MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 117206 bp
Accession: NZ_CP071248 Location: 1597845..1715050 Organism: Bifidobacterium longum subsp. infantis strain JCM 7009 Replicon: chromosome
Accession: NZ_CP071248 Location: 1597845..1715050 Organism: Bifidobacterium longum subsp. infantis strain JCM 7009 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BLI009_RS06885 () | 1593940..1595565 | + | 1626 | WP_012577241.1 | ABC transporter substrate-binding protein | - |
| BLI009_RS06890 () | 1595776..1596870 | + | 1095 | WP_014484723.1 | ABC transporter permease | - |
| BLI009_RS06895 () | 1596872..1598053 | + | 1182 | WP_206648306.1 | ABC transporter permease subunit | - |
| BLI009_RS06900 () | 1598059..1599771 | + | 1713 | WP_206648307.1 | Glutathione import ATP-binding protein GsiA | VF |
| BLI009_RS06905 () | 1599965..1601083 | + | 1119 | WP_206648308.1 | substrate-binding domain-containing protein | - |
| BLI009_RS06910 () | 1601167..1602402 | - | 1236 | WP_206648309.1 | AGE family epimerase/isomerase | - |
| BLI009_RS06915 () | 1602469..1603767 | - | 1299 | WP_206648310.1 | glycoside hydrolase family 125 protein | - |
| BLI009_RS06920 () | 1603981..1604877 | - | 897 | WP_077389013.1 | carbohydrate kinase | - |
| BLI009_RS06925 () | 1604949..1606163 | - | 1215 | WP_012577249.1 | ROK family transcriptional regulator | - |
| BLI009_RS06930 () | 1606390..1607304 | + | 915 | WP_065436238.1 | ROK family protein | - |
| BLI009_RS06935 () | 1607445..1608569 | - | 1125 | WP_032745260.1 | ROK family protein | - |
| BLI009_RS06940 () | 1608907..1609719 | + | 813 | WP_206648311.1 | glucosamine-6-phosphate deaminase | - |
| BLI009_RS06945 () | 1609837..1611120 | + | 1284 | WP_206648312.1 | amidohydrolase family protein | - |
| BLI009_RS06950 () | 1611552..1612889 | + | 1338 | WP_012577254.1 | carbohydrate ABC transporter substrate-binding protein | - |
| BLI009_RS06955 () | 1613036..1613947 | + | 912 | WP_012577255.1 | sugar ABC transporter permease | - |
| BLI009_RS06960 () | 1613964..1614896 | + | 933 | WP_206648313.1 | ABC transporter permease subunit | - |
| BLI009_RS06965 () | 1614893..1615072 | + | 180 | WP_012577257.1 | hypothetical protein | - |
| BLI009_RS06970 () | 1615182..1615703 | - | 522 | WP_206648314.1 | NUDIX domain-containing protein | - |
| BLI009_RS06975 () | 1615700..1617289 | - | 1590 | WP_206648315.1 | aminopeptidase P N-terminal domain-containing protein | - |
| BLI009_RS06980 () | 1617593..1618444 | - | 852 | WP_165541019.1 | hypothetical protein | - |
| BLI009_RS06985 () | 1619698..1621287 | + | 1590 | WP_206648316.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| BLI009_RS06990 () | 1621341..1625018 | + | 3678 | WP_206648317.1 | chromosome segregation protein SMC | - |
| BLI009_RS06995 () | 1625137..1626132 | - | 996 | WP_206648318.1 | GNAT family N-acetyltransferase | - |
| BLI009_RS07000 () | 1626254..1627807 | - | 1554 | WP_206648319.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| BLI009_RS07005 () | 1627982..1628734 | + | 753 | WP_038425971.1 | sigma-70 family RNA polymerase sigma factor | - |
| BLI009_RS07010 () | 1628734..1629054 | + | 321 | WP_007055264.1 | hypothetical protein | - |
| BLI009_RS07015 () | 1629320..1630264 | - | 945 | WP_032745246.1 | aldose 1-epimerase family protein | - |
| BLI009_RS07020 () | 1630389..1631345 | - | 957 | WP_206648320.1 | aldose 1-epimerase family protein | - |
| BLI009_RS07025 () | 1631570..1632628 | + | 1059 | WP_206648321.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| BLI009_RS07030 () | 1632668..1633177 | - | 510 | WP_206648322.1 | Cys-tRNA(Pro) deacylase | - |
| BLI009_RS07035 () | 1633271..1634329 | - | 1059 | WP_013140925.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| BLI009_RS07040 () | 1634569..1635294 | - | 726 | WP_206648323.1 | thiamine diphosphokinase | - |
| BLI009_RS07045 () | 1635605..1636327 | + | 723 | WP_032682519.1 | translation initiation factor IF-3 | - |
| BLI009_RS07050 () | 1636308..1636502 | + | 195 | WP_007052593.1 | 50S ribosomal protein L35 | - |
| BLI009_RS07055 () | 1636555..1636938 | + | 384 | WP_206648324.1 | 50S ribosomal protein L20 | - |
| BLI009_RS07060 () | 1637009..1638142 | + | 1134 | WP_206648325.1 | glycerate kinase | - |
| BLI009_RS07065 () | 1638199..1639128 | + | 930 | WP_206648326.1 | IS91 family transposase ISWz1 | Transposase |
| BLI009_RS07070 () | 1639376..1640215 | + | 840 | WP_010080876.1 | hypothetical protein | VF |
| BLI009_RS07075 () | 1640234..1641148 | + | 915 | WP_206648327.1 | segregation/condensation protein A | - |
| BLI009_RS07080 () | 1641161..1641877 | + | 717 | WP_052792564.1 | SMC-Scp complex subunit ScpB | - |
| BLI009_RS07085 () | 1642009..1642836 | + | 828 | WP_012577276.1 | NUDIX hydrolase | - |
| BLI009_RS07090 () | 1642896..1644176 | + | 1281 | WP_206648328.1 | quinolinate synthase NadA | - |
| BLI009_RS07095 () | 1644266..1645897 | + | 1632 | WP_206648329.1 | L-aspartate oxidase | - |
| BLI009_RS07100 () | 1645901..1646794 | + | 894 | WP_206648330.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BLI009_RS07105 () | 1646797..1648044 | + | 1248 | WP_060620891.1 | cysteine desulfurase | - |
| BLI009_RS07110 () | 1648230..1650161 | + | 1932 | WP_206648331.1 | GTP-binding protein TypA/BipA | VF |
| BLI009_RS07115 () | 1650344..1651751 | - | 1408 | Protein_1372 | MFS transporter | - |
| BLI009_RS07120 () | 1652034..1652388 | + | 355 | Protein_1373 | IS3 family transposase ISBlo11 | Transposase |
| BLI009_RS07125 () | 1652427..1652873 | + | 447 | WP_065473541.1 | alcohol dehydrogenase | - |
| BLI009_RS07130 () | 1652953..1653930 | + | 978 | WP_007054454.1 | chorismate mutase | - |
| BLI009_RS07135 () | 1653924..1654988 | + | 1065 | WP_206648332.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| BLI009_RS07140 () | 1655180..1655437 | + | 258 | WP_007052610.1 | hypothetical protein | - |
| BLI009_RS07145 () | 1655472..1656533 | + | 1062 | WP_206648333.1 | Tyrosine recombinase XerC | VF |
| BLI009_RS07150 () | 1656787..1658427 | + | 1641 | WP_206648334.1 | ABC transporter substrate-binding protein | - |
| BLI009_RS07155 () | 1658728..1659654 | + | 927 | WP_206648335.1 | ABC transporter permease subunit | - |
| BLI009_RS07160 () | 1659675..1660679 | + | 1005 | WP_060620896.1 | ABC transporter permease | - |
| BLI009_RS07165 () | 1660702..1662711 | + | 2010 | WP_206648336.1 | Glutathione import ATP-binding protein GsiA | VF |
| BLI009_RS07170 () | 1663020..1663880 | - | 861 | WP_060620898.1 | exodeoxyribonuclease III | - |
| BLI009_RS07175 () | 1664005..1664859 | + | 855 | WP_206648337.1 | DUF3710 domain-containing protein | - |
| BLI009_RS07180 () | 1664875..1665654 | + | 780 | WP_206648338.1 | DUF3159 domain-containing protein | - |
| BLI009_RS07185 () | 1665644..1666912 | + | 1269 | WP_060620901.1 | class I SAM-dependent RNA methyltransferase | - |
| BLI009_RS07190 () | 1666924..1667619 | + | 696 | WP_065435924.1 | hypothetical protein | - |
| BLI009_RS07195 () | 1667710..1670259 | + | 2550 | WP_206648339.1 | HAD-IC family P-type ATPase | - |
| BLI009_RS07200 () | 1670380..1673079 | + | 2700 | WP_206648340.1 | aconitate hydratase AcnA | - |
| BLI009_RS07205 () | 1673225..1673587 | + | 363 | WP_011068030.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| BLI009_RS07210 () | 1673587..1674078 | + | 492 | WP_206648341.1 | PIN domain-containing protein | Toxin Detail |
| BLI009_RS07215 () | 1674138..1676243 | - | 2106 | WP_206648342.1 | DUF262 domain-containing protein | - |
| BLI009_RS07220 () | 1676332..1676973 | - | 642 | WP_206648343.1 | GNAT family N-acetyltransferase | - |
| BLI009_RS07225 () | 1677014..1677154 | - | 141 | Protein_1394 | response regulator transcription factor | - |
| BLI009_RS07230 () | 1677438..1678340 | + | 903 | WP_032745207.1 | Bax inhibitor-1/YccA family protein | - |
| BLI009_RS07235 () | 1678480..1679484 | + | 1005 | WP_206649228.1 | EamA family transporter | - |
| BLI009_RS07240 () | 1679517..1680257 | - | 741 | WP_080771594.1 | GTP pyrophosphokinase YwaC | VF |
| BLI009_RS07245 () | 1680404..1681588 | - | 1185 | WP_065435932.1 | IS256 family transposase ISBlo5 | Transposase |
| BLI009_RS07250 () | 1681833..1682003 | + | 171 | WP_158082793.1 | hypothetical protein | - |
| BLI009_RS07255 () | 1682076..1682915 | + | 840 | WP_060620910.1 | phosphotransferase | - |
| BLI009_RS07260 () | 1682912..1683670 | + | 759 | WP_206648344.1 | hypothetical protein | - |
| BLI009_RS07265 () | 1684475..1685053 | + | 579 | WP_065435934.1 | flavoprotein | - |
| BLI009_RS07270 () | 1685066..1685653 | + | 588 | WP_129558980.1 | hypothetical protein | - |
| BLI009_RS07275 () | 1685657..1686658 | + | 1002 | WP_206648345.1 | hypothetical protein | - |
| BLI009_RS07280 () | 1686672..1688297 | + | 1626 | WP_060620913.1 | ATP-binding cassette domain-containing protein | - |
| BLI009_RS07285 () | 1688842..1689876 | + | 1035 | WP_206649229.1 | IS30 family transposase ISBlo4 | Transposase |
| BLI009_RS07290 () | 1690152..1691353 | + | 1202 | Protein_1407 | IS110 family transposase ISSer1 | Transposase |
| BLI009_RS07295 () | 1691527..1692981 | + | 1455 | WP_060620915.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| BLI009_RS07300 () | 1692992..1693978 | + | 987 | WP_206648346.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| BLI009_RS07305 () | 1694012..1694761 | - | 750 | WP_014484740.1 | putative adenosine monophosphate-protein transferase fic | VF |
| BLI009_RS07310 () | 1694984..1697893 | + | 2910 | WP_206648347.1 | DNA translocase FtsK 4TM domain-containing protein | - |
| BLI009_RS07315 () | 1698073..1698708 | + | 636 | WP_060620917.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| BLI009_RS07320 () | 1698720..1699253 | + | 534 | WP_060620918.1 | CinA family protein | - |
| BLI009_RS07325 () | 1699313..1699828 | + | 516 | WP_077323764.1 | helix-turn-helix transcriptional regulator | - |
| BLI009_RS07330 () | 1699940..1700173 | + | 234 | WP_032745197.1 | DUF3046 domain-containing protein | - |
| BLI009_RS07335 () | 1700474..1701667 | + | 1194 | WP_206648348.1 | recombinase RecA | - |
| BLI009_RS07340 () | 1701670..1702263 | + | 594 | WP_206648349.1 | RecX family transcriptional regulator | - |
| BLI009_RS07350 () | 1703120..1703782 | + | 663 | WP_060620920.1 | ribosome-associated translation inhibitor RaiA | - |
| BLI009_RS07355 () | 1703944..1706838 | + | 2895 | WP_206648350.1 | preprotein translocase subunit SecA | - |
| BLI009_RS07360 () | 1706965..1707597 | - | 633 | WP_060620922.1 | GDSL family lipase | - |
| BLI009_RS07365 () | 1707821..1708867 | + | 1047 | WP_065436216.1 | anthranilate phosphoribosyltransferase | - |
| BLI009_RS07370 () | 1708864..1709520 | - | 657 | WP_206648351.1 | hypothetical protein | - |
| BLI009_RS07375 () | 1709581..1710282 | + | 702 | WP_012577321.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| BLI009_RS07380 () | 1710326..1712599 | - | 2274 | WP_206648352.1 | Serine/threonine-protein kinase PK-1 | VF |
| BLI009_RS07385 () | 1712743..1713825 | - | 1083 | WP_007058720.1 | polyprenyl synthetase family protein | - |
| BLI009_RS07390 () | 1714032..1714694 | + | 663 | WP_007052659.1 | DUF4192 family protein | - |
| BLI009_RS07395 () | 1714897..1716291 | + | 1395 | WP_032745188.1 | RNA polymerase sigma factor | - |
| BLI009_RS07400 () | 1716349..1718667 | + | 2319 | WP_206648353.1 | DNA gyrase subunit B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|