MGE detailed information
MGE type: Prophage MGE length: 67393 bp
Accession: NZ_CP071405 Location: 614341..681733 Organism: Pantoea deleyi strain LMG24200 Replicon: chromosome
Accession: NZ_CP071405 Location: 614341..681733 Organism: Pantoea deleyi strain LMG24200 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J1C59_RS02940 | 609994..610605 | - | 612 | WP_242281355.1 | fimbria/pilus chaperone family protein | - |
| J1C59_RS02945 | 610736..611425 | - | 690 | WP_128085165.1 | DUF1120 domain-containing protein | - |
| J1C59_RS02950 | 612333..612590 | + | 258 | WP_128085164.1 | hypothetical protein | - |
| J1C59_RS02955 | 612730..613011 | + | 282 | WP_242281356.1 | hypothetical protein | - |
| J1C59_RS02960 | 613082..613537 | + | 456 | WP_128085163.1 | hypothetical protein | - |
| J1C59_RS02965 | 613534..613857 | + | 324 | WP_128085162.1 | DUF1493 family protein | - |
| J1C59_RS02970 | 614341..615369 | - | 1029 | WP_128085161.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| J1C59_RS02975 | 615369..615941 | - | 573 | WP_128085176.1 | phage repressor protein CI | - |
| J1C59_RS02980 | 616073..616336 | + | 264 | WP_128085160.1 | hypothetical protein | - |
| J1C59_RS02985 | 616367..616876 | + | 510 | WP_128085159.1 | phage regulatory CII family protein | - |
| J1C59_RS02990 | 616886..617068 | + | 183 | WP_128085158.1 | DUF2724 domain-containing protein | - |
| J1C59_RS02995 | 617133..617450 | + | 318 | WP_242281380.1 | hypothetical protein | - |
| J1C59_RS03000 | 617519..617746 | + | 228 | WP_128085156.1 | DUF2732 domain-containing protein | - |
| J1C59_RS03005 | 617746..617973 | + | 228 | WP_128085155.1 | TraR/DksA family transcriptional regulator | - |
| J1C59_RS03010 | 617970..618833 | + | 864 | WP_128085154.1 | DNA adenine methylase | - |
| J1C59_RS03015 | 618830..619834 | + | 1005 | WP_128085153.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| J1C59_RS03020 | 619831..622080 | + | 2250 | WP_208721882.1 | replication endonuclease | - |
| J1C59_RS03025 | 622281..622472 | + | 192 | WP_128085152.1 | hypothetical protein | - |
| J1C59_RS03030 | 622491..622724 | + | 234 | Protein_585 | DinI-like family protein | - |
| J1C59_RS03035 | 622799..623044 | + | 246 | WP_128085151.1 | hypothetical protein | - |
| J1C59_RS03040 | 623421..623675 | + | 255 | WP_128085149.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| J1C59_RS03045 | 623672..624013 | + | 342 | WP_128085148.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| J1C59_RS03050 | 624071..625690 | - | 1620 | WP_128085147.1 | hypothetical protein | - |
| J1C59_RS03055 | 625814..626854 | - | 1041 | WP_128085146.1 | phage portal protein | - |
| J1C59_RS03060 | 626854..628617 | - | 1764 | WP_128085145.1 | terminase ATPase subunit family protein | - |
| J1C59_RS03065 | 628762..629610 | + | 849 | WP_140916883.1 | GPO family capsid scaffolding protein | - |
| J1C59_RS03070 | 629663..630775 | + | 1113 | WP_128085144.1 | phage major capsid protein, P2 family | - |
| J1C59_RS03075 | 630779..631447 | + | 669 | WP_128085143.1 | terminase endonuclease subunit | - |
| J1C59_RS03080 | 631540..632010 | + | 471 | WP_128085142.1 | head completion/stabilization protein | - |
| J1C59_RS03085 | 632010..632213 | + | 204 | WP_128085141.1 | tail protein X | - |
| J1C59_RS03090 | 632216..632434 | + | 219 | WP_064704197.1 | HP1 family phage holin | - |
| J1C59_RS03095 | 632418..632927 | + | 510 | WP_128085140.1 | lysozyme | - |
| J1C59_RS03100 | 632924..633346 | + | 423 | WP_140916882.1 | Rz-like lysis system protein LysB | - |
| J1C59_RS03105 | 633243..633515 | + | 273 | WP_242281357.1 | Rz1-like lysis system protein LysC | - |
| J1C59_RS03110 | 633448..633915 | + | 468 | WP_128085139.1 | phage tail protein | - |
| J1C59_RS03115 | 633912..634361 | + | 450 | WP_128085138.1 | phage virion morphogenesis protein | - |
| J1C59_RS03120 | 634384..635034 | - | 651 | WP_128085137.1 | hypothetical protein | - |
| J1C59_RS03125 | 635148..635732 | + | 585 | WP_128085174.1 | phage baseplate assembly protein V | - |
| J1C59_RS03130 | 635729..636079 | + | 351 | WP_128085136.1 | GPW/gp25 family protein | - |
| J1C59_RS03135 | 636084..636992 | + | 909 | WP_128085135.1 | baseplate assembly protein | - |
| J1C59_RS03140 | 636985..637593 | + | 609 | WP_128085134.1 | phage tail protein I | - |
| J1C59_RS03145 | 637590..638648 | + | 1059 | WP_242281358.1 | phage tail protein | - |
| J1C59_RS03150 | 638648..639235 | + | 588 | WP_128086951.1 | tail fiber assembly protein | - |
| J1C59_RS03155 | 639531..639932 | - | 402 | WP_128086950.1 | tail fiber assembly protein | - |
| J1C59_RS03160 | 639933..640301 | - | 369 | WP_242281359.1 | hypothetical protein | - |
| J1C59_RS03165 | 640362..640940 | + | 579 | WP_128086083.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| J1C59_RS03170 | 641021..642190 | + | 1170 | WP_128086082.1 | phage tail sheath protein | - |
| J1C59_RS03175 | 642203..642712 | + | 510 | WP_128086081.1 | phage major tail tube protein | - |
| J1C59_RS03180 | 642771..643049 | + | 279 | WP_140917304.1 | phage tail assembly protein | - |
| J1C59_RS03185 | 643082..643207 | + | 126 | WP_128086079.1 | GpE family phage tail protein | - |
| J1C59_RS03190 | 643197..645659 | + | 2463 | WP_128086078.1 | phage tail tape measure protein | - |
| J1C59_RS03195 | 645663..646190 | + | 528 | WP_128086077.1 | phage tail protein | - |
| J1C59_RS03200 | 646187..647359 | + | 1173 | WP_128086076.1 | phage late control D family protein | - |
| J1C59_RS03205 | 647429..647647 | + | 219 | WP_128086075.1 | ogr/Delta-like zinc finger family protein | - |
| J1C59_RS03210 | 647699..648106 | - | 408 | WP_128086074.1 | hypothetical protein | - |
| J1C59_RS03220 | 648921..649433 | + | 513 | WP_128086073.1 | G/U mismatch-specific DNA glycosylase | - |
| J1C59_RS03225 | 649511..651352 | - | 1842 | WP_128086072.1 | RNA polymerase sigma factor RpoD | - |
| J1C59_RS03230 | 651730..653475 | - | 1746 | WP_128086071.1 | DNA primase | - |
| J1C59_RS03235 | 653594..653809 | - | 216 | WP_001144069.1 | 30S ribosomal protein S21 | - |
| J1C59_RS03240 | 654087..655100 | + | 1014 | WP_128086070.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| J1C59_RS03245 | 655313..655918 | - | 606 | WP_128086069.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| J1C59_RS03250 | 656027..656386 | + | 360 | WP_128086068.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| J1C59_RS03255 | 656578..657396 | + | 819 | WP_111139908.1 | undecaprenyl-diphosphate phosphatase | - |
| J1C59_RS03260 | 657413..658645 | - | 1233 | WP_140917303.1 | multifunctional CCA addition/repair protein | - |
| J1C59_RS03265 | 658803..659423 | - | 621 | WP_111139906.1 | TIGR04211 family SH3 domain-containing protein | - |
| J1C59_RS03270 | 659695..661005 | + | 1311 | WP_128085206.1 | inorganic triphosphatase | - |
| J1C59_RS03275 | 661040..663892 | + | 2853 | WP_140917302.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | - |
| J1C59_RS03280 | 663963..665387 | + | 1425 | WP_128085205.1 | Bifunctional protein HldE | VF |
| J1C59_RS03285 | 665430..665813 | - | 384 | WP_128085204.1 | accessory factor UbiK family protein | - |
| J1C59_RS03290 | 666253..666909 | + | 657 | WP_128085203.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| J1C59_RS03295 | 667133..667918 | + | 786 | WP_128085202.1 | 4,5-DOPA dioxygenase extradiol | - |
| J1C59_RS03300 | 668077..669237 | - | 1161 | WP_128085201.1 | glutathionylspermidine synthase family protein | - |
| J1C59_RS03305 | 669245..669916 | - | 672 | WP_128085200.1 | DUF1190 family protein | - |
| J1C59_RS03310 | 670059..671525 | - | 1467 | WP_128085199.1 | outer membrane channel protein TolC | - |
| J1C59_RS03315 | 671739..672374 | + | 636 | WP_128085208.1 | ADP-ribose diphosphatase | - |
| J1C59_RS03320 | 672371..672796 | + | 426 | WP_128085198.1 | DUF1249 family protein | - |
| J1C59_RS03325 | 672839..673666 | + | 828 | WP_128085197.1 | 3',5'-cyclic-AMP phosphodiesterase | - |
| J1C59_RS03330 | 673670..674251 | + | 582 | WP_128085196.1 | esterase YqiA | - |
| J1C59_RS03335 | 674301..676196 | + | 1896 | WP_128085195.1 | DNA topoisomerase IV subunit B | - |
| J1C59_RS03340 | 676305..677204 | + | 900 | WP_128085194.1 | HTH-type transcriptional regulator DmlR | VF |
| J1C59_RS03345 | 677409..677717 | - | 309 | WP_128085193.1 | putative quinol monooxygenase | - |
| J1C59_RS03350 | 677766..678347 | - | 582 | WP_128085192.1 | NAD(P)H-dependent oxidoreductase | - |
| J1C59_RS03355 | 678503..679267 | + | 765 | WP_242281360.1 | transporter substrate-binding domain-containing protein | - |
| J1C59_RS03360 | 679460..681733 | + | 2274 | WP_128085190.1 | DNA topoisomerase IV subunit A | - |
| J1C59_RS03365 | 681779..682516 | + | 738 | WP_128085189.1 | 1-acylglycerol-3-phosphate O-acyltransferase | - |
| J1C59_RS03370 | 682658..684088 | + | 1431 | WP_128085188.1 | cell division protein FtsP | - |
| J1C59_RS03375 | 684180..685004 | - | 825 | WP_128085187.1 | 2,5-didehydrogluconate reductase DkgA | - |
| J1C59_RS03380 | 685208..686116 | + | 909 | WP_128085186.1 | AraC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|