MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 45776 bp
Accession: NZ_CP071312 Location: 1171274..1217049 Organism: Rhizobium sp. X9 Replicon: chromosome
Accession: NZ_CP071312 Location: 1171274..1217049 Organism: Rhizobium sp. X9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JZY08_RS20250 | 1168909..1169346 | + | 438 | WP_216333389.1 | RT0821/Lpp0805 family surface protein | - |
| JZY08_RS20255 | 1169361..1170065 | + | 705 | WP_216333391.1 | serine protease | - |
| JZY08_RS20260 | 1170062..1170727 | + | 666 | WP_216333393.1 | hypothetical protein | - |
| JZY08_RS20265 | 1170825..1171163 | - | 339 | WP_216333395.1 | hypothetical protein | - |
| JZY08_RS20270 | 1171274..1172545 | - | 1272 | WP_253204159.1 | hypothetical protein ; Integrase | Integrase |
| JZY08_RS20275 | 1172791..1173957 | + | 1167 | WP_072495381.1 | IS110 family transposase ISRel9 | Transposase |
| JZY08_RS20280 | 1174090..1174995 | - | 906 | WP_246669768.1 | IS21 family transposase ISPkr1 | Transposase |
| JZY08_RS20285 | 1174937..1176496 | - | 1560 | Protein_1016 | IS21 family transposase ISMdi27 | Transposase |
| JZY08_RS20290 | 1176610..1176954 | - | 345 | Protein_1017 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| JZY08_RS20295 | 1176974..1177165 | - | 192 | WP_245293675.1 | hypothetical protein | - |
| JZY08_RS20300 | 1177458..1177763 | + | 306 | WP_075657396.1 | hypothetical protein | - |
| JZY08_RS20305 | 1177760..1178206 | + | 447 | WP_151562776.1 | type II toxin-antitoxin system VapC family toxin | - |
| JZY08_RS20310 | 1178203..1179594 | + | 1392 | WP_151562774.1 | SIR2 family protein | - |
| JZY08_RS20315 | 1179595..1181589 | + | 1995 | WP_151562772.1 | DUF87 domain-containing protein | - |
| JZY08_RS20320 | 1181836..1182798 | + | 963 | WP_216333398.1 | zincin-like metallopeptidase domain-containing protein | - |
| JZY08_RS20325 | 1182795..1183166 | + | 372 | WP_112585147.1 | DUF2958 domain-containing protein | - |
| JZY08_RS20330 | 1183166..1183906 | + | 741 | WP_216333401.1 | hypothetical protein | - |
| JZY08_RS20335 | 1183903..1184334 | + | 432 | WP_216333403.1 | hypothetical protein | - |
| JZY08_RS20340 | 1184321..1184662 | + | 342 | WP_112585153.1 | hypothetical protein | - |
| JZY08_RS20345 | 1184767..1186926 | + | 2160 | WP_112585155.1 | chromosome partitioning protein ParB | - |
| JZY08_RS20350 | 1187011..1187316 | + | 306 | Protein_1029 | hypothetical protein | - |
| JZY08_RS20355 | 1187692..1187856 | + | 165 | WP_216333405.1 | hypothetical protein | - |
| JZY08_RS20360 | 1188043..1188600 | + | 558 | WP_112585157.1 | hypothetical protein | - |
| JZY08_RS20365 | 1188664..1189080 | + | 417 | WP_112585159.1 | hypothetical protein | - |
| JZY08_RS20370 | 1189073..1189717 | + | 645 | Protein_1033 | antitoxin of toxin-antitoxin stability system | - |
| JZY08_RS20375 | 1189963..1194312 | + | 4350 | WP_112585161.1 | strawberry notch family protein | - |
| JZY08_RS20380 | 1194312..1195355 | + | 1044 | WP_112585163.1 | toprim domain-containing protein | - |
| JZY08_RS20385 | 1195682..1196617 | + | 936 | WP_112585934.1 | DUF2493 domain-containing protein | - |
| JZY08_RS20390 | 1196823..1197194 | + | 372 | WP_253204170.1 | hypothetical protein | - |
| JZY08_RS20395 | 1197886..1198287 | + | 402 | WP_112585165.1 | single-stranded DNA-binding protein | - |
| JZY08_RS20400 | 1198487..1198735 | + | 249 | WP_112585167.1 | hypothetical protein | - |
| JZY08_RS20405 | 1198835..1199116 | + | 282 | WP_112585169.1 | DUF2285 domain-containing protein | - |
| JZY08_RS27610 | 1199224..1199511 | + | 288 | WP_112585171.1 | DUF6499 domain-containing protein | - |
| JZY08_RS20410 | 1199489..1199995 | + | 507 | WP_112585173.1 | DUF2285 domain-containing protein | - |
| JZY08_RS20415 | 1200137..1200418 | + | 282 | WP_112585175.1 | helix-turn-helix domain-containing protein | - |
| JZY08_RS20420 | 1200437..1201609 | + | 1173 | WP_216331574.1 | replication initiator protein A | - |
| JZY08_RS20425 | 1201606..1202259 | + | 654 | WP_112585179.1 | Chromosome-partitioning ATPase Soj | VF |
| JZY08_RS20430 | 1202256..1203014 | + | 759 | WP_112585181.1 | site-specific DNA-methyltransferase | - |
| JZY08_RS20435 | 1203011..1203265 | + | 255 | WP_112585183.1 | hypothetical protein | - |
| JZY08_RS20440 | 1203262..1203780 | + | 519 | WP_097136836.1 | DUF2840 domain-containing protein | - |
| JZY08_RS20445 | 1203777..1204337 | + | 561 | WP_112585185.1 | S26 family signal peptidase | - |
| JZY08_RS20450 | 1204373..1204714 | + | 342 | WP_112585187.1 | DUF736 domain-containing protein | - |
| JZY08_RS20455 | 1204711..1205478 | + | 768 | WP_112585189.1 | lytic transglycosylase domain-containing protein | - |
| JZY08_RS20460 | 1205726..1207513 | + | 1788 | WP_112585936.1 | DUF3363 domain-containing protein | - |
| JZY08_RS20465 | 1207529..1209529 | + | 2001 | WP_112585191.1 | Conjugal transfer protein TraG | VF |
| JZY08_RS20470 | 1209539..1209964 | + | 426 | WP_112585193.1 | ribbon-helix-helix protein, CopG family | - |
| JZY08_RS20475 | 1210026..1210286 | + | 261 | WP_112585195.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| JZY08_RS20480 | 1210283..1210693 | + | 411 | WP_112585197.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| JZY08_RS20485 | 1210740..1211138 | - | 399 | WP_216331575.1 | hypothetical protein | - |
| JZY08_RS20490 | 1211135..1211785 | - | 651 | WP_112585201.1 | glutathione S-transferase family protein | - |
| JZY08_RS20495 | 1212141..1213139 | + | 999 | WP_009452107.1 | Type IV secretion system protein VirB11 | VF |
| JZY08_RS20500 | 1213136..1213465 | + | 330 | WP_009452106.1 | TrbC/VirB2 family protein | - |
| JZY08_RS20505 | 1213465..1213746 | + | 282 | WP_097136820.1 | VirB3 family type IV secretion system protein | - |
| JZY08_RS20510 | 1213757..1216276 | + | 2520 | WP_112585203.1 | conjugal transfer protein TrbE | - |
| JZY08_RS20515 | 1216273..1217049 | + | 777 | WP_112585205.1 | P-type conjugative transfer protein TrbJ | - |
| JZY08_RS20520 | 1217070..1217357 | + | 288 | WP_112585207.1 | putative entry exclusion protein TrbK-alt | - |
| JZY08_RS20525 | 1217361..1218719 | + | 1359 | WP_097136812.1 | P-type conjugative transfer protein TrbL | - |
| JZY08_RS20530 | 1218716..1219405 | + | 690 | WP_112585209.1 | conjugal transfer protein TrbF | - |
| JZY08_RS20535 | 1219402..1220424 | + | 1023 | WP_112585211.1 | P-type conjugative transfer protein TrbG | - |
| JZY08_RS20540 | 1220493..1221596 | + | 1104 | WP_112585938.1 | TrbI/VirB10 family protein | - |
| JZY08_RS20545 | 1221596..1221880 | + | 285 | WP_097136805.1 | DUF2274 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|