MGE detailed information
MGE type: Genomic_island MGE length: 42227 bp
Accession: NZ_CP068809 Location: 3925071..3967297 Organism: Escherichia coli strain RIVM_C028497 Replicon: chromosome
Accession: NZ_CP068809 Location: 3925071..3967297 Organism: Escherichia coli strain RIVM_C028497 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN39_RS18680 () | 3920436..3920894 | - | 459 | WP_001291991.1 | xanthine phosphoribosyltransferase | - |
| JNN39_RS18685 () | 3921155..3922612 | + | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| JNN39_RS18690 () | 3922669..3923283 | - | 615 | WP_000602124.1 | peptide chain release factor H | - |
| JNN39_RS18695 () | 3923280..3924419 | - | 1140 | WP_000521561.1 | RNA ligase RtcB family protein | - |
| JNN39_RS18700 () | 3924609..3925061 | - | 453 | WP_001059895.1 | GNAT family N-acetyltransferase | - |
| JNN39_RS18705 () | 3925071..3925469 | - | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| JNN39_RS18710 () | 3925472..3925765 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| JNN39_RS18715 () | 3925817..3926872 | - | 1056 | WP_001226168.1 | DNA polymerase IV | - |
| JNN39_RS18720 () | 3926943..3927728 | - | 786 | WP_000207578.1 | hypothetical protein | VF |
| JNN39_RS18725 () | 3927700..3929412 | + | 1713 | Protein_3671 | hypothetical protein | VF |
| JNN39_RS18730 () | 3929732..3930229 | - | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| JNN39_RS18735 () | 3930405..3931154 | - | 750 | WP_000093934.1 | hypothetical protein | VF |
| JNN39_RS18740 () | 3931466..3932206 | + | 741 | WP_069896422.1 | murein L,D-transpeptidase | - |
| JNN39_RS18745 () | 3932177..3932944 | - | 768 | WP_001298195.1 | class II glutamine amidotransferase | - |
| JNN39_RS18750 () | 3933149..3933727 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| JNN39_RS18755 () | 3933967..3936411 | + | 2445 | WP_000973131.1 | hypothetical protein | VF |
| JNN39_RS18760 () | 3936454..3936900 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| JNN39_RS18765 () | 3937081..3937851 | + | 771 | WP_001118042.1 | 2-oxoglutaramate amidase | - |
| JNN39_RS18770 () | 3937902..3938096 | - | 195 | Protein_3680 | transposase | - |
| JNN39_RS18775 () | 3938122..3938610 | - | 489 | WP_001298174.1 | integrating conjugative element protein | - |
| JNN39_RS18780 () | 3938967..3939664 | - | 698 | Protein_3682 | IS1 family transposase IS1R | Transposase |
| JNN39_RS18785 () | 3939883..3940680 | + | 798 | WP_015059991.1 | hypothetical protein | ARG |
| JNN39_RS18790 () | 3940982..3941893 | - | 912 | WP_015586033.1 | HTH-type transcriptional regulator HdfR | VF |
| JNN39_RS18795 () | 3942196..3943404 | + | 1209 | WP_001206290.1 | IS4 family transposase IS10A | Transposase |
| JNN39_RS18800 () | 3943417..3943644 | + | 228 | Protein_3686 | CPBP family intramembrane metalloprotease | - |
| JNN39_RS18805 () | 3943736..3943993 | + | 258 | WP_004187429.1 | type II toxin-antitoxin system antitoxin PemI | - |
| JNN39_RS18810 () | 3943962..3944327 | + | 366 | WP_020277900.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| JNN39_RS18815 () | 3944420..3944854 | + | 435 | WP_004187425.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JNN39_RS18820 () | 3944842..3946107 | + | 1266 | WP_019725070.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| JNN39_RS18825 () | 3946230..3946439 | - | 210 | WP_004187413.1 | hypothetical protein | - |
| JNN39_RS18830 () | 3946442..3946660 | - | 219 | WP_004187411.1 | hypothetical protein | - |
| JNN39_RS18835 () | 3946705..3947388 | - | 684 | WP_015059994.1 | hypothetical protein | - |
| JNN39_RS18840 () | 3947385..3947657 | - | 273 | WP_015059995.1 | helix-turn-helix transcriptional regulator | - |
| JNN39_RS18845 () | 3947676..3948863 | - | 1188 | WP_015059996.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| JNN39_RS18850 () | 3949390..3949734 | + | 345 | WP_004187406.1 | hypothetical protein | - |
| JNN39_RS18855 () | 3949738..3949917 | + | 180 | WP_122019363.1 | hypothetical protein | - |
| JNN39_RS18860 () | 3949917..3950501 | + | 585 | WP_015059997.1 | hypothetical protein | - |
| JNN39_RS18865 () | 3950807..3951352 | - | 546 | WP_004187400.1 | hypothetical protein | - |
| JNN39_RS18870 () | 3951493..3951954 | + | 462 | WP_004187397.1 | hypothetical protein | - |
| JNN39_RS18875 () | 3951951..3952199 | + | 249 | WP_004187394.1 | helix-turn-helix domain-containing protein | - |
| JNN39_RS18880 () | 3952192..3952779 | + | 588 | WP_004187392.1 | restriction endonuclease | - |
| JNN39_RS18885 () | 3952776..3953261 | + | 486 | WP_004187390.1 | hypothetical protein | - |
| JNN39_RS18890 () | 3953258..3953506 | + | 249 | WP_004187387.1 | hypothetical protein | - |
| JNN39_RS18895 () | 3953525..3954265 | + | 741 | WP_004187383.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| JNN39_RS18900 () | 3954506..3955480 | + | 975 | WP_004187382.1 | plasmid segregation protein ParM | - |
| JNN39_RS18905 () | 3955483..3955926 | + | 444 | WP_004187380.1 | plasmid partitioning/stability family protein | - |
| JNN39_RS18910 () | 3955936..3956499 | + | 564 | WP_019725065.1 | Cardiolipin synthase B | VF |
| JNN39_RS18915 () | 3956878..3957123 | + | 246 | WP_019725064.1 | hypothetical protein | - |
| JNN39_RS18920 () | 3957116..3957595 | + | 480 | WP_004187375.1 | hypothetical protein | - |
| JNN39_RS18925 () | 3957624..3958034 | + | 411 | WP_004206907.1 | hypothetical protein | - |
| JNN39_RS18930 () | 3958152..3958415 | + | 264 | WP_004187372.1 | hypothetical protein | - |
| JNN39_RS18935 () | 3958437..3958799 | + | 363 | WP_004187371.1 | DUF3085 domain-containing protein | - |
| JNN39_RS18940 () | 3958921..3959370 | + | 450 | WP_004187369.1 | Mov34/MPN/PAD-1 family protein | - |
| JNN39_RS18945 () | 3959415..3959681 | + | 267 | WP_004187367.1 | helix-turn-helix domain-containing protein | - |
| JNN39_RS18950 () | 3959745..3960047 | + | 303 | Protein_3716 | DGQHR domain-containing protein | - |
| JNN39_RS18955 () | 3960062..3960759 | - | 698 | Protein_3717 | IS1 family transposase IS1R | Transposase |
| JNN39_RS18960 () | 3960816..3961079 | - | 264 | Protein_3718 | hypothetical protein | - |
| JNN39_RS18965 () | 3961308..3962072 | - | 765 | Protein_3719 | ISAs1 family transposase | - |
| JNN39_RS18970 () | 3962330..3962620 | - | 291 | WP_000513317.1 | hypothetical protein | - |
| JNN39_RS18975 () | 3962595..3964034 | - | 1440 | WP_000528851.1 | DUF4150 domain-containing protein | - |
| JNN39_RS18980 () | 3964027..3965073 | - | 1047 | WP_000571853.1 | DUF2169 domain-containing protein | - |
| JNN39_RS18985 () | 3965180..3967162 | - | 1983 | Protein_3723 | hypothetical protein | VF |
| JNN39_RS18990 () | 3967383..3967901 | - | 519 | WP_001142963.1 | Hcp family type VI secretion system effector | - |
| JNN39_RS18995 () | 3968607..3969110 | + | 504 | WP_000041480.1 | type VI secretion system contractile sheath small subunit | - |
| JNN39_RS19000 () | 3969133..3970617 | + | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| JNN39_RS19005 () | 3970622..3971047 | + | 426 | WP_001189667.1 | type VI secretion system baseplate subunit TssE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|