MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 43229 bp
Accession: NZ_CP070229 Location: 1017621..1060849 Organism: Escherichia coli strain EC12 Replicon: chromosome
Accession: NZ_CP070229 Location: 1017621..1060849 Organism: Escherichia coli strain EC12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JTC67_RS05390 (1012948) | 1012948..1013535 | - | 588 | WP_024231842.1 | hydrogenase 1 maturation protease | - |
| JTC67_RS05395 (1013532) | 1013532..1014239 | - | 708 | WP_001186413.1 | Ni/Fe-hydrogenase b-type cytochrome subunit | - |
| JTC67_RS05400 (1014258) | 1014258..1016051 | - | 1794 | WP_000107398.1 | Ni/Fe-hydrogenase large subunit | - |
| JTC67_RS05405 (1016048) | 1016048..1017166 | - | 1119 | WP_001295940.1 | hydrogenase 1 small subunit | - |
| JTC67_RS05415 (1018283) | 1018283..1019035 | + | 753 | WP_233679781.1 | Secreted effector protein EspF(U) | VF |
| JTC67_RS05420 (1019161) | 1019161..1019430 | - | 270 | WP_074448965.1 | phage tail fiber C-terminal domain-containing protein | - |
| JTC67_RS05425 (1019432) | 1019432..1020745 | - | 1314 | WP_233679782.1 | ISNCY family transposase KIS | Transposase |
| JTC67_RS05430 (1020805) | 1020805..1021404 | - | 600 | WP_074448988.1 | Outer membrane protein X | VF |
| JTC67_RS05435 (1021472) | 1021472..1024867 | - | 3396 | WP_074448987.1 | host specificity protein J | - |
| JTC67_RS05440 (1024928) | 1024928..1025575 | - | 648 | WP_072754479.1 | tail assembly protein | - |
| JTC67_RS05445 (1025473) | 1025473..1026216 | - | 744 | WP_233679783.1 | C40 family peptidase | - |
| JTC67_RS05450 (1026222) | 1026222..1026920 | - | 699 | WP_233679784.1 | phage minor tail protein L | - |
| JTC67_RS05455 (1026920) | 1026920..1027261 | - | 342 | WP_001115181.1 | phage tail protein | - |
| JTC67_RS05460 (1027254) | 1027254..1030454 | - | 3201 | WP_233679785.1 | phage tail tape measure protein | - |
| JTC67_RS05465 (1030501) | 1030501..1030779 | - | 279 | WP_000978930.1 | DUF4035 domain-containing protein | - |
| JTC67_RS05470 (1030803) | 1030803..1031174 | - | 372 | WP_000164661.1 | phage tail assembly chaperone | - |
| JTC67_RS05475 (1031189) | 1031189..1031893 | - | 705 | WP_021537293.1 | immunoglobulin domain-containing protein | - |
| JTC67_RS05480 (1031954) | 1031954..1032298 | - | 345 | WP_001209397.1 | DUF3168 domain-containing protein | - |
| JTC67_RS05485 (1032295) | 1032295..1032744 | - | 450 | WP_001312916.1 | HK97 gp10 family phage protein | - |
| JTC67_RS05490 (1032741) | 1032741..1033079 | - | 339 | WP_001147820.1 | phage head closure protein | - |
| JTC67_RS05495 (1033088) | 1033088..1033393 | - | 306 | WP_000983037.1 | head-tail connector protein | - |
| JTC67_RS05500 (1033405) | 1033405..1033593 | - | 189 | WP_233679786.1 | hypothetical protein | - |
| JTC67_RS05505 (1033645) | 1033645..1034850 | - | 1206 | WP_097426910.1 | phage major capsid protein | - |
| JTC67_RS05510 (1034865) | 1034865..1035515 | - | 651 | WP_001193631.1 | HK97 family phage prohead protease | - |
| JTC67_RS05515 (1035493) | 1035493..1036734 | - | 1242 | WP_000466258.1 | phage portal protein | - |
| JTC67_RS05520 (1036734) | 1036734..1036916 | - | 183 | WP_000478568.1 | hypothetical protein | - |
| JTC67_RS05525 (1036928) | 1036928..1038685 | - | 1758 | WP_001140882.1 | terminase large subunit | - |
| JTC67_RS05530 (1038685) | 1038685..1039167 | - | 483 | WP_074448924.1 | phage terminase small subunit P27 family | - |
| JTC67_RS05535 (1039315) | 1039315..1039665 | - | 351 | WP_001140099.1 | HNH endonuclease signature motif containing protein | - |
| JTC67_RS05540 (1039770) | 1039770..1039955 | - | 186 | WP_001228685.1 | Rz1 family lipoprotein | - |
| JTC67_RS05545 (1040172) | 1040172..1040648 | - | 477 | WP_001197753.1 | glycoside hydrolase family protein | - |
| JTC67_RS05550 (1040652) | 1040652..1040987 | - | 336 | WP_001120501.1 | phage holin, lambda family | - |
| JTC67_RS05555 (1041064) | 1041064..1042116 | - | 1053 | WP_074448922.1 | site-specific DNA-methyltransferase | - |
| JTC67_RS05560 (1042267) | 1042267..1042464 | - | 198 | WP_000917767.1 | hypothetical protein | - |
| JTC67_RS05565 (1042689) | 1042689..1043252 | - | 564 | WP_074448921.1 | ORF6N domain-containing protein | - |
| JTC67_RS05570 (1043735) | 1043735..1044121 | - | 387 | WP_074448920.1 | antiterminator Q family protein | - |
| JTC67_RS05575 (1044111) | 1044111..1044488 | - | 378 | WP_074448919.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JTC67_RS05580 (1044489) | 1044489..1045547 | - | 1059 | WP_074448918.1 | DUF968 domain-containing protein | - |
| JTC67_RS05585 (1045549) | 1045549..1045827 | - | 279 | WP_053883582.1 | hypothetical protein | - |
| JTC67_RS05590 (1045995) | 1045995..1046150 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JTC67_RS05595 (1046782) | 1046782..1047690 | + | 909 | WP_074448917.1 | LysR family transcriptional regulator | - |
| JTC67_RS05600 (1047826) | 1047826..1048332 | + | 507 | WP_024246362.1 | polyketide cyclase | - |
| JTC67_RS05605 (1048685) | 1048685..1049161 | + | 477 | WP_233679787.1 | IS66 family transposase ISEc23 | Transposase |
| JTC67_RS05610 (1049100) | 1049100..1049450 | + | 351 | WP_000624677.1 | IS66 family transposase IS682 | Transposase |
| JTC67_RS05615 (1049480) | 1049480..1051070 | + | 1591 | Protein_1113 | IS66 family transposase ISEc47 | Transposase |
| JTC67_RS05620 (1051097) | 1051097..1051495 | - | 399 | WP_233679788.1 | DUF977 family protein | - |
| JTC67_RS05625 (1051536) | 1051536..1052606 | - | 1071 | WP_074448915.1 | phage replisome organizer | - |
| JTC67_RS05630 (1052678) | 1052678..1053103 | - | 426 | WP_062897995.1 | toxin YdaT family protein | - |
| JTC67_RS05635 (1053100) | 1053100..1053402 | - | 303 | WP_000172735.1 | transcriptional regulator | - |
| JTC67_RS05640 (1053500) | 1053500..1053871 | + | 372 | WP_122993177.1 | hypothetical protein | - |
| JTC67_RS05645 (1053892) | 1053892..1054083 | + | 192 | WP_032300357.1 | hypothetical protein | Antitoxin Detail |
| JTC67_RS05650 (1054085) | 1054085..1054363 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JTC67_RS05655 (1054716) | 1054716..1055015 | + | 300 | WP_044705881.1 | hypothetical protein | - |
| JTC67_RS05660 (1055087) | 1055087..1055305 | + | 219 | WP_001171942.1 | protein YdfC | - |
| JTC67_RS05665 (1055328) | 1055328..1055735 | + | 408 | WP_074448913.1 | hypothetical protein | - |
| JTC67_RS05670 (1055713) | 1055713..1055946 | - | 234 | WP_000920491.1 | hypothetical protein | - |
| JTC67_RS05675 (1056512) | 1056512..1056733 | + | 222 | WP_000560212.1 | cell division protein FtsZ | - |
| JTC67_RS05680 (1056857) | 1056857..1059337 | + | 2481 | WP_074448912.1 | exonuclease | - |
| JTC67_RS05685 (1059404) | 1059404..1059655 | + | 252 | WP_000273161.1 | DUF4224 domain-containing protein | - |
| JTC67_RS05690 (1059624) | 1059624..1060643 | + | 1020 | WP_074448911.1 | hypothetical protein ; Integrase | Integrase |
| JTC67_RS05695 (1061053) | 1061053..1061712 | + | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| JTC67_RS05700 (1061804) | 1061804..1062133 | + | 330 | WP_000904439.1 | sulfurtransferase TusE | - |
| JTC67_RS05705 (1062130) | 1062130..1062408 | - | 279 | WP_000048231.1 | acylphosphatase | - |
| JTC67_RS05710 (1062503) | 1062503..1063693 | + | 1191 | WP_029787408.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| JTC67_RS05715 (1063751) | 1063751..1064068 | + | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| JTC67_RS05720 (1064113) | 1064113..1064526 | - | 414 | WP_000665217.1 | CoA-binding protein | - |
| JTC67_RS05725 (1064699) | 1064699..1065361 | + | 663 | WP_000847791.1 | DUF2057 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|