MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 87920 bp
Accession: NZ_CP069080 Location: 3031192..3119111 Organism: Pseudomonas putida strain LWPZF Replicon: chromosome
Accession: NZ_CP069080 Location: 3031192..3119111 Organism: Pseudomonas putida strain LWPZF Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNO42_RS14045 (JNO42_13945) | 3027278..3029470 | + | 2193 | WP_239608065.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| JNO42_RS14050 (JNO42_13950) | 3029535..3031025 | + | 1491 | WP_239608066.1 | hypothetical protein | - |
| JNO42_RS14055 (JNO42_13955) | 3032044..3032790 | + | 747 | WP_100773594.1 | hypothetical protein | - |
| JNO42_RS14060 (JNO42_13960) | 3032909..3033121 | + | 213 | WP_012112310.1 | AlpA family transcriptional regulator | - |
| JNO42_RS14065 (JNO42_13965) | 3033165..3034037 | + | 873 | WP_023106363.1 | hypothetical protein | VF |
| JNO42_RS14070 (JNO42_13970) | 3034021..3034272 | + | 252 | WP_023106362.1 | hypothetical protein | - |
| JNO42_RS14075 (JNO42_13975) | 3034265..3035929 | + | 1665 | WP_023106361.1 | ParB family protein | - |
| JNO42_RS14080 (JNO42_13980) | 3035945..3036505 | + | 561 | WP_023106360.1 | DUF2857 domain-containing protein | - |
| JNO42_RS14085 (JNO42_13985) | 3036509..3037759 | + | 1251 | WP_100773595.1 | STY4528 family pathogenicity island replication protein | - |
| JNO42_RS14090 (JNO42_13990) | 3038090..3038869 | + | 780 | WP_011871436.1 | TIGR03761 family integrating conjugative element protein | - |
| JNO42_RS14095 (JNO42_13995) | 3038866..3039393 | + | 528 | WP_023106358.1 | DUF3158 family protein | - |
| JNO42_RS14100 (JNO42_14000) | 3039467..3039907 | + | 441 | WP_023106357.1 | single-stranded DNA-binding protein | - |
| JNO42_RS14105 (JNO42_14005) | 3040188..3042215 | + | 2028 | WP_100773596.1 | DNA topoisomerase III | - |
| JNO42_RS14110 (JNO42_14010) | 3043138..3043350 | + | 213 | WP_009876578.1 | hypothetical protein | - |
| JNO42_RS14115 (JNO42_14015) | 3043372..3043764 | + | 393 | WP_009876579.1 | hypothetical protein | - |
| JNO42_RS14120 (JNO42_14020) | 3043979..3044716 | + | 738 | WP_023106355.1 | hypothetical protein | - |
| JNO42_RS14125 (JNO42_14025) | 3044813..3045091 | + | 279 | WP_023106354.1 | hypothetical protein | - |
| JNO42_RS14130 (JNO42_14030) | 3045381..3046193 | + | 813 | WP_023106353.1 | hypothetical protein | - |
| JNO42_RS14135 (JNO42_14035) | 3046336..3046689 | + | 354 | WP_023106352.1 | DUF3085 domain-containing protein | - |
| JNO42_RS14140 (JNO42_14040) | 3047055..3047984 | + | 930 | WP_100773598.1 | DUF3577 domain-containing protein | - |
| JNO42_RS14145 (JNO42_14045) | 3048137..3048964 | + | 828 | WP_100773599.1 | DUF932 domain-containing protein | - |
| JNO42_RS14150 (JNO42_14050) | 3049060..3049749 | + | 690 | WP_100773600.1 | DUF3275 family protein | - |
| JNO42_RS14155 (JNO42_14055) | 3049844..3050167 | + | 324 | WP_100773601.1 | hypothetical protein | - |
| JNO42_RS14160 (JNO42_14060) | 3050270..3050677 | + | 408 | WP_100773602.1 | hypothetical protein | - |
| JNO42_RS14165 (JNO42_14065) | 3050694..3050954 | + | 261 | WP_100773603.1 | hypothetical protein | - |
| JNO42_RS14170 (JNO42_14070) | 3051031..3051678 | + | 648 | WP_100773604.1 | hypothetical protein | - |
| JNO42_RS14175 (JNO42_14075) | 3051719..3052852 | + | 1134 | WP_275591301.1 | DUF6094 domain-containing protein | - |
| JNO42_RS14180 (JNO42_14080) | 3052903..3053223 | + | 321 | WP_100773606.1 | methyltransferase | - |
| JNO42_RS14185 (JNO42_14085) | 3053313..3053618 | + | 306 | WP_100773607.1 | hypothetical protein | - |
| JNO42_RS14190 (JNO42_14090) | 3053756..3056035 | + | 2280 | WP_100773608.1 | helicase-related protein | - |
| JNO42_RS14195 (JNO42_14095) | 3056174..3056953 | + | 780 | WP_172606998.1 | competence protein CoiA family protein | - |
| JNO42_RS14200 (JNO42_14100) | 3057020..3058834 | - | 1815 | WP_023106345.1 | ATP-dependent helicase | - |
| JNO42_RS14205 (JNO42_14105) | 3058821..3060587 | - | 1767 | WP_196996634.1 | AAA family ATPase | - |
| JNO42_RS14210 (JNO42_14110) | 3060831..3061430 | + | 600 | WP_100773663.1 | hypothetical protein | VF |
| JNO42_RS14215 (JNO42_14115) | 3061427..3062068 | + | 642 | WP_100773610.1 | hypothetical protein | - |
| JNO42_RS14220 (JNO42_14120) | 3062083..3062808 | + | 726 | WP_100773611.1 | TIGR03759 family integrating conjugative element protein | - |
| JNO42_RS14225 (JNO42_14125) | 3062790..3063380 | + | 591 | WP_100773612.1 | transglycosylase SLT domain-containing protein | - |
| JNO42_RS14230 (JNO42_14130) | 3063377..3063925 | + | 549 | WP_100773613.1 | integrating conjugative element protein | - |
| JNO42_RS14235 (JNO42_14135) | 3063930..3066119 | + | 2190 | WP_100773614.1 | type IV conjugative transfer system coupling protein TraD | - |
| JNO42_RS14240 (JNO42_14140) | 3066116..3066865 | + | 750 | WP_100773615.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| JNO42_RS14245 (JNO42_14145) | 3066871..3069495 | - | 2625 | WP_100773616.1 | AAA family ATPase | - |
| JNO42_RS14250 (JNO42_14150) | 3069686..3070411 | - | 726 | WP_100773617.1 | CBASS effector endonuclease NucC | - |
| JNO42_RS14255 (JNO42_14155) | 3070448..3071350 | - | 903 | WP_100773618.1 | CBASS oligonucleotide cyclase | - |
| JNO42_RS14260 (JNO42_14160) | 3071350..3071850 | - | 501 | WP_100773619.1 | type III CBASS phage resistance system CD-NTase-associated protein Cap7 | - |
| JNO42_RS14265 (JNO42_14165) | 3071847..3072317 | - | 471 | WP_100773620.1 | hypothetical protein | - |
| JNO42_RS14270 (JNO42_14170) | 3072314..3073228 | - | 915 | WP_100773621.1 | AAA family ATPase | - |
| JNO42_RS14275 (JNO42_14175) | 3073246..3073821 | - | 576 | WP_239608071.1 | PIN domain-containing protein | Toxin Detail |
| JNO42_RS14280 (JNO42_14180) | 3073818..3074285 | - | 468 | WP_043156233.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| JNO42_RS14285 (JNO42_14185) | 3074499..3074879 | + | 381 | WP_100773623.1 | RAQPRD family integrative conjugative element protein | - |
| JNO42_RS14290 (JNO42_14190) | 3074876..3075109 | + | 234 | WP_003050225.1 | TIGR03758 family integrating conjugative element protein | - |
| JNO42_RS14295 (JNO42_14195) | 3075126..3075485 | + | 360 | WP_100773624.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| JNO42_RS14300 (JNO42_14200) | 3075497..3075895 | + | 399 | WP_100773625.1 | TIGR03750 family conjugal transfer protein | - |
| JNO42_RS14305 (JNO42_14205) | 3075892..3076581 | + | 690 | WP_100773626.1 | TIGR03746 family integrating conjugative element protein | - |
| JNO42_RS14310 (JNO42_14210) | 3076578..3077504 | + | 927 | WP_100773627.1 | TIGR03749 family integrating conjugative element protein | - |
| JNO42_RS14315 (JNO42_14215) | 3077494..3078912 | + | 1419 | WP_100773628.1 | TIGR03752 family integrating conjugative element protein | - |
| JNO42_RS14320 (JNO42_14220) | 3078893..3079333 | + | 441 | WP_009459662.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| JNO42_RS14325 (JNO42_14225) | 3079333..3082200 | + | 2868 | WP_100773629.1 | conjugative transfer ATPase | - |
| JNO42_RS14330 (JNO42_14230) | 3082214..3082978 | + | 765 | WP_100773630.1 | DsbA family protein | - |
| JNO42_RS14335 (JNO42_14235) | 3083157..3083651 | + | 495 | WP_100773631.1 | DNA repair protein RadC | - |
| JNO42_RS14340 (JNO42_14240) | 3083813..3084259 | + | 447 | WP_100773632.1 | TIGR03757 family integrating conjugative element protein | - |
| JNO42_RS14345 (JNO42_14245) | 3084256..3085203 | + | 948 | WP_100773633.1 | TIGR03756 family integrating conjugative element protein | - |
| JNO42_RS14350 (JNO42_14250) | 3085213..3086607 | + | 1395 | WP_100773634.1 | integrating conjugative element protein | - |
| JNO42_RS14355 (JNO42_14255) | 3086604..3086960 | + | 357 | WP_192439833.1 | hypothetical protein | - |
| JNO42_RS14360 (JNO42_14260) | 3086976..3088496 | + | 1521 | WP_100773635.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| JNO42_RS14365 (JNO42_14265) | 3088508..3088870 | - | 363 | WP_100773636.1 | DUF3742 family protein | - |
| JNO42_RS14370 (JNO42_14270) | 3088956..3089588 | - | 633 | WP_196996636.1 | RES family NAD+ phosphorylase | - |
| JNO42_RS14375 (JNO42_14275) | 3089601..3090227 | - | 627 | WP_073653359.1 | integrase | - |
| JNO42_RS14380 (JNO42_14280) | 3090548..3092386 | + | 1839 | WP_073653358.1 | MobH family relaxase | - |
| JNO42_RS14385 (JNO42_14285) | 3092467..3095118 | - | 2652 | WP_073653357.1 | UvrABC system protein A | VF |
| JNO42_RS14390 (JNO42_14290) | 3095144..3097009 | - | 1866 | WP_058166154.1 | Na+/H+ antiporter NhaA | - |
| JNO42_RS14395 (JNO42_14295) | 3097070..3098383 | - | 1314 | WP_073653356.1 | replication-associated recombination protein A | - |
| JNO42_RS14400 (JNO42_14300) | 3098435..3099742 | - | 1308 | WP_073653355.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| JNO42_RS14405 (JNO42_14305) | 3099761..3100591 | - | 831 | WP_007182551.1 | S-formylglutathione hydrolase | - |
| JNO42_RS14410 (JNO42_14310) | 3100650..3101984 | - | 1335 | WP_034007262.1 | DUF3422 family protein | - |
| JNO42_RS14415 (JNO42_14315) | 3102167..3102565 | - | 399 | WP_034007259.1 | VOC family protein | - |
| JNO42_RS14420 (JNO42_14320) | 3102609..3103718 | - | 1110 | WP_011871467.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| JNO42_RS14425 (JNO42_14325) | 3103778..3104053 | - | 276 | WP_023093413.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| JNO42_RS14430 (JNO42_14330) | 3104336..3105226 | - | 891 | WP_073653353.1 | carbon-nitrogen hydrolase family protein | - |
| JNO42_RS14435 (JNO42_14335) | 3105223..3105831 | - | 609 | WP_073653352.1 | GNAT family acetyltransferase | - |
| JNO42_RS14440 (JNO42_14340) | 3105833..3106240 | - | 408 | WP_073653351.1 | ketosteroid isomerase-related protein | - |
| JNO42_RS14445 (JNO42_14345) | 3106395..3107300 | + | 906 | WP_073653350.1 | LysR family transcriptional regulator | - |
| JNO42_RS14450 (JNO42_14350) | 3107451..3109427 | - | 1977 | WP_034007101.1 | excinuclease ABC subunit UvrB | - |
| JNO42_RS14455 (JNO42_14355) | 3109802..3110233 | - | 432 | WP_034007103.1 | DUF488 domain-containing protein | - |
| JNO42_RS14460 (JNO42_14360) | 3110714..3111655 | + | 942 | WP_073653349.1 | LysR family transcriptional regulator | - |
| JNO42_RS14465 (JNO42_14365) | 3112122..3113336 | + | 1215 | WP_023093406.1 | glutathione-independent formaldehyde dehydrogenase | - |
| JNO42_RS14470 (JNO42_14370) | 3113821..3114711 | + | 891 | WP_023103878.1 | LysR family transcriptional regulator | - |
| JNO42_RS14475 (JNO42_14375) | 3114734..3115027 | - | 294 | WP_009459591.1 | helix-turn-helix transcriptional regulator | - |
| JNO42_RS14480 (JNO42_14380) | 3115147..3115800 | + | 654 | WP_034007105.1 | substrate-binding domain-containing protein | - |
| JNO42_RS14485 (JNO42_14385) | 3115919..3116887 | + | 969 | WP_034007106.1 | Dyp-type peroxidase | - |
| JNO42_RS14490 (JNO42_14390) | 3116926..3118869 | - | 1944 | WP_073653347.1 | Prophage integrase IntS ; Integrase | Integrase |
| JNO42_RS14520 (JNO42_14420) | 3119990..3120757 | + | 768 | WP_121783881.1 | hypothetical protein | - |
| JNO42_RS14525 (JNO42_14425) | 3120833..3121315 | - | 483 | WP_064491526.1 | GAF domain-containing protein | - |
| JNO42_RS14530 (JNO42_14430) | 3121316..3122203 | - | 888 | WP_003247104.1 | ATP-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|