MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 73582 bp
Accession: NZ_CP068829 Location: 828949..902530 Organism: Escherichia coli strain RIVM_C030453 Replicon: chromosome
Accession: NZ_CP068829 Location: 828949..902530 Organism: Escherichia coli strain RIVM_C030453 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN50_RS03890 () | 824773..825921 | - | 1149 | WP_000905920.1 | capsule polysaccharide export inner-membrane protein KpsE | - |
| JNN50_RS03895 () | 825993..826976 | - | 984 | WP_001296394.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
| JNN50_RS03900 () | 827128..827825 | + | 698 | Protein_765 | IS1 family transposase | - |
| JNN50_RS03905 () | 828563..828733 | - | 171 | Protein_766 | IS110 family transposase | - |
| JNN50_RS03910 () | 829076..829918 | - | 843 | Protein_767 | DUF4942 domain-containing protein | - |
| JNN50_RS03915 () | 830003..830197 | - | 195 | WP_024181941.1 | DUF957 domain-containing protein | - |
| JNN50_RS03920 () | 830276..830425 | - | 150 | Protein_769 | hypothetical protein | - |
| JNN50_RS03925 () | 830422..830799 | - | 378 | WP_001564063.1 | TA system toxin CbtA family protein | Toxin Detail |
| JNN50_RS03930 () | 830889..831257 | - | 369 | WP_021553056.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| JNN50_RS03935 () | 831420..831641 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| JNN50_RS03940 () | 831706..832182 | - | 477 | WP_021553055.1 | RadC family protein | - |
| JNN50_RS03945 () | 832198..832677 | - | 480 | WP_001564060.1 | antirestriction protein | - |
| JNN50_RS03950 () | 832943..833761 | - | 819 | WP_001564059.1 | DUF945 domain-containing protein | - |
| JNN50_RS03955 () | 833851..834084 | - | 234 | WP_001278293.1 | DUF905 family protein | - |
| JNN50_RS03960 () | 834090..834767 | - | 678 | WP_001564058.1 | hypothetical protein | - |
| JNN50_RS03965 () | 834918..835598 | - | 681 | WP_001278649.1 | WYL domain-containing protein | - |
| JNN50_RS03970 () | 835801..836685 | - | 885 | WP_001564055.1 | 50S ribosome-binding GTPase | - |
| JNN50_RS03975 () | 836786..838009 | + | 1224 | WP_001107219.1 | hypothetical protein | - |
| JNN50_RS03980 () | 839172..839702 | - | 531 | WP_000778605.1 | hypothetical protein | - |
| JNN50_RS03985 () | 840372..841103 | + | 732 | WP_001075495.1 | inovirus Gp2 family protein | - |
| JNN50_RS03990 () | 841624..842076 | + | 453 | WP_000558152.1 | N-acetyltransferase | - |
| JNN50_RS03995 () | 842612..843547 | + | 936 | WP_000332862.1 | pseudouridine kinase | - |
| JNN50_RS04000 () | 843540..844475 | + | 936 | WP_001290195.1 | pseudouridine-5'-phosphate glycosidase | - |
| JNN50_RS04005 () | 844559..845809 | + | 1251 | WP_001328687.1 | NupC/NupG family nucleoside CNT transporter | - |
| JNN50_RS04010 () | 845828..846922 | - | 1095 | WP_000370278.1 | sugar kinase | - |
| JNN50_RS04015 () | 848223..848789 | + | 567 | WP_001126810.1 | inovirus-type Gp2 protein | - |
| JNN50_RS04020 () | 849047..849622 | + | 576 | WP_001564054.1 | hypothetical protein | - |
| JNN50_RS04025 () | 849691..849924 | + | 234 | WP_000958492.1 | AlpA family transcriptional regulator | - |
| JNN50_RS04030 () | 849936..850161 | + | 226 | Protein_791 | hypothetical protein | - |
| JNN50_RS04035 () | 850223..850489 | - | 267 | Protein_792 | transposase | - |
| JNN50_RS04040 () | 850580..851737 | + | 1158 | Protein_793 | efflux RND transporter permease subunit | - |
| JNN50_RS04045 () | 851858..852508 | + | 651 | WP_001564048.1 | TetR/AcrR family transcriptional regulator | - |
| JNN50_RS04050 () | 852531..852824 | + | 294 | Protein_795 | helix-turn-helix domain-containing protein | - |
| JNN50_RS04055 () | 853181..853726 | - | 546 | WP_001564047.1 | propanediol utilization system shell hexameric protein GrpS | - |
| JNN50_RS04060 () | 853771..854922 | - | 1152 | WP_001001003.1 | propanediol utilization system methionine adenosyltransferase GrpR | - |
| JNN50_RS04065 () | 855051..856106 | - | 1056 | WP_001564046.1 | propanediol utilization response regulator transcription factor GrpQ | - |
| JNN50_RS04070 () | 856123..857352 | - | 1230 | WP_000792585.1 | propanediol utilization sensor histidine kinase GrpP | - |
| JNN50_RS04075 () | 857968..858561 | - | 594 | Protein_800 | maturase | - |
| JNN50_RS04080 () | 858561..858930 | - | 370 | Protein_801 | reverse transcriptase/maturase | - |
| JNN50_RS04085 () | 859542..860447 | - | 906 | WP_001564044.1 | propanediol utilization system permease GrpO | - |
| JNN50_RS04090 () | 860584..861501 | - | 918 | WP_001564043.1 | glycyl radical diol dehydratase-activating enzyme GrpN | - |
| JNN50_RS04095 () | 861610..864162 | - | 2553 | WP_000890295.1 | glycyl radical diol dehydratase GrpM | - |
| JNN50_RS04100 () | 864211..864786 | - | 576 | WP_000722279.1 | propanediol utilization system protease GrpL | - |
| JNN50_RS04105 () | 864797..865096 | - | 300 | WP_000746009.1 | propanediol utilization system shell hexameric protein GrpK | - |
| JNN50_RS04110 () | 865120..866637 | - | 1518 | WP_000997839.1 | propanediol utilization system aldehyde dehydrogenase GrpJ | - |
| JNN50_RS04115 () | 866698..867483 | - | 786 | WP_001205499.1 | propanediol utilization microcompartment protein GrpI | - |
| JNN50_RS04120 () | 867505..867786 | - | 282 | WP_001301171.1 | propanediol utilization system shell hexameric protein GrpH | - |
| JNN50_RS04125 () | 868071..869267 | - | 1197 | WP_001362987.1 | propanediol utilization system propionate kinase GrpG | - |
| JNN50_RS04130 () | 869296..869793 | - | 498 | WP_001564042.1 | propanediol utilization system heme-binding protein GrpF | - |
| JNN50_RS04135 () | 869821..870090 | - | 270 | WP_001564041.1 | propanediol utilization microcompartment vertex protein GrpE | - |
| JNN50_RS04140 () | 870102..870806 | - | 705 | WP_000370214.1 | propanediol utilization system flavoprotein GrpD | - |
| JNN50_RS04145 () | 870811..871569 | - | 759 | WP_001332070.1 | propanediol utilization system chaperone GrpC | - |
| JNN50_RS04150 () | 871624..872310 | - | 687 | WP_001109982.1 | propanediol utilization system phosphotransacylase GrpB | - |
| JNN50_RS04155 () | 872450..873568 | - | 1119 | WP_000135343.1 | propanediol utilization system alcohol dehydrogenase GrpA | - |
| JNN50_RS04160 () | 873925..874425 | + | 501 | Protein_817 | DNA-binding protein | - |
| JNN50_RS04165 () | 874521..874754 | + | 234 | WP_000124185.1 | hypothetical protein | - |
| JNN50_RS04170 () | 874807..874998 | - | 192 | WP_001287883.1 | DUF4222 domain-containing protein | - |
| JNN50_RS04175 () | 875719..875979 | + | 261 | Protein_820 | integrase core domain-containing protein | - |
| JNN50_RS04180 () | 876122..877867 | + | 1746 | WP_001564039.1 | AAA family ATPase | - |
| JNN50_RS04185 () | 878261..878701 | + | 441 | WP_001403216.1 | type VI secretion system ImpA family N-terminal domain-containing protein | - |
| JNN50_RS04190 () | 878742..879608 | + | 867 | Protein_823 | ImpA domain protein | - |
| JNN50_RS04195 () | 879725..880369 | + | 645 | WP_024196335.1 | hypothetical protein | - |
| JNN50_RS04200 () | 880510..881742 | + | 1233 | WP_001564037.1 | phosphoadenosine phosphosulfate reductase | - |
| JNN50_RS04205 () | 881727..882365 | + | 639 | WP_001564035.1 | ParB N-terminal domain-containing protein | - |
| JNN50_RS04210 () | 882444..882713 | + | 270 | WP_000226517.1 | PerC family transcriptional regulator | - |
| JNN50_RS04215 () | 882734..883378 | + | 645 | WP_106106617.1 | hypothetical protein | - |
| JNN50_RS04220 () | 883443..883766 | + | 324 | WP_001564033.1 | hypothetical protein | - |
| JNN50_RS04225 () | 883814..884605 | - | 792 | Protein_830 | ATP-dependent helicase | - |
| JNN50_RS04230 () | 884600..884989 | + | 390 | Protein_831 | IS3 family transposase | - |
| JNN50_RS04235 () | 885661..887169 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| JNN50_RS04240 () | 887259..887732 | + | 474 | Protein_833 | IS3 family transposase | - |
| JNN50_RS04245 () | 887930..888187 | - | 258 | Protein_834 | IS3 family transposase | - |
| JNN50_RS04250 () | 888257..888604 | - | 348 | WP_001564031.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| JNN50_RS04255 () | 889223..889916 | - | 694 | Protein_836 | IS1 family transposase | - |
| JNN50_RS04260 () | 890169..891638 | + | 1470 | WP_001331566.1 | basic amino acid/polyamine antiporter | - |
| JNN50_RS04265 () | 891743..894112 | + | 2370 | WP_000671170.1 | arginine decarboxylase | - |
| JNN50_RS04270 () | 894187..895686 | + | 1500 | WP_001331567.1 | basic amino acid/polyamine antiporter | - |
| JNN50_RS04275 () | 895829..896526 | + | 698 | Protein_840 | IS1 family transposase | - |
| JNN50_RS04280 () | 896993..897544 | - | 552 | WP_001447126.1 | MarR family transcriptional regulator | - |
| JNN50_RS04285 () | 897711..898502 | - | 792 | Protein_842 | IS3 family transposase | - |
| JNN50_RS04290 () | 898519..899216 | - | 698 | Protein_843 | IS1 family transposase | - |
| JNN50_RS04295 () | 899746..900789 | - | 1044 | WP_000147018.1 | hypothetical protein | - |
| JNN50_RS04300 () | 901045..902310 | - | 1266 | WP_001218869.1 | integrase arm-type DNA-binding domain-containing protein | - |
| JNN50_RS04310 () | 902689..903396 | - | 708 | WP_000234532.1 | DUF554 domain-containing protein | - |
| JNN50_RS04315 () | 903788..905923 | + | 2136 | WP_001564026.1 | ornithine decarboxylase | - |
| JNN50_RS04320 () | 905972..907228 | - | 1257 | WP_001049791.1 | nucleoside permease NupG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|