MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 48379 bp
Accession: NZ_CP071062 Location: 1873294..1921672 Organism: Dickeya solani strain IPO2019 Replicon: chromosome
Accession: NZ_CP071062 Location: 1873294..1921672 Organism: Dickeya solani strain IPO2019 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JYR06_RS08310 () | 1868580..1869254 | + | 675 | WP_022633092.1 | glutathione S-transferase family protein | - |
| JYR06_RS08315 () | 1869666..1870541 | - | 876 | WP_026594453.1 | alpha/beta hydrolase | - |
| JYR06_RS08320 () | 1870456..1871673 | - | 1218 | WP_022633094.1 | dienelactone hydrolase family protein | - |
| JYR06_RS08325 () | 1872075..1872362 | - | 288 | WP_146053333.1 | hypothetical protein | - |
| JYR06_RS08330 () | 1873825..1874889 | + | 1065 | WP_026594454.1 | DNA cytosine methyltransferase | - |
| JYR06_RS08335 () | 1874852..1877851 | + | 3000 | WP_080644163.1 | ATP-binding protein | - |
| JYR06_RS08340 () | 1877853..1879502 | + | 1650 | WP_022633097.1 | hypothetical protein | - |
| JYR06_RS08345 () | 1879863..1880264 | - | 402 | WP_023637748.1 | hypothetical protein | - |
| JYR06_RS08350 () | 1880328..1880621 | - | 294 | WP_146053334.1 | hypothetical protein | - |
| JYR06_RS08355 () | 1881012..1881956 | + | 945 | WP_022633099.1 | DUF1738 domain-containing protein | - |
| JYR06_RS08360 () | 1882277..1882513 | + | 237 | WP_022633100.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| JYR06_RS08365 () | 1882516..1882830 | + | 315 | WP_022633101.1 | CcdB family protein | Toxin Detail |
| JYR06_RS08370 () | 1882827..1883084 | - | 258 | WP_022633102.1 | hypothetical protein | - |
| JYR06_RS08375 () | 1883260..1884567 | - | 1308 | WP_022633103.1 | type II toxin-antitoxin system HipA family toxin | - |
| JYR06_RS08380 () | 1884567..1884974 | - | 408 | WP_071598628.1 | helix-turn-helix transcriptional regulator | - |
| JYR06_RS08385 () | 1885357..1886103 | - | 747 | WP_022633104.1 | hypothetical protein | - |
| JYR06_RS08390 () | 1886112..1887875 | - | 1764 | Protein_1637 | type IV secretory system conjugative DNA transfer family protein | - |
| JYR06_RS08395 () | 1888572..1888874 | - | 303 | WP_022633106.1 | KikA | - |
| JYR06_RS08400 () | 1888915..1889931 | - | 1017 | WP_022633107.1 | Xanthosine permease | VF |
| JYR06_RS08405 () | 1889921..1891129 | - | 1209 | Protein_1640 | Gamma-glutamyl phosphate reductase | VF |
| JYR06_RS08410 () | 1891126..1892016 | - | 891 | WP_022633110.1 | P-type conjugative transfer protein VirB9 | - |
| JYR06_RS08415 () | 1892016..1892699 | - | 684 | WP_022633111.1 | hypothetical protein | VF |
| JYR06_RS08420 () | 1892920..1893948 | - | 1029 | WP_022633112.1 | type IV secretion system protein | - |
| JYR06_RS08425 () | 1893960..1894184 | - | 225 | WP_022633113.1 | EexN family lipoprotein | - |
| JYR06_RS08430 () | 1894196..1894912 | - | 717 | WP_022633114.1 | type IV secretion system protein | - |
| JYR06_RS08435 () | 1894938..1897685 | - | 2748 | WP_022633115.1 | Sulfate transporter CysZ | VF |
| JYR06_RS08440 () | 1897695..1897970 | - | 276 | WP_012769221.1 | Cysteine synthase A | VF |
| JYR06_RS08445 () | 1897990..1898637 | - | 648 | WP_022633116.1 | Phosphocarrier protein HPr | VF |
| JYR06_RS08450 () | 1898707..1898940 | - | 234 | WP_022633117.1 | hypothetical protein | - |
| JYR06_RS08455 () | 1899506..1900021 | - | 516 | WP_022633118.1 | NAD(P)H-dependent oxidoreductase | - |
| JYR06_RS08460 () | 1900041..1901006 | - | 966 | WP_022633119.1 | aldo/keto reductase | - |
| JYR06_RS08465 () | 1901066..1901932 | - | 867 | WP_022633120.1 | SMP-30/gluconolactonase/LRE family protein | - |
| JYR06_RS08470 () | 1902015..1902488 | - | 474 | WP_022633121.1 | DMT family transporter | - |
| JYR06_RS08475 () | 1902500..1903897 | - | 1398 | WP_022633122.1 | amidohydrolase family protein | - |
| JYR06_RS08480 () | 1904029..1904913 | + | 885 | WP_022633123.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| JYR06_RS08485 () | 1905177..1905386 | - | 210 | WP_022633124.1 | TraR/DksA family transcriptional regulator | - |
| JYR06_RS08490 () | 1905376..1905960 | - | 585 | WP_022633125.1 | DUF2857 domain-containing protein | - |
| JYR06_RS08495 () | 1905977..1906171 | - | 195 | WP_022633126.1 | AlpA family transcriptional regulator | - |
| JYR06_RS08500 () | 1906847..1907104 | - | 258 | WP_012769229.1 | helix-turn-helix domain-containing protein | - |
| JYR06_RS08505 () | 1907218..1907496 | - | 279 | WP_012884168.1 | N-acetylmuramic acid 6-phosphate etherase | VF |
| JYR06_RS08510 () | 1907630..1907917 | + | 288 | WP_022633127.1 | helix-turn-helix domain-containing protein | - |
| JYR06_RS08515 () | 1908195..1908440 | - | 246 | WP_013318575.1 | helix-turn-helix transcriptional regulator | - |
| JYR06_RS08520 () | 1909124..1909642 | + | 519 | WP_022633128.1 | hypothetical protein | VF |
| JYR06_RS08525 () | 1909755..1911617 | + | 1863 | WP_022633129.1 | Shikimate kinase 2 | VF |
| JYR06_RS08530 () | 1911695..1912135 | + | 441 | WP_023637755.1 | DUF1795 domain-containing protein | - |
| JYR06_RS08535 () | 1912153..1915983 | + | 3831 | Protein_1666 | PAAR domain-containing protein | - |
| JYR06_RS08540 () | 1916352..1917197 | + | 846 | WP_023637756.1 | hypothetical protein | - |
| JYR06_RS08545 () | 1917496..1917642 | + | 147 | WP_155246175.1 | hypothetical protein | - |
| JYR06_RS08550 () | 1917804..1918730 | - | 927 | WP_022633133.1 | hypothetical protein | - |
| JYR06_RS08555 () | 1919746..1920057 | + | 312 | WP_022633134.1 | DUF736 domain-containing protein | - |
| JYR06_RS08560 () | 1920213..1921495 | - | 1283 | Protein_1671 | Oxygen-dependent coproporphyrinogen-III oxidase ; Integrase | Integrase |
| JYR06_RS08570 () | 1921842..1922633 | - | 792 | WP_022633137.1 | DgsA anti-repressor MtfA | - |
| JYR06_RS08580 () | 1923496..1924647 | - | 1152 | WP_022633138.1 | type I restriction enzyme HsdR N-terminal domain-containing protein | - |
| JYR06_RS08585 () | 1924681..1925070 | - | 390 | WP_023637758.1 | helix-turn-helix domain-containing protein | - |
| JYR06_RS08590 () | 1925498..1925665 | + | 168 | WP_022633139.1 | YqaE/Pmp3 family membrane protein | - |
| JYR06_RS08595 () | 1925738..1926292 | - | 555 | WP_022633140.1 | flavodoxin family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|