | - | 1671 | WP_027677260.1 | IS66 family transposase ISRm14 | Transposase |
| J5285_RS15230 (J5285_15240) | 206578..206931 | - | 354 | WP_027677259.1 | IS66 family transposase ISRm14 | Transposase |
| J5285_RS15235 (J5285_15245) | 206928..207380 | - | 453 | WP_027677258.1 | IS66 family transposase ISRm14 | Transposase |
| J5285_RS15240 (J5285_15250) | 207428..208264 | - | 837 | WP_084631862.1 | Zinc-type alcohol dehydrogenase-like protein | VF |
| J5285_RS15245 (J5285_15255) | 208352..209116 | + | 765 | WP_136954382.1 | HTH-type transcriptional regulator NimR | VF |
| J5285_RS15250 (J5285_15260) | 209254..210450 | - | 1197 | WP_027677187.1 | FAD-dependent monooxygenase | - |
| J5285_RS15255 (J5285_15265) | 210508..210957 | - | 450 | WP_027677188.1 | MarR family transcriptional regulator | - |
| J5285_RS15260 (J5285_15270) | 211268..212407 | - | 1140 | WP_027677189.1 | mandelate racemase/muconate lactonizing enzyme family protein | - |
| J5285_RS15265 (J5285_15275) | 212421..213341 | - | 921 | WP_027677190.1 | dihydrodipicolinate synthase family protein | - |
| J5285_RS15270 (J5285_15280) | 213343..214053 | - | 711 | WP_051441440.1 | GntR family transcriptional regulator | - |
| J5285_RS15275 (J5285_15285) | 214171..215760 | + | 1590 | WP_027677192.1 | ABC transporter substrate-binding protein | - |
| J5285_RS15280 (J5285_15290) | 215785..216846 | + | 1062 | WP_037171879.1 | ABC transporter permease | - |
| J5285_RS15285 (J5285_15295) | 216846..217760 | + | 915 | WP_027677194.1 | ABC transporter permease | - |
| J5285_RS15290 (J5285_15300) | 217753..218601 | + | 849 | WP_027677195.1 | ABC transporter ATP-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|