MGE detailed information
MGE type: Genomic_island MGE length: 38470 bp
Accession: NZ_CP068817 Location: 3985347..4023816 Organism: Escherichia coli strain RIVM_C028786 Replicon: chromosome
Accession: NZ_CP068817 Location: 3985347..4023816 Organism: Escherichia coli strain RIVM_C028786 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN59_RS19060 () | 3980712..3981170 | - | 459 | WP_001291991.1 | xanthine phosphoribosyltransferase | - |
| JNN59_RS19065 () | 3981431..3982888 | + | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| JNN59_RS19070 () | 3982945..3983559 | - | 615 | WP_000602124.1 | peptide chain release factor H | - |
| JNN59_RS19075 () | 3983556..3984695 | - | 1140 | WP_000521561.1 | RNA ligase RtcB family protein | - |
| JNN59_RS19080 () | 3984885..3985337 | - | 453 | WP_001059895.1 | GNAT family N-acetyltransferase | - |
| JNN59_RS19085 () | 3985347..3985745 | - | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| JNN59_RS19090 () | 3985748..3986041 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| JNN59_RS19095 () | 3986093..3987148 | - | 1056 | WP_001226168.1 | DNA polymerase IV | - |
| JNN59_RS19100 () | 3987219..3988004 | - | 786 | WP_000207578.1 | Chemotaxis protein LafU | VF |
| JNN59_RS19105 () | 3987976..3989688 | + | 1713 | Protein_3747 | Flagellar biosynthesis protein FlhA | VF |
| JNN59_RS19110 () | 3989716..3989925 | + | 210 | WP_071778446.1 | hypothetical protein | - |
| JNN59_RS19115 () | 3990008..3990505 | - | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| JNN59_RS19120 () | 3990681..3991430 | - | 750 | WP_000093934.1 | Murein DD-endopeptidase MepH | VF |
| JNN59_RS19125 () | 3991742..3992482 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| JNN59_RS19130 () | 3992453..3993220 | - | 768 | WP_001298195.1 | class II glutamine amidotransferase | - |
| JNN59_RS19135 () | 3993425..3994003 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| JNN59_RS19140 () | 3994243..3996687 | + | 2445 | WP_000973131.1 | Acyl-coenzyme A dehydrogenase | VF |
| JNN59_RS19145 () | 3996730..3997176 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| JNN59_RS19150 () | 3997357..3998127 | + | 771 | WP_001118042.1 | 2-oxoglutaramate amidase | - |
| JNN59_RS19155 () | 3998178..3998372 | - | 195 | Protein_3757 | transposase | - |
| JNN59_RS19160 () | 3998398..3998886 | - | 489 | WP_001298174.1 | integrating conjugative element protein | - |
| JNN59_RS19165 () | 3999243..3999940 | - | 698 | Protein_3759 | IS1 family transposase IS1R | Transposase |
| JNN59_RS19170 () | 4000159..4000956 | + | 798 | WP_015059991.1 | Beta-lactamase OXA-10 | ARG |
| JNN59_RS19175 () | 4001273..4002184 | - | 912 | WP_015586033.1 | HTH-type transcriptional regulator DmlR | VF |
| JNN59_RS19180 () | 4002487..4003695 | + | 1209 | WP_001206290.1 | IS4 family transposase IS10A | Transposase |
| JNN59_RS19185 () | 4003708..4003935 | + | 228 | Protein_3763 | CPBP family intramembrane metalloprotease | - |
| JNN59_RS19190 () | 4004027..4004284 | + | 258 | WP_004187429.1 | type II toxin-antitoxin system antitoxin PemI | - |
| JNN59_RS19195 () | 4004253..4004618 | + | 366 | WP_020277900.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| JNN59_RS19200 () | 4004711..4005145 | + | 435 | WP_004187425.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JNN59_RS19205 () | 4005133..4006398 | + | 1266 | WP_019725070.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| JNN59_RS19210 () | 4006521..4006730 | - | 210 | WP_004187413.1 | hypothetical protein | - |
| JNN59_RS19215 () | 4006733..4006951 | - | 219 | WP_004187411.1 | hypothetical protein | - |
| JNN59_RS19220 () | 4006996..4007679 | - | 684 | WP_015059994.1 | hypothetical protein | - |
| JNN59_RS19225 () | 4007676..4007948 | - | 273 | WP_015059995.1 | helix-turn-helix transcriptional regulator | - |
| JNN59_RS19230 () | 4007967..4009154 | - | 1188 | WP_015059996.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| JNN59_RS19235 () | 4009681..4010025 | + | 345 | WP_004187406.1 | hypothetical protein | - |
| JNN59_RS19240 () | 4010029..4010208 | + | 180 | WP_122019363.1 | hypothetical protein | - |
| JNN59_RS19245 () | 4010208..4010792 | + | 585 | WP_015059997.1 | hypothetical protein | - |
| JNN59_RS19250 () | 4011098..4011643 | - | 546 | WP_004187400.1 | hypothetical protein | - |
| JNN59_RS19255 () | 4011784..4012245 | + | 462 | WP_004187397.1 | hypothetical protein | - |
| JNN59_RS19260 () | 4012242..4012490 | + | 249 | WP_004187394.1 | helix-turn-helix domain-containing protein | - |
| JNN59_RS19265 () | 4012483..4013070 | + | 588 | WP_004187392.1 | restriction endonuclease | - |
| JNN59_RS19270 () | 4013067..4013552 | + | 486 | WP_004187390.1 | hypothetical protein | - |
| JNN59_RS19275 () | 4013549..4013797 | + | 249 | WP_004187387.1 | hypothetical protein | - |
| JNN59_RS19280 () | 4013816..4014556 | + | 741 | WP_004187383.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| JNN59_RS19285 () | 4014797..4015771 | + | 975 | WP_004187382.1 | plasmid segregation protein ParM | - |
| JNN59_RS19290 () | 4015774..4016217 | + | 444 | WP_004187380.1 | plasmid partitioning/stability family protein | - |
| JNN59_RS19295 () | 4016227..4016790 | + | 564 | WP_019725065.1 | Phospholipase D | VF |
| JNN59_RS19300 () | 4017169..4017414 | + | 246 | WP_019725064.1 | hypothetical protein | - |
| JNN59_RS19305 () | 4017407..4017886 | + | 480 | WP_004187375.1 | hypothetical protein | - |
| JNN59_RS19310 () | 4017915..4018325 | + | 411 | WP_004206907.1 | hypothetical protein | - |
| JNN59_RS19315 () | 4018443..4018706 | + | 264 | WP_004187372.1 | hypothetical protein | - |
| JNN59_RS19320 () | 4018728..4019090 | + | 363 | WP_004187371.1 | DUF3085 domain-containing protein | - |
| JNN59_RS19325 () | 4019212..4019661 | + | 450 | WP_004187369.1 | Mov34/MPN/PAD-1 family protein | - |
| JNN59_RS19330 () | 4019706..4019972 | + | 267 | WP_004187367.1 | helix-turn-helix domain-containing protein | - |
| JNN59_RS19335 () | 4020036..4020338 | + | 303 | Protein_3793 | DGQHR domain-containing protein | - |
| JNN59_RS19340 () | 4020353..4021050 | - | 698 | Protein_3794 | IS1 family transposase IS1R | Transposase |
| JNN59_RS19345 () | 4021107..4021592 | - | 486 | Protein_3795 | DUF2169 domain-containing protein | - |
| JNN59_RS19350 () | 4021699..4023681 | - | 1983 | Protein_3796 | Actin cross-linking toxin VgrG1 | VF |
| JNN59_RS19355 () | 4023902..4024420 | - | 519 | WP_001142963.1 | Hcp family type VI secretion system effector | - |
| JNN59_RS19360 () | 4025126..4025629 | + | 504 | WP_000041480.1 | type VI secretion system contractile sheath small subunit | - |
| JNN59_RS19365 () | 4025652..4027136 | + | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| JNN59_RS19370 () | 4027141..4027566 | + | 426 | WP_001189667.1 | type VI secretion system baseplate subunit TssE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|