Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2287570..2287841 | Replicon | chromosome |
| Accession | NZ_CP068796 | ||
| Organism | Escherichia coli strain RIVM_C012087 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2287700..2287803 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2287570..2287841 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN38_RS11025 | 2284125..2284787 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN38_RS11030 | 2284811..2285467 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JNN38_RS11035 | 2285569..2285799 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN38_RS11040 | 2285938..2286312 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN38_RS11045 | 2286316..2287188 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JNN38_RS11050 | 2287201..2287542 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2287570..2287841 | - | 272 | - | - | Antitoxin |
| - | 2287700..2287803 | + | 104 | - | - | Toxin |
| JNN38_RS11055 | 2287938..2288594 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JNN38_RS11060 | 2288595..2288786 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN38_RS11065 | 2288891..2289127 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN38_RS11070 | 2289245..2290684 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2265727..2303681 | 37954 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187739 NZ_CP068796:2287700-2287803 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187739 NZ_CP068796:c2287841-2287570 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
