MGE detailed information
MGE type: Genomic_island MGE length: 12838 bp
Accession: NZ_CP069542 Location: 2852517..2865354 Organism: Escherichia coli strain FDAARGOS_1248 Replicon: chromosome
Accession: NZ_CP069542 Location: 2852517..2865354 Organism: Escherichia coli strain FDAARGOS_1248 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J78_RS13580 () | 2848058..2849080 | - | 1023 | WP_000172465.1 | autoinducer 2 ABC transporter substrate-binding protein LsrB | - |
| I6J78_RS13585 () | 2849092..2850084 | - | 993 | WP_158138262.1 | autoinducer 2 ABC transporter permease LsrD | - |
| I6J78_RS13590 () | 2850084..2850608 | - | 525 | Protein_2640 | autoinducer 2 ABC transporter permease LsrC | - |
| I6J78_RS13595 () | 2850611..2851564 | + | 954 | WP_000154342.1 | transcriptional regulator LsrR | - |
| I6J78_RS13600 () | 2851643..2851822 | + | 180 | Protein_2642 | hypothetical protein | - |
| I6J78_RS13605 () | 2851824..2852294 | + | 471 | Protein_2643 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| I6J78_RS13610 () | 2852517..2852783 | + | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| I6J78_RS13615 () | 2852783..2854105 | + | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| I6J78_RS13620 () | 2854417..2854625 | + | 209 | Protein_2646 | helix-turn-helix transcriptional regulator | - |
| I6J78_RS13625 () | 2854653..2855357 | + | 705 | Protein_2647 | Outer membrane usher protein FimD | VF |
| I6J78_RS13630 () | 2855371..2855721 | + | 351 | Protein_2648 | Protein FimF | VF |
| I6J78_RS13635 () | 2855738..2856435 | - | 698 | Protein_2649 | IS1 family transposase | - |
| I6J78_RS13640 () | 2856490..2856678 | + | 189 | Protein_2650 | Protein FimF | VF |
| I6J78_RS13645 () | 2856691..2857194 | + | 504 | WP_000825452.1 | Protein FimG | VF |
| I6J78_RS13650 () | 2857253..2858167 | + | 915 | WP_000520676.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| I6J78_RS13655 () | 2858501..2860780 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| I6J78_RS13660 () | 2861028..2861225 | + | 198 | WP_000543384.1 | two-component system connector SafA | - |
| I6J78_RS13665 () | 2861300..2862061 | + | 762 | WP_000060492.1 | acid stress response transcriptional regulator YdeO | - |
| I6J78_RS13670 () | 2862463..2864145 | + | 1683 | WP_001295684.1 | sulfatase | - |
| I6J78_RS13675 () | 2864197..2865354 | + | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| I6J78_RS13680 () | 2865320..2865442 | - | 123 | WP_120795387.1 | protein YneP | - |
| I6J78_RS13685 () | 2865645..2867330 | + | 1686 | WP_000628576.1 | ABC transporter ATP-binding protein/permease | - |
| I6J78_RS13690 () | 2867368..2869740 | + | 2373 | WP_000832437.1 | TonB-dependent receptor plug domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.006 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.006 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.008 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.006 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.006 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.006 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.006 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.006 |