MGE detailed information
MGE type: Prophage MGE length: 37955 bp
Accession: NZ_CP068796 Location: 2265727..2303681 Organism: Escherichia coli strain RIVM_C012087 Replicon: chromosome
Accession: NZ_CP068796 Location: 2265727..2303681 Organism: Escherichia coli strain RIVM_C012087 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN38_RS10910 () | 2260990..2261730 | + | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| JNN38_RS10915 () | 2261765..2262286 | + | 522 | WP_001551239.1 | crossover junction endodeoxyribonuclease RuvC | - |
| JNN38_RS10920 () | 2262288..2262890 | - | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| JNN38_RS10925 () | 2262961..2263026 | + | 66 | WP_010723105.1 | stress response small protein YobI | - |
| JNN38_RS10930 () | 2263165..2263776 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| JNN38_RS10935 () | 2263785..2264795 | + | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | - |
| JNN38_RS10940 () | 2264945..2265730 | - | 786 | WP_000571479.1 | zinc ABC transporter permease subunit ZnuB | - |
| JNN38_RS10945 () | 2265727..2266482 | - | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| JNN38_RS10950 () | 2266561..2267493 | + | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| JNN38_RS10955 () | 2267509..2268831 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| JNN38_RS10960 () | 2268951..2269922 | + | 972 | WP_001551238.1 | Lipid A biosynthesis myristoyltransferase | VF |
| JNN38_RS10965 () | 2270054..2271496 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| JNN38_RS10970 () | 2271624..2272493 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| JNN38_RS10975 () | 2272831..2274306 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| JNN38_RS10980 () | 2274541..2276352 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| JNN38_RS10985 () | 2276389..2277030 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| JNN38_RS10990 () | 2277085..2278263 | - | 1179 | WP_001551236.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JNN38_RS10995 () | 2278397..2278687 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| JNN38_RS11000 () | 2278754..2279110 | + | 357 | WP_001295500.1 | protein YebF | - |
| JNN38_RS11005 () | 2279437..2280096 | + | 660 | WP_000024733.1 | tellurite resistance TerB family protein | - |
| JNN38_RS11010 () | 2280260..2281429 | - | 1170 | WP_001551234.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| JNN38_RS11015 () | 2281486..2281911 | + | 426 | WP_000064873.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| JNN38_RS11020 () | 2282068..2284128 | + | 2061 | WP_001551233.1 | oligopeptidase B | - |
| JNN38_RS11025 () | 2284125..2284787 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN38_RS11030 () | 2284811..2285467 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN38_RS11035 () | 2285569..2285799 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN38_RS11040 () | 2285938..2286312 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN38_RS11045 () | 2286316..2287188 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN38_RS11050 () | 2287201..2287542 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - () | 2287570..2287841 | - | 272 | - | - | Antitoxin Detail |
| - () | 2287700..2287803 | + | 104 | - | - | Toxin Detail |
| JNN38_RS11055 () | 2287938..2288594 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN38_RS11060 () | 2288595..2288786 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN38_RS11065 () | 2288891..2289127 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN38_RS11070 () | 2289245..2290684 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JNN38_RS11075 () | 2290764..2293397 | - | 2634 | WP_001306757.1 | hypothetical protein | VF |
| JNN38_RS11080 () | 2293366..2294649 | - | 1284 | WP_001316436.1 | membrane integrity lipid transport subunit YebS | - |
| JNN38_RS11085 () | 2294779..2295276 | + | 498 | WP_001043876.1 | L-methionine (R)-S-oxide reductase | - |
| JNN38_RS11090 () | 2295373..2296071 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| JNN38_RS11095 () | 2296091..2298139 | + | 2049 | WP_001055785.1 | carboxy terminal-processing peptidase | - |
| JNN38_RS11100 () | 2298331..2299212 | + | 882 | WP_000984517.1 | protease HtpX | - |
| JNN38_RS11105 () | 2299258..2300631 | - | 1374 | WP_001551227.1 | MFS transporter | - |
| JNN38_RS11110 () | 2300808..2301599 | + | 792 | WP_001262179.1 | DNA-binding transcriptional regulator KdgR | - |
| JNN38_RS11115 () | 2301743..2301982 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| JNN38_RS11120 () | 2302141..2302284 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| JNN38_RS11125 () | 2302359..2302646 | + | 288 | WP_001006855.1 | YebO family protein | - |
| JNN38_RS11130 () | 2303316..2303459 | + | 144 | WP_001295496.1 | YobF family protein | - |
| JNN38_RS11135 () | 2303472..2303681 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| JNN38_RS11140 () | 2303847..2304656 | + | 810 | WP_000010109.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| JNN38_RS11145 () | 2304653..2305219 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| JNN38_RS11150 () | 2305648..2306106 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| JNN38_RS11155 () | 2306161..2307012 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| JNN38_RS11160 () | 2307025..2307825 | - | 801 | WP_000406928.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|