MGE detailed information
MGE type: Genomic_island MGE length: 76674 bp
Accession: NZ_CP068815 Location: 3822755..3899428 Organism: Escherichia coli strain RIVM_C028620 Replicon: chromosome
Accession: NZ_CP068815 Location: 3822755..3899428 Organism: Escherichia coli strain RIVM_C028620 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN49_RS18230 () | 3817912..3818499 | + | 588 | WP_001298544.1 | transcriptional regulator BetI | - |
| JNN49_RS18235 () | 3818513..3819985 | + | 1473 | WP_000089053.1 | betaine-aldehyde dehydrogenase | - |
| JNN49_RS18240 () | 3819999..3821669 | + | 1671 | WP_001159127.1 | choline dehydrogenase | - |
| JNN49_RS18245 () | 3822755..3823318 | + | 564 | WP_001335180.1 | Tyrosine recombinase XerD | VF |
| JNN49_RS18250 () | 3823648..3824442 | + | 795 | WP_001335181.1 | LuxR family transcriptional regulator HyxR | - |
| JNN49_RS18255 () | 3824596..3825357 | + | 762 | WP_001213042.1 | protein HyxA | - |
| JNN49_RS18260 () | 3825399..3826481 | + | 1083 | Protein_3580 | adhesin | - |
| JNN49_RS18265 () | 3826503..3827696 | + | 1194 | WP_071787751.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| JNN49_RS18270 () | 3827880..3828548 | + | 669 | WP_001005267.1 | membrane protein | - |
| JNN49_RS18275 () | 3828791..3829486 | - | 696 | WP_001298555.1 | lactate utilization protein C | - |
| JNN49_RS18280 () | 3829479..3830906 | - | 1428 | WP_000023923.1 | iron-sulfur cluster-binding protein | - |
| JNN49_RS18285 () | 3830917..3831636 | - | 720 | WP_001102123.1 | (Fe-S)-binding protein | - |
| JNN49_RS18290 () | 3832163..3833017 | - | 855 | WP_000339603.1 | DNA-binding transcriptional regulator RclR | - |
| JNN49_RS18295 () | 3833244..3834569 | + | 1326 | WP_001046335.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| JNN49_RS18300 () | 3834678..3834914 | + | 237 | WP_000474088.1 | DUF1471 domain-containing protein | - |
| JNN49_RS18305 () | 3834926..3835519 | + | 594 | WP_001298546.1 | reactive chlorine species resistance protein RclC | - |
| JNN49_RS18310 () | 3835679..3836548 | - | 870 | WP_001295799.1 | aldo/keto reductase | - |
| JNN49_RS18315 () | 3836796..3837653 | + | 858 | WP_000620997.1 | Right origin-binding protein | VF |
| JNN49_RS18320 () | 3837778..3842025 | - | 4248 | WP_000092548.1 | Invasin | VF |
| JNN49_RS18325 () | 3842591..3843442 | + | 852 | WP_001174452.1 | aldo/keto reductase | - |
| JNN49_RS18330 () | 3843469..3844458 | + | 990 | WP_001172293.1 | aldo/keto reductase | - |
| JNN49_RS18335 () | 3844489..3845382 | - | 894 | WP_000910711.1 | HTH-type transcriptional regulator PgrR | VF |
| JNN49_RS18340 () | 3845582..3846508 | - | 927 | WP_001304867.1 | HTH-type transcriptional regulator PgrR | VF |
| JNN49_RS18345 () | 3846665..3847585 | + | 921 | WP_000860032.1 | alpha/beta hydrolase | - |
| JNN49_RS18350 () | 3847757..3848899 | + | 1143 | WP_000182341.1 | NADH-dependent flavin oxidoreductase | - |
| JNN49_RS18355 () | 3849372..3849473 | + | 102 | WP_000662258.1 | hypothetical protein | - |
| JNN49_RS18360 () | 3849838..3850101 | + | 264 | WP_000803998.1 | type B 50S ribosomal protein L31 | - |
| JNN49_RS18365 () | 3850101..3850241 | + | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| JNN49_RS18370 () | 3850311..3850501 | - | 191 | Protein_3602 | hypothetical protein | - |
| JNN49_RS18375 () | 3851325..3851867 | + | 543 | WP_000389022.1 | HTH-type transcriptional regulator EcpR | VF |
| JNN49_RS18380 () | 3851958..3852530 | + | 573 | WP_042856856.1 | Common pilus major fimbrillin subunit EcpA | VF |
| JNN49_RS18385 () | 3852587..3853255 | + | 669 | WP_000716404.1 | putative fimbrial chaperone EcpB | VF |
| JNN49_RS18390 () | 3853281..3855806 | + | 2526 | WP_001131116.1 | putative outer membrane usher protein EcpC | VF |
| JNN49_RS18395 () | 3855796..3857439 | + | 1644 | WP_001265646.1 | Fimbria adhesin EcpD | VF |
| JNN49_RS18400 () | 3857408..3858118 | + | 711 | WP_001295798.1 | putative fimbrial chaperone EcpE | VF |
| JNN49_RS18405 () | 3858425..3858754 | + | 330 | WP_001335188.1 | YkgJ family cysteine cluster protein | - |
| JNN49_RS18410 () | 3858766..3858929 | - | 164 | Protein_3610 | tail fiber assembly protein | - |
| JNN49_RS18415 () | 3859003..3859617 | - | 615 | WP_001019923.1 | YagU family protein | - |
| JNN49_RS18420 () | 3859832..3860017 | - | 186 | WP_000146243.1 | hypothetical protein | - |
| JNN49_RS18425 () | 3860066..3860224 | + | 159 | Protein_3613 | integrase | - |
| JNN49_RS18430 () | 3860441..3861134 | - | 694 | Protein_3614 | IS1 family transposase | - |
| JNN49_RS18435 () | 3861727..3865857 | + | 4131 | WP_001034003.1 | Hemoglobin-binding protease hbp autotransporter | VF |
| JNN49_RS18440 () | 3866013..3866507 | + | 495 | WP_001059463.1 | Transcriptional repressor MprA | VF |
| JNN49_RS18445 () | 3866942..3867280 | - | 339 | WP_000772639.1 | Arm DNA-binding domain-containing protein | - |
| JNN49_RS18450 () | 3867646..3868965 | + | 1320 | WP_000144686.1 | Prophage integrase IntA ; Integrase | Integrase |
| JNN49_RS18455 () | 3869058..3869912 | - | 855 | WP_024174313.1 | DUF4942 domain-containing protein | - |
| JNN49_RS18460 () | 3869997..3870194 | - | 198 | WP_000839247.1 | DUF957 domain-containing protein | - |
| JNN49_RS18465 () | 3870206..3870694 | - | 489 | WP_000761726.1 | hypothetical protein | - |
| JNN49_RS18470 () | 3870691..3871068 | - | 378 | WP_000854700.1 | TA system toxin CbtA family protein | Toxin Detail |
| JNN49_RS18475 () | 3871158..3871526 | - | 369 | WP_001278232.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin Detail |
| JNN49_RS18480 () | 3871689..3871910 | - | 222 | WP_000692353.1 | DUF987 domain-containing protein | - |
| JNN49_RS18485 () | 3871979..3872455 | - | 477 | WP_001186199.1 | RadC family protein | - |
| JNN49_RS18490 () | 3872471..3872956 | - | 486 | WP_000213723.1 | antirestriction protein | - |
| JNN49_RS18495 () | 3873048..3873866 | - | 819 | WP_001234709.1 | DUF945 domain-containing protein | - |
| JNN49_RS18500 () | 3874193..3877315 | - | 3123 | WP_202847272.1 | autotransporter adhesin Ag43 | - |
| JNN49_RS18505 () | 3877649..3878521 | - | 873 | WP_021538680.1 | GTPase family protein | - |
| JNN49_RS18510 () | 3878852..3879034 | + | 183 | WP_000282123.1 | hypothetical protein | - |
| JNN49_RS18515 () | 3879335..3879697 | - | 363 | WP_000229734.1 | IS66 family transposase ISEc23 | Transposase |
| JNN49_RS18520 () | 3880084..3881394 | + | 1311 | WP_000016482.1 | cadaverine/lysine antiporter | - |
| JNN49_RS18525 () | 3881425..3883551 | + | 2127 | WP_001092279.1 | lysine decarboxylase LdcC | - |
| JNN49_RS18530 () | 3883755..3884465 | + | 711 | WP_000215693.1 | helix-turn-helix domain-containing protein | - |
| JNN49_RS18535 () | 3884759..3886255 | + | 1497 | WP_001298165.1 | lysine--tRNA ligase | - |
| JNN49_RS18540 () | 3886302..3887189 | + | 888 | WP_001178453.1 | HTH-type transcriptional regulator ArgP | - |
| JNN49_RS18545 () | 3887976..3888338 | + | 363 | WP_000239761.1 | IS66 family transposase IS682 | Transposase |
| JNN49_RS18550 () | 3888335..3888682 | + | 348 | WP_000624593.1 | IS66 family transposase ISCro1 | Transposase |
| JNN49_RS18555 () | 3888702..3889301 | + | 600 | Protein_3639 | IS66 family transposase IS679 | Transposase |
| JNN49_RS18560 () | 3889370..3890152 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| JNN49_RS18565 () | 3890149..3890721 | - | 573 | Protein_3641 | IS21 family transposase IS100kyp | Transposase |
| JNN49_RS18570 () | 3890708..3890850 | - | 143 | Protein_3642 | IS110 family transposase | - |
| JNN49_RS18575 () | 3890911..3891096 | + | 186 | Protein_3643 | IS66 family transposase IS682 | Transposase |
| JNN49_RS18580 () | 3891203..3892402 | - | 1200 | WP_001298139.1 | GTP-binding protein | - |
| JNN49_RS18585 () | 3892666..3893457 | - | 792 | WP_000977398.1 | DUF4198 domain-containing protein | - |
| JNN49_RS18590 () | 3893476..3895446 | - | 1971 | WP_001445605.1 | Vitamin B12 transporter BtuB | VF |
| JNN49_RS18595 () | 3895792..3897155 | + | 1364 | Protein_3647 | IS4 family transposase ISEc13 | Transposase |
| JNN49_RS18605 () | 3899045..3899428 | + | 384 | Protein_3648 | IS4 family transposase IS4 | Transposase |
| JNN49_RS18610 () | 3899439..3899738 | - | 300 | WP_000805229.1 | hypothetical protein | - |
| JNN49_RS18615 () | 3900276..3901391 | + | 1116 | WP_001298145.1 | salmochelin biosynthesis C-glycosyltransferase IroB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|