MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 150046 bp
Accession: NZ_CP068810 Location: 788631..938676 Organism: Escherichia coli strain RIVM_C028536 Replicon: chromosome
Accession: NZ_CP068810 Location: 788631..938676 Organism: Escherichia coli strain RIVM_C028536 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN60_RS03730 () | 784184..784948 | - | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| JNN60_RS03735 () | 785199..786698 | + | 1500 | WP_000026121.1 | glycolate oxidase subunit GlcD | - |
| JNN60_RS03740 () | 786698..787750 | + | 1053 | WP_060579069.1 | glycolate oxidase subunit GlcE | - |
| JNN60_RS03745 () | 787761..788984 | + | 1224 | WP_060579068.1 | glycolate oxidase subunit GlcF | - |
| JNN60_RS03750 () | 788989..789393 | + | 405 | WP_001296404.1 | heme-binding protein | - |
| JNN60_RS03755 () | 789415..791586 | + | 2172 | WP_060579067.1 | malate synthase G | - |
| JNN60_RS03760 () | 791941..793623 | + | 1683 | WP_000259302.1 | glycolate permease GlcA | - |
| JNN60_RS03765 () | 794109..798668 | + | 4560 | WP_029701459.1 | hypothetical protein | VF |
| JNN60_RS03770 () | 798832..799641 | + | 810 | WP_000895873.1 | Leader peptidase PppA | VF |
| JNN60_RS03775 () | 799707..800117 | + | 411 | WP_001305972.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| JNN60_RS03780 () | 800135..801094 | + | 960 | WP_014639304.1 | Type II secretion system protein C | VF |
| JNN60_RS03785 () | 801124..803184 | + | 2061 | WP_029701460.1 | Type II secretion system protein D | VF |
| JNN60_RS03790 () | 803184..804677 | + | 1494 | WP_000249329.1 | Type II secretion system protein E | VF |
| JNN60_RS03795 () | 804677..805900 | + | 1224 | WP_001173416.1 | Type II secretion system protein F | VF |
| JNN60_RS03800 () | 805917..806372 | + | 456 | WP_001087296.1 | Type II secretion system protein G | VF |
| JNN60_RS03805 () | 806376..806939 | + | 564 | WP_001115147.1 | Type II secretion system protein H | VF |
| JNN60_RS03810 () | 806936..807307 | + | 372 | WP_000820109.1 | Type II secretion system protein I | VF |
| JNN60_RS03815 () | 807304..807909 | + | 606 | WP_023147221.1 | Type II secretion system protein J | VF |
| JNN60_RS03820 () | 807906..808883 | + | 978 | WP_000633200.1 | Putative type II secretion system protein K | VF |
| JNN60_RS03825 () | 808880..810058 | + | 1179 | WP_000094981.1 | Type II secretion system protein L | VF |
| JNN60_RS03830 () | 810060..810596 | + | 537 | WP_000942810.1 | Type II secretion system protein M | VF |
| JNN60_RS03835 () | 811657..812433 | + | 777 | WP_000124290.1 | Polysialic acid transport protein KpsM | VF |
| JNN60_RS03840 () | 812430..813104 | + | 675 | WP_029701466.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| JNN60_RS03845 () | 813274..813669 | + | 396 | WP_001542355.1 | Glycerol-3-phosphate cytidylyltransferase | VF |
| JNN60_RS03850 () | 815026..816209 | + | 1184 | Protein_755 | CDP-glycerol glycerophosphotransferase family protein | - |
| JNN60_RS03855 () | 816247..817392 | + | 1146 | Protein_756 | hypothetical protein | - |
| JNN60_RS03860 () | 817803..818771 | + | 969 | WP_029701470.1 | hypothetical protein | - |
| JNN60_RS03865 () | 819033..820265 | - | 1233 | WP_029701471.1 | hypothetical protein | VF |
| JNN60_RS03870 () | 820300..822327 | - | 2028 | WP_029701472.1 | hypothetical protein | VF |
| JNN60_RS03875 () | 822324..823064 | - | 741 | WP_001604840.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | VF |
| JNN60_RS03880 () | 823074..824750 | - | 1677 | WP_001564067.1 | Polysialic acid transport protein KpsD | VF |
| JNN60_RS03885 () | 824774..825922 | - | 1149 | WP_000905920.1 | hypothetical protein | VF |
| JNN60_RS03890 () | 825994..826977 | - | 984 | WP_001296394.1 | Arabinose 5-phosphate isomerase KpsF | VF |
| JNN60_RS03895 () | 827787..827957 | - | 171 | Protein_764 | IS110 family transposase | - |
| JNN60_RS03900 () | 828300..829142 | - | 843 | Protein_765 | DUF4942 domain-containing protein | - |
| JNN60_RS03905 () | 829227..829421 | - | 195 | WP_024181941.1 | DUF957 domain-containing protein | - |
| JNN60_RS03910 () | 829500..829649 | - | 150 | Protein_767 | hypothetical protein | - |
| JNN60_RS03915 () | 829646..830023 | - | 378 | WP_001564063.1 | TA system toxin CbtA family protein | Toxin Detail |
| JNN60_RS03920 () | 830113..830481 | - | 369 | WP_021553056.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| JNN60_RS03925 () | 830644..830865 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| JNN60_RS03930 () | 830930..831406 | - | 477 | WP_021553055.1 | RadC family protein | - |
| JNN60_RS03935 () | 831422..831901 | - | 480 | WP_001564060.1 | antirestriction protein | - |
| JNN60_RS03940 () | 832167..832985 | - | 819 | WP_001564059.1 | DUF945 domain-containing protein | - |
| JNN60_RS03945 () | 833075..833308 | - | 234 | WP_001278293.1 | DUF905 family protein | - |
| JNN60_RS03950 () | 833314..833991 | - | 678 | WP_001564058.1 | hypothetical protein | - |
| JNN60_RS03955 () | 834142..834822 | - | 681 | WP_001278649.1 | WYL domain-containing protein | - |
| JNN60_RS03960 () | 835025..835909 | - | 885 | WP_001564055.1 | 50S ribosome-binding GTPase | - |
| JNN60_RS03965 () | 836010..837233 | + | 1224 | WP_001107219.1 | hypothetical protein | - |
| JNN60_RS03970 () | 838396..838926 | - | 531 | WP_000778605.1 | hypothetical protein | - |
| JNN60_RS03975 () | 839596..840327 | + | 732 | WP_001075495.1 | inovirus Gp2 family protein | - |
| JNN60_RS03980 () | 840848..841300 | + | 453 | WP_000558152.1 | N-acetyltransferase | - |
| JNN60_RS03985 () | 841836..842771 | + | 936 | WP_000332862.1 | pseudouridine kinase | - |
| JNN60_RS03990 () | 842764..843699 | + | 936 | WP_001290195.1 | pseudouridine-5'-phosphate glycosidase | - |
| JNN60_RS03995 () | 843783..845033 | + | 1251 | WP_001328687.1 | NupC/NupG family nucleoside CNT transporter | - |
| JNN60_RS04000 () | 845052..846146 | - | 1095 | WP_000370278.1 | sugar kinase | - |
| JNN60_RS04005 () | 847447..848013 | + | 567 | WP_001126810.1 | inovirus-type Gp2 protein | - |
| JNN60_RS04010 () | 848271..848846 | + | 576 | WP_001564054.1 | hypothetical protein | - |
| JNN60_RS04015 () | 848915..849148 | + | 234 | WP_000958492.1 | AlpA family transcriptional regulator | - |
| JNN60_RS04020 () | 849160..849385 | + | 226 | Protein_789 | hypothetical protein | - |
| JNN60_RS04025 () | 849447..849713 | - | 267 | Protein_790 | IS3 family transposase IS2 | Transposase |
| JNN60_RS04030 () | 849804..850961 | + | 1158 | Protein_791 | Multidrug resistance protein MexB | VF |
| JNN60_RS04035 () | 851082..851732 | + | 651 | WP_001564048.1 | TetR/AcrR family transcriptional regulator | - |
| JNN60_RS04040 () | 851755..852048 | + | 294 | Protein_793 | helix-turn-helix domain-containing protein | - |
| JNN60_RS04045 () | 852405..852950 | - | 546 | WP_001564047.1 | propanediol utilization system shell hexameric protein GrpS | - |
| JNN60_RS04050 () | 852995..854146 | - | 1152 | WP_001001003.1 | propanediol utilization system methionine adenosyltransferase GrpR | - |
| JNN60_RS04055 () | 854275..855330 | - | 1056 | WP_001564046.1 | HTH-type transcriptional activator Btr | VF |
| JNN60_RS04060 () | 855347..856576 | - | 1230 | WP_000792585.1 | propanediol utilization sensor histidine kinase GrpP | - |
| JNN60_RS04065 () | 857192..857785 | - | 594 | Protein_798 | maturase | - |
| JNN60_RS04070 () | 857785..858154 | - | 370 | Protein_799 | reverse transcriptase/maturase | - |
| JNN60_RS04075 () | 858766..859671 | - | 906 | WP_001564044.1 | propanediol utilization system permease GrpO | - |
| JNN60_RS04080 () | 859808..860725 | - | 918 | WP_001564043.1 | glycyl radical diol dehydratase-activating enzyme GrpN | - |
| JNN60_RS04085 () | 860834..863386 | - | 2553 | WP_000890295.1 | glycyl radical diol dehydratase GrpM | - |
| JNN60_RS04090 () | 863435..864010 | - | 576 | WP_000722279.1 | propanediol utilization system protease GrpL | - |
| JNN60_RS04095 () | 864021..864320 | - | 300 | WP_000746009.1 | propanediol utilization system shell hexameric protein GrpK | - |
| JNN60_RS04100 () | 864344..865861 | - | 1518 | WP_000997839.1 | Aldehyde-alcohol dehydrogenase | VF |
| JNN60_RS04105 () | 865922..866707 | - | 786 | WP_001205499.1 | propanediol utilization microcompartment protein GrpI | - |
| JNN60_RS04110 () | 866729..867010 | - | 282 | WP_001301171.1 | propanediol utilization system shell hexameric protein GrpH | - |
| JNN60_RS04115 () | 867295..868491 | - | 1197 | WP_001362987.1 | propanediol utilization system propionate kinase GrpG | - |
| JNN60_RS04120 () | 868520..869017 | - | 498 | WP_001564042.1 | propanediol utilization system heme-binding protein GrpF | - |
| JNN60_RS04125 () | 869045..869314 | - | 270 | WP_001564041.1 | propanediol utilization microcompartment vertex protein GrpE | - |
| JNN60_RS04130 () | 869326..870030 | - | 705 | WP_000370214.1 | propanediol utilization system flavoprotein GrpD | - |
| JNN60_RS04135 () | 870035..870793 | - | 759 | WP_001332070.1 | propanediol utilization system chaperone GrpC | - |
| JNN60_RS04140 () | 870848..871534 | - | 687 | WP_001109982.1 | propanediol utilization system phosphotransacylase GrpB | - |
| JNN60_RS04145 () | 871674..872792 | - | 1119 | WP_000135343.1 | NAD-dependent methanol dehydrogenase | VF |
| JNN60_RS04150 () | 873149..873649 | + | 501 | Protein_815 | DNA-binding protein | - |
| JNN60_RS04155 () | 873745..873978 | + | 234 | WP_000124185.1 | hypothetical protein | - |
| JNN60_RS04160 () | 874031..874222 | - | 192 | WP_001287883.1 | DUF4222 domain-containing protein | - |
| JNN60_RS04165 () | 874943..875203 | + | 261 | Protein_818 | IS3 family transposase ISLad1 | Transposase |
| JNN60_RS04170 () | 875346..877091 | + | 1746 | WP_001564039.1 | AAA family ATPase | - |
| JNN60_RS04175 () | 877485..877925 | + | 441 | WP_001403216.1 | hypothetical protein | VF |
| JNN60_RS04180 () | 877966..878832 | + | 867 | Protein_821 | ImpA domain protein | - |
| JNN60_RS04185 () | 878949..879593 | + | 645 | WP_024196335.1 | hypothetical protein | - |
| JNN60_RS04190 () | 879734..880966 | + | 1233 | WP_001564037.1 | phosphoadenosine phosphosulfate reductase | - |
| JNN60_RS04195 () | 880951..881589 | + | 639 | WP_001564035.1 | ParB N-terminal domain-containing protein | - |
| JNN60_RS04200 () | 881668..881937 | + | 270 | WP_000226517.1 | PerC family transcriptional regulator | - |
| JNN60_RS04205 () | 881958..882602 | + | 645 | WP_106106617.1 | hypothetical protein | - |
| JNN60_RS04210 () | 882667..882990 | + | 324 | WP_001564033.1 | hypothetical protein | - |
| JNN60_RS04215 () | 883038..883829 | - | 792 | Protein_828 | ATP-dependent helicase | - |
| JNN60_RS04220 () | 883824..884213 | + | 390 | Protein_829 | IS3 family transposase | - |
| JNN60_RS04225 () | 884885..886393 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| JNN60_RS04230 () | 886483..886956 | + | 474 | Protein_831 | IS3 family transposase IS629 | Transposase |
| JNN60_RS04235 () | 887154..887411 | - | 258 | Protein_832 | IS3 family transposase IS911 | Transposase |
| JNN60_RS04240 () | 887481..887828 | - | 348 | WP_001564031.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| JNN60_RS04245 () | 888447..889140 | - | 694 | Protein_834 | IS1 family transposase IS1N | Transposase |
| JNN60_RS04250 () | 889393..890862 | + | 1470 | WP_001331566.1 | basic amino acid/polyamine antiporter | - |
| JNN60_RS04255 () | 890967..893336 | + | 2370 | WP_000671170.1 | arginine decarboxylase | - |
| JNN60_RS04260 () | 893411..894910 | + | 1500 | WP_001331567.1 | basic amino acid/polyamine antiporter | - |
| JNN60_RS04265 () | 895053..895750 | + | 698 | Protein_838 | IS1 family transposase IS1S | Transposase |
| JNN60_RS04270 () | 896217..896768 | - | 552 | WP_001447126.1 | Transcriptional repressor MprA | VF |
| JNN60_RS04275 () | 896935..897726 | - | 792 | Protein_840 | IS3 family transposase | - |
| JNN60_RS04280 () | 897743..898440 | - | 698 | Protein_841 | IS1 family transposase IS1A | Transposase |
| JNN60_RS04285 () | 898970..900013 | - | 1044 | WP_000147018.1 | hypothetical protein | - |
| JNN60_RS04290 () | 900269..901534 | - | 1266 | WP_001218869.1 | Prophage integrase IntS ; Integrase | Integrase |
| JNN60_RS04295 () | 901998..902324 | - | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JNN60_RS04300 () | 902321..902584 | - | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| JNN60_RS04305 () | 902656..903522 | - | 867 | WP_001280433.1 | DUF4942 domain-containing protein | - |
| JNN60_RS04310 () | 903607..903804 | - | 198 | WP_000839291.1 | DUF957 domain-containing protein | - |
| JNN60_RS04315 () | 903816..904304 | - | 489 | WP_000761676.1 | hypothetical protein | - |
| JNN60_RS04320 () | 904301..904678 | - | 378 | WP_000854735.1 | TA system toxin CbtA family protein | Toxin Detail |
| JNN60_RS04325 () | 904725..905099 | - | 375 | WP_001285415.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| JNN60_RS04330 () | 905179..905400 | - | 222 | WP_000692309.1 | DUF987 domain-containing protein | - |
| JNN60_RS04335 () | 905463..905939 | - | 477 | WP_001366855.1 | RadC family protein | - |
| JNN60_RS04340 () | 905955..906434 | - | 480 | WP_000844100.1 | antirestriction protein | - |
| JNN60_RS04345 () | 906516..907334 | - | 819 | WP_001234629.1 | DUF945 domain-containing protein | - |
| JNN60_RS04350 () | 907433..907666 | - | 234 | WP_001278287.1 | DUF905 family protein | - |
| JNN60_RS04355 () | 907672..908349 | - | 678 | WP_042104028.1 | hypothetical protein | - |
| JNN60_RS04360 () | 908497..909177 | - | 681 | WP_001593697.1 | WYL domain-containing protein | - |
| JNN60_RS04365 () | 909380..910264 | - | 885 | WP_000010402.1 | 50S ribosome-binding GTPase | - |
| JNN60_RS04370 () | 910449..911579 | + | 1131 | WP_137561147.1 | hypothetical protein | - |
| JNN60_RS04375 () | 912787..913035 | - | 249 | WP_157917030.1 | hypothetical protein | - |
| JNN60_RS04380 () | 913141..913872 | + | 732 | WP_039023502.1 | inovirus Gp2 family protein | - |
| JNN60_RS04385 () | 914092..914241 | - | 150 | WP_001385640.1 | hypothetical protein | - |
| JNN60_RS04390 () | 914256..914828 | + | 573 | WP_000991606.1 | hypothetical protein | - |
| JNN60_RS04395 () | 914897..915130 | + | 234 | WP_000958492.1 | AlpA family transcriptional regulator | - |
| JNN60_RS04400 () | 915402..915902 | + | 501 | WP_032216520.1 | hypothetical protein | - |
| JNN60_RS04405 () | 915991..916176 | + | 186 | WP_202850069.1 | hypothetical protein | - |
| JNN60_RS04410 () | 916154..917833 | + | 1680 | Protein_867 | hypothetical protein | VF |
| JNN60_RS04415 () | 917797..918642 | + | 846 | WP_000439135.1 | hypothetical protein | VF |
| JNN60_RS04420 () | 918602..919476 | - | 875 | Protein_869 | IS66 family transposase ISEc49 | Transposase |
| JNN60_RS04425 () | 919483..919875 | - | 393 | WP_000950652.1 | IS66 family transposase ISEc49 | Transposase |
| JNN60_RS04430 () | 919862..920191 | - | 330 | WP_000042910.1 | IS66 family transposase ISEc49 | Transposase |
| JNN60_RS04435 () | 920321..920993 | + | 673 | Protein_872 | IS3 family transposase ISEc48 | Transposase |
| JNN60_RS04440 () | 921030..921185 | - | 156 | Protein_873 | integrase | - |
| JNN60_RS04445 () | 921393..926351 | + | 4959 | WP_000877066.1 | NERD domain-containing protein | - |
| JNN60_RS04450 () | 926351..927898 | + | 1548 | WP_001294844.1 | hypothetical protein | - |
| JNN60_RS04455 () | 928113..929303 | + | 1191 | Protein_876 | IS3 family transposase | - |
| JNN60_RS04460 () | 929450..929746 | - | 297 | Protein_877 | transposase | - |
| JNN60_RS04465 () | 929726..929824 | - | 99 | WP_000745631.1 | IS3 family transposase ISRaq1 | Transposase |
| JNN60_RS04470 () | 929907..930009 | + | 103 | Protein_879 | integrase | - |
| JNN60_RS04475 () | 930264..931193 | + | 930 | WP_001328257.1 | DNA (cytosine-5-)-methyltransferase | - |
| JNN60_RS04480 () | 931174..932130 | - | 957 | WP_000301136.1 | hypothetical protein | - |
| JNN60_RS04485 () | 932389..933617 | + | 1229 | WP_166426901.1 | IS3 family transposase IS2 | Transposase |
| JNN60_RS04490 () | 933874..934293 | + | 420 | WP_000422706.1 | IS66 family transposase ISEc23 | Transposase |
| JNN60_RS04495 () | 934290..934640 | + | 351 | WP_000624710.1 | IS66 family transposase ISEc47 | Transposase |
| JNN60_RS04500 () | 934671..935432 | + | 762 | Protein_885 | IS66 family transposase ISEc23 | Transposase |
| JNN60_RS04505 () | 935661..936893 | - | 1233 | WP_001389184.1 | MFS transporter | - |
| JNN60_RS04510 () | 936908..937285 | - | 378 | WP_001389183.1 | RidA family protein | - |
| JNN60_RS04515 () | 937307..938266 | - | 960 | WP_000765976.1 | sugar phosphate isomerase/epimerase | - |
| JNN60_RS04520 () | 938452..939114 | + | 663 | WP_000836532.1 | PAS domain-containing protein | - |
| JNN60_RS04525 () | 939232..939378 | - | 147 | WP_001324285.1 | hypothetical protein | - |
| JNN60_RS04530 () | 940047..940967 | + | 921 | WP_000107666.1 | aminoimidazole riboside kinase | - |
| JNN60_RS04535 () | 941135..942652 | + | 1518 | WP_000277208.1 | carbohydrate porin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|