MGE detailed information
MGE type: Genomic_island MGE length: 42227 bp
Accession: NZ_CP068815 Location: 3953536..3995762 Organism: Escherichia coli strain RIVM_C028620 Replicon: chromosome
Accession: NZ_CP068815 Location: 3953536..3995762 Organism: Escherichia coli strain RIVM_C028620 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN49_RS18830 () | 3948901..3949359 | - | 459 | WP_001291991.1 | xanthine phosphoribosyltransferase | - |
| JNN49_RS18835 () | 3949620..3951077 | + | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| JNN49_RS18840 () | 3951134..3951748 | - | 615 | WP_000602124.1 | peptide chain release factor H | - |
| JNN49_RS18845 () | 3951745..3952884 | - | 1140 | WP_000521561.1 | RNA ligase RtcB family protein | - |
| JNN49_RS18850 () | 3953074..3953526 | - | 453 | WP_001059895.1 | GNAT family N-acetyltransferase | - |
| JNN49_RS18855 () | 3953536..3953934 | - | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| JNN49_RS18860 () | 3953937..3954230 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| JNN49_RS18865 () | 3954282..3955337 | - | 1056 | WP_001226168.1 | DNA polymerase IV | - |
| JNN49_RS18870 () | 3955408..3956193 | - | 786 | WP_000207578.1 | Chemotaxis protein LafU | VF |
| JNN49_RS18875 () | 3956165..3957877 | + | 1713 | Protein_3701 | Flagellar biosynthesis protein FlhA | VF |
| JNN49_RS18880 () | 3958197..3958694 | - | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| JNN49_RS18885 () | 3958870..3959619 | - | 750 | WP_000093934.1 | Murein DD-endopeptidase MepH | VF |
| JNN49_RS18890 () | 3959931..3960671 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| JNN49_RS18895 () | 3960642..3961409 | - | 768 | WP_001298195.1 | class II glutamine amidotransferase | - |
| JNN49_RS18900 () | 3961614..3962192 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| JNN49_RS18905 () | 3962432..3964876 | + | 2445 | WP_000973131.1 | Acyl-coenzyme A dehydrogenase | VF |
| JNN49_RS18910 () | 3964919..3965365 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| JNN49_RS18915 () | 3965546..3966316 | + | 771 | WP_001118042.1 | 2-oxoglutaramate amidase | - |
| JNN49_RS18920 () | 3966367..3966561 | - | 195 | Protein_3710 | transposase | - |
| JNN49_RS18925 () | 3966587..3967075 | - | 489 | WP_001298174.1 | integrating conjugative element protein | - |
| JNN49_RS18930 () | 3967432..3968129 | - | 698 | Protein_3712 | IS1 family transposase IS1R | Transposase |
| JNN49_RS18935 () | 3968348..3969145 | + | 798 | WP_015059991.1 | Beta-lactamase OXA-10 | ARG |
| JNN49_RS18940 () | 3969447..3970358 | - | 912 | WP_015586033.1 | HTH-type transcriptional regulator DmlR | VF |
| JNN49_RS18945 () | 3970661..3971869 | + | 1209 | WP_001206290.1 | IS4 family transposase IS10A | Transposase |
| JNN49_RS18950 () | 3971882..3972109 | + | 228 | Protein_3716 | CPBP family intramembrane metalloprotease | - |
| JNN49_RS18955 () | 3972201..3972458 | + | 258 | WP_004187429.1 | type II toxin-antitoxin system antitoxin PemI | - |
| JNN49_RS18960 () | 3972427..3972792 | + | 366 | WP_020277900.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| JNN49_RS18965 () | 3972885..3973319 | + | 435 | WP_004187425.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JNN49_RS18970 () | 3973307..3974572 | + | 1266 | WP_019725070.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| JNN49_RS18975 () | 3974695..3974904 | - | 210 | WP_004187413.1 | hypothetical protein | - |
| JNN49_RS18980 () | 3974907..3975125 | - | 219 | WP_004187411.1 | hypothetical protein | - |
| JNN49_RS18985 () | 3975170..3975853 | - | 684 | WP_015059994.1 | hypothetical protein | - |
| JNN49_RS18990 () | 3975850..3976122 | - | 273 | WP_015059995.1 | helix-turn-helix transcriptional regulator | - |
| JNN49_RS18995 () | 3976141..3977328 | - | 1188 | WP_015059996.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| JNN49_RS19000 () | 3977855..3978199 | + | 345 | WP_004187406.1 | hypothetical protein | - |
| JNN49_RS19005 () | 3978224..3978382 | + | 159 | WP_004187405.1 | hypothetical protein | - |
| JNN49_RS19010 () | 3978382..3978966 | + | 585 | WP_015059997.1 | hypothetical protein | - |
| JNN49_RS19015 () | 3979272..3979817 | - | 546 | WP_004187400.1 | hypothetical protein | - |
| JNN49_RS19020 () | 3979958..3980419 | + | 462 | WP_004187397.1 | hypothetical protein | - |
| JNN49_RS19025 () | 3980416..3980664 | + | 249 | WP_004187394.1 | helix-turn-helix domain-containing protein | - |
| JNN49_RS19030 () | 3980657..3981244 | + | 588 | WP_004187392.1 | restriction endonuclease | - |
| JNN49_RS19035 () | 3981241..3981726 | + | 486 | WP_004187390.1 | hypothetical protein | - |
| JNN49_RS19040 () | 3981723..3981971 | + | 249 | WP_004187387.1 | hypothetical protein | - |
| JNN49_RS19045 () | 3981990..3982730 | + | 741 | WP_004187383.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| JNN49_RS19050 () | 3982971..3983945 | + | 975 | WP_004187382.1 | plasmid segregation protein ParM | - |
| JNN49_RS19055 () | 3983948..3984391 | + | 444 | WP_004187380.1 | plasmid partitioning/stability family protein | - |
| JNN49_RS19060 () | 3984401..3984964 | + | 564 | WP_019725065.1 | Phospholipase D | VF |
| JNN49_RS19065 () | 3985343..3985588 | + | 246 | WP_019725064.1 | hypothetical protein | - |
| JNN49_RS19070 () | 3985581..3986060 | + | 480 | WP_004187375.1 | hypothetical protein | - |
| JNN49_RS19075 () | 3986089..3986499 | + | 411 | WP_004206907.1 | hypothetical protein | - |
| JNN49_RS19080 () | 3986617..3986880 | + | 264 | WP_004187372.1 | hypothetical protein | - |
| JNN49_RS19085 () | 3986902..3987264 | + | 363 | WP_004187371.1 | DUF3085 domain-containing protein | - |
| JNN49_RS19090 () | 3987386..3987835 | + | 450 | WP_004187369.1 | Mov34/MPN/PAD-1 family protein | - |
| JNN49_RS19095 () | 3987880..3988146 | + | 267 | WP_004187367.1 | helix-turn-helix domain-containing protein | - |
| JNN49_RS19100 () | 3988210..3988512 | + | 303 | Protein_3746 | DGQHR domain-containing protein | - |
| JNN49_RS19105 () | 3988527..3989224 | - | 698 | Protein_3747 | IS1 family transposase IS1R | Transposase |
| JNN49_RS19110 () | 3989281..3989544 | - | 264 | Protein_3748 | hypothetical protein | - |
| JNN49_RS19115 () | 3989773..3990537 | - | 765 | Protein_3749 | ISAs1 family transposase | - |
| JNN49_RS19120 () | 3990795..3991085 | - | 291 | WP_000513317.1 | hypothetical protein | - |
| JNN49_RS19125 () | 3991060..3992499 | - | 1440 | WP_000528851.1 | DUF4150 domain-containing protein | - |
| JNN49_RS19130 () | 3992492..3993538 | - | 1047 | WP_000571853.1 | DUF2169 domain-containing protein | - |
| JNN49_RS19135 () | 3993645..3995627 | - | 1983 | Protein_3753 | Actin cross-linking toxin VgrG1 | VF |
| JNN49_RS19140 () | 3995848..3996366 | - | 519 | WP_001142963.1 | Hcp family type VI secretion system effector | - |
| JNN49_RS19145 () | 3997072..3997575 | + | 504 | WP_000041480.1 | type VI secretion system contractile sheath small subunit | - |
| JNN49_RS19150 () | 3997598..3999082 | + | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| JNN49_RS19155 () | 3999087..3999512 | + | 426 | WP_001189667.1 | type VI secretion system baseplate subunit TssE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|