MGE detailed information
MGE type: Prophage MGE length: 75535 bp
Accession: NZ_CP068799 Location: 3954464..4029998 Organism: Escherichia coli strain RIVM_C017887 Replicon: chromosome
Accession: NZ_CP068799 Location: 3954464..4029998 Organism: Escherichia coli strain RIVM_C017887 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN46_RS18900 () | 3949498..3952128 | - | 2631 | WP_000490940.1 | S/F1C fimbrial usher SfaF/FocD | - |
| JNN46_RS18905 () | 3952199..3952894 | - | 696 | WP_000975446.1 | S/F1C fimbrial biogenesis chaperone SfaE/FocC | - |
| JNN46_RS18910 () | 3952935..3953474 | - | 540 | WP_000703305.1 | S/F1C fimbrial minor subunit SfaD | - |
| JNN46_RS18915 () | 3953545..3954090 | - | 546 | WP_000768216.1 | S-fimbrial adhesin major pilin SfaA-I | - |
| JNN46_RS18920 () | 3954464..3954793 | - | 330 | WP_000046975.1 | Major pilu subunit operon regulatory protein PapB | VF |
| JNN46_RS18925 () | 3955149..3955433 | + | 285 | WP_152851977.1 | P fimbrial regulatory protein KS71A | VF |
| JNN46_RS18930 () | 3955708..3956277 | - | 570 | WP_001337392.1 | hypothetical protein | - |
| JNN46_RS18935 () | 3956519..3957031 | - | 513 | Protein_3712 | hypothetical protein | - |
| JNN46_RS18940 () | 3957489..3957947 | + | 459 | WP_001540934.1 | hypothetical protein | - |
| JNN46_RS18945 () | 3958042..3958728 | + | 687 | WP_000406621.1 | CPBP family intramembrane metalloprotease | - |
| JNN46_RS18950 () | 3958905..3959183 | - | 279 | WP_024186735.1 | microcin McmA | - |
| JNN46_RS18955 () | 3959437..3960593 | - | 1157 | Protein_3716 | Toxin RTX-I translocation ATP-binding protein | VF |
| JNN46_RS18960 () | 3960659..3961810 | + | 1152 | Protein_3717 | IS3 family transposase ISEc16 | Transposase |
| JNN46_RS18965 () | 3962687..3963721 | - | 1035 | WP_001335133.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| JNN46_RS18970 () | 3964002..3964244 | + | 243 | WP_071587598.1 | DUF4158 domain-containing protein | - |
| JNN46_RS18975 () | 3964270..3965016 | + | 747 | Protein_3720 | ISL3 family transposase | - |
| JNN46_RS18980 () | 3965242..3966993 | + | 1752 | WP_000273845.1 | NTPase | - |
| JNN46_RS18985 () | 3967044..3967826 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| JNN46_RS18990 () | 3967823..3968845 | - | 1023 | WP_001298025.1 | IS21 family transposase IS100kyp | Transposase |
| JNN46_RS18995 () | 3968932..3969621 | + | 690 | Protein_3724 | PifA | - |
| JNN46_RS19000 () | 3969791..3971322 | + | 1532 | WP_089644009.1 | IS3 family transposase ISKpn38 | Transposase |
| JNN46_RS19005 () | 3971530..3972093 | - | 564 | WP_000282079.1 | inovirus-type Gp2 protein | - |
| JNN46_RS19010 () | 3973063..3974496 | - | 1434 | WP_000335706.1 | DUF3987 domain-containing protein | - |
| JNN46_RS19015 () | 3974745..3974972 | - | 228 | WP_000120393.1 | DUF3987 domain-containing protein | - |
| JNN46_RS19020 () | 3975078..3975305 | - | 228 | WP_000266639.1 | AlpA family phage regulatory protein | - |
| JNN46_RS19025 () | 3975997..3977634 | + | 1638 | WP_000258743.1 | hypothetical protein | - |
| JNN46_RS19030 () | 3977721..3978317 | - | 597 | WP_001335540.1 | hypothetical protein | - |
| JNN46_RS19040 () | 3978818..3980071 | - | 1254 | WP_000893298.1 | glutamate-5-semialdehyde dehydrogenase | - |
| JNN46_RS19045 () | 3980083..3981186 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| JNN46_RS19050 () | 3981475..3982530 | + | 1056 | WP_000749900.1 | phosphoporin PhoE | - |
| JNN46_RS19055 () | 3982569..3982970 | - | 402 | WP_000174703.1 | sigma factor-binding protein Crl | - |
| JNN46_RS19060 () | 3983028..3984272 | - | 1245 | WP_000189578.1 | esterase FrsA | - |
| - () | 3983688..3983768 | - | 81 | NuclAT_4 | - | - |
| - () | 3983688..3983768 | - | 81 | NuclAT_4 | - | - |
| - () | 3983688..3983768 | - | 81 | NuclAT_4 | - | - |
| - () | 3983688..3983768 | - | 81 | NuclAT_4 | - | - |
| JNN46_RS19065 () | 3984364..3984822 | - | 459 | WP_001291991.1 | xanthine phosphoribosyltransferase | - |
| JNN46_RS19070 () | 3985083..3986540 | + | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| JNN46_RS19075 () | 3986597..3987211 | - | 615 | WP_000602124.1 | peptide chain release factor H | - |
| JNN46_RS19080 () | 3987208..3988347 | - | 1140 | WP_000521561.1 | RNA ligase RtcB family protein | - |
| JNN46_RS19085 () | 3988537..3988989 | - | 453 | WP_001059895.1 | GNAT family N-acetyltransferase | - |
| JNN46_RS19090 () | 3988999..3989397 | - | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| JNN46_RS19095 () | 3989400..3989693 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| JNN46_RS19100 () | 3989745..3990800 | - | 1056 | WP_001226168.1 | DNA polymerase IV | - |
| JNN46_RS19105 () | 3990871..3991656 | - | 786 | WP_000207578.1 | Chemotaxis protein LafU | VF |
| JNN46_RS19110 () | 3991628..3993340 | + | 1713 | Protein_3746 | Flagellar biosynthesis protein FlhA | VF |
| JNN46_RS19115 () | 3993368..3993577 | + | 210 | WP_071778446.1 | hypothetical protein | - |
| JNN46_RS19120 () | 3993660..3994157 | - | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| JNN46_RS19125 () | 3994333..3995082 | - | 750 | WP_000093934.1 | Murein DD-endopeptidase MepH | VF |
| JNN46_RS19130 () | 3995394..3996134 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| JNN46_RS19135 () | 3996105..3996872 | - | 768 | WP_001298195.1 | class II glutamine amidotransferase | - |
| JNN46_RS19140 () | 3997077..3997655 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| JNN46_RS19145 () | 3997895..4000339 | + | 2445 | WP_000973131.1 | Acyl-coenzyme A dehydrogenase | VF |
| JNN46_RS19150 () | 4000382..4000828 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| JNN46_RS19155 () | 4001009..4001779 | + | 771 | WP_001118042.1 | 2-oxoglutaramate amidase | - |
| JNN46_RS19160 () | 4001830..4002024 | - | 195 | Protein_3756 | transposase | - |
| JNN46_RS19165 () | 4002050..4002538 | - | 489 | WP_001298174.1 | integrating conjugative element protein | - |
| JNN46_RS19170 () | 4002895..4003592 | - | 698 | Protein_3758 | IS1 family transposase IS1R | Transposase |
| JNN46_RS19175 () | 4003811..4004608 | + | 798 | WP_015059991.1 | Beta-lactamase OXA-10 | ARG |
| JNN46_RS19180 () | 4004910..4005821 | - | 912 | WP_015586033.1 | HTH-type transcriptional regulator DmlR | VF |
| JNN46_RS19185 () | 4006124..4007332 | + | 1209 | WP_001206290.1 | IS4 family transposase IS10A | Transposase |
| JNN46_RS19190 () | 4007345..4007572 | + | 228 | Protein_3762 | CPBP family intramembrane metalloprotease | - |
| JNN46_RS19195 () | 4007664..4007921 | + | 258 | WP_004187429.1 | type II toxin-antitoxin system antitoxin PemI | - |
| JNN46_RS19200 () | 4007890..4008255 | + | 366 | WP_020277900.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| JNN46_RS19205 () | 4008348..4008782 | + | 435 | WP_004187425.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JNN46_RS19210 () | 4008770..4010035 | + | 1266 | WP_019725070.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| JNN46_RS19215 () | 4010158..4010367 | - | 210 | WP_004187413.1 | hypothetical protein | - |
| JNN46_RS19220 () | 4010370..4010588 | - | 219 | WP_004187411.1 | hypothetical protein | - |
| JNN46_RS19225 () | 4010633..4011316 | - | 684 | WP_015059994.1 | hypothetical protein | - |
| JNN46_RS19230 () | 4011313..4011585 | - | 273 | WP_015059995.1 | helix-turn-helix transcriptional regulator | - |
| JNN46_RS19235 () | 4011604..4012791 | - | 1188 | WP_015059996.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| JNN46_RS19240 () | 4013318..4013662 | + | 345 | WP_004187406.1 | hypothetical protein | - |
| JNN46_RS19245 () | 4013687..4013845 | + | 159 | WP_004187405.1 | hypothetical protein | - |
| JNN46_RS19250 () | 4013845..4014429 | + | 585 | WP_015059997.1 | hypothetical protein | - |
| JNN46_RS19255 () | 4014735..4015280 | - | 546 | WP_004187400.1 | hypothetical protein | - |
| JNN46_RS19260 () | 4015421..4015882 | + | 462 | WP_004187397.1 | hypothetical protein | - |
| JNN46_RS19265 () | 4015879..4016127 | + | 249 | WP_004187394.1 | helix-turn-helix domain-containing protein | - |
| JNN46_RS19270 () | 4016120..4016707 | + | 588 | WP_004187392.1 | restriction endonuclease | - |
| JNN46_RS19275 () | 4016704..4017189 | + | 486 | WP_004187390.1 | hypothetical protein | - |
| JNN46_RS19280 () | 4017186..4017434 | + | 249 | WP_004187387.1 | hypothetical protein | - |
| JNN46_RS19285 () | 4017453..4018193 | + | 741 | WP_004187383.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| JNN46_RS19290 () | 4018434..4019408 | + | 975 | WP_004187382.1 | plasmid segregation protein ParM | - |
| JNN46_RS19295 () | 4019411..4019854 | + | 444 | WP_004187380.1 | plasmid partitioning/stability family protein | - |
| JNN46_RS19300 () | 4019864..4020427 | + | 564 | WP_019725065.1 | Phospholipase D | VF |
| JNN46_RS19305 () | 4020806..4021051 | + | 246 | WP_019725064.1 | hypothetical protein | - |
| JNN46_RS19310 () | 4021044..4021523 | + | 480 | WP_004187375.1 | hypothetical protein | - |
| JNN46_RS19315 () | 4021552..4021962 | + | 411 | WP_004206907.1 | hypothetical protein | - |
| JNN46_RS19320 () | 4022080..4022343 | + | 264 | WP_004187372.1 | hypothetical protein | - |
| JNN46_RS19325 () | 4022365..4022727 | + | 363 | WP_004187371.1 | DUF3085 domain-containing protein | - |
| JNN46_RS19330 () | 4022849..4023298 | + | 450 | WP_004187369.1 | Mov34/MPN/PAD-1 family protein | - |
| JNN46_RS19335 () | 4023343..4023609 | + | 267 | WP_004187367.1 | helix-turn-helix domain-containing protein | - |
| JNN46_RS19340 () | 4023673..4023975 | + | 303 | Protein_3792 | DGQHR domain-containing protein | - |
| JNN46_RS19345 () | 4023990..4024687 | - | 698 | Protein_3793 | IS1 family transposase IS1R | Transposase |
| JNN46_RS19350 () | 4024744..4025007 | - | 264 | Protein_3794 | hypothetical protein | - |
| JNN46_RS19355 () | 4025236..4026000 | - | 765 | Protein_3795 | ISAs1 family transposase | - |
| JNN46_RS19360 () | 4026258..4026548 | - | 291 | WP_000513317.1 | hypothetical protein | - |
| JNN46_RS19365 () | 4026523..4027962 | - | 1440 | WP_000528851.1 | DUF4150 domain-containing protein | - |
| JNN46_RS19370 () | 4027955..4029001 | - | 1047 | WP_000571853.1 | DUF2169 domain-containing protein | - |
| JNN46_RS19375 () | 4029108..4031090 | - | 1983 | Protein_3799 | type VI secretion system tip protein VgrG | - |
| JNN46_RS19380 () | 4031311..4031829 | - | 519 | WP_001142963.1 | Hcp family type VI secretion system effector | - |
| JNN46_RS19385 () | 4032535..4033038 | + | 504 | WP_000041480.1 | type VI secretion system contractile sheath small subunit | - |
| JNN46_RS19390 () | 4033061..4034545 | + | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| JNN46_RS19395 () | 4034550..4034975 | + | 426 | WP_001189667.1 | type VI secretion system baseplate subunit TssE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|