MGE detailed information
MGE type: Prophage MGE length: 89610 bp
Accession: NZ_CP068795 Location: 1998622..2088231 Organism: Escherichia coli strain RIVM_C011532 Replicon: chromosome
Accession: NZ_CP068795 Location: 1998622..2088231 Organism: Escherichia coli strain RIVM_C011532 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN54_RS09515 () | 1995646..1996617 | - | 972 | WP_000564726.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| JNN54_RS09520 () | 1996614..1997357 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| JNN54_RS09525 () | 1997398..1997793 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| JNN54_RS09530 () | 1997846..1998625 | - | 780 | WP_050582975.1 | DUF72 domain-containing protein | - |
| JNN54_RS09535 () | 1998622..1999881 | - | 1260 | WP_072650044.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| JNN54_RS09540 () | 1999924..2000169 | - | 246 | WP_023283988.1 | excisionase family protein | - |
| JNN54_RS09545 () | 2000329..2000547 | - | 219 | WP_046659703.1 | TraR/DksA C4-type zinc finger protein | - |
| JNN54_RS09550 () | 2000544..2000735 | - | 192 | WP_025269983.1 | DUF1382 family protein | - |
| JNN54_RS09555 () | 2000732..2001238 | - | 507 | WP_064162448.1 | HNH endonuclease | - |
| JNN54_RS09560 () | 2001452..2001979 | - | 528 | WP_072650043.1 | phage N-6-adenine-methyltransferase | - |
| JNN54_RS09565 () | 2002008..2002631 | - | 624 | WP_025269980.1 | YqaJ viral recombinase family protein | - |
| JNN54_RS09570 () | 2002628..2003374 | - | 747 | WP_072650042.1 | phage recombination protein Bet | - |
| JNN54_RS09575 () | 2003391..2003675 | - | 285 | WP_016529276.1 | host nuclease inhibitor GamL | - |
| JNN54_RS09580 () | 2003683..2004654 | - | 972 | WP_072650041.1 | hypothetical protein | - |
| JNN54_RS09585 () | 2004742..2004936 | - | 195 | WP_019704100.1 | hypothetical protein | - |
| JNN54_RS09590 () | 2004929..2005087 | - | 159 | WP_167578805.1 | hypothetical protein | - |
| JNN54_RS09595 () | 2005399..2006088 | - | 690 | WP_042632509.1 | helix-turn-helix transcriptional regulator | - |
| JNN54_RS09600 () | 2006216..2006449 | + | 234 | WP_072650040.1 | helix-turn-helix domain-containing protein | - |
| JNN54_RS09605 () | 2006490..2006711 | + | 222 | WP_001548453.1 | hypothetical protein | - |
| JNN54_RS09610 () | 2006797..2007657 | + | 861 | WP_072650039.1 | replication protein | - |
| JNN54_RS09615 () | 2007654..2008502 | + | 849 | WP_072650038.1 | IS21 family transposase ISSsp5 | Transposase |
| JNN54_RS09620 () | 2008499..2008792 | + | 294 | WP_012542626.1 | protein ren | - |
| JNN54_RS09625 () | 2008789..2009358 | + | 570 | WP_072650037.1 | hypothetical protein | - |
| JNN54_RS09630 () | 2009355..2009615 | + | 261 | WP_072650036.1 | DUF4752 family protein | - |
| JNN54_RS09635 () | 2009612..2010856 | + | 1245 | WP_072650035.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| JNN54_RS09640 () | 2010868..2011470 | - | 603 | WP_072650034.1 | Ubiquinone biosynthesis O-methyltransferase | VF |
| JNN54_RS09645 () | 2011684..2012381 | + | 698 | Protein_1882 | IS1 family transposase IS1A | Transposase |
| JNN54_RS09650 () | 2012451..2012816 | - | 366 | Protein_1883 | hypothetical protein | - |
| JNN54_RS09655 () | 2013305..2013472 | + | 168 | WP_114141321.1 | flagellar FlbD family protein | - |
| JNN54_RS09660 () | 2013562..2014158 | + | 597 | WP_072650026.1 | DUF1367 family protein | - |
| JNN54_RS09665 () | 2014164..2014334 | + | 171 | WP_072650032.1 | hypothetical protein | - |
| JNN54_RS09670 () | 2014327..2014908 | + | 582 | WP_072650027.1 | recombination protein NinG | - |
| JNN54_RS09675 () | 2014905..2015045 | + | 141 | WP_089454953.1 | YlcG family protein | - |
| JNN54_RS09680 () | 2015042..2015731 | + | 690 | WP_072650028.1 | antiterminator | - |
| JNN54_RS09690 () | 2016187..2016486 | + | 300 | WP_122633140.1 | phage holin family protein | - |
| JNN54_RS09695 () | 2016483..2017022 | + | 540 | WP_052921350.1 | glycoside hydrolase family 108 protein | - |
| JNN54_RS09700 () | 2017019..2017366 | + | 348 | WP_032412824.1 | hypothetical protein | - |
| JNN54_RS09705 () | 2017363..2017638 | + | 276 | WP_046659666.1 | hypothetical protein | - |
| JNN54_RS09710 () | 2017589..2017786 | + | 198 | WP_046659665.1 | hypothetical protein | - |
| JNN54_RS09715 () | 2017884..2018192 | + | 309 | WP_024623185.1 | hypothetical protein | - |
| JNN54_RS09720 () | 2018189..2018455 | + | 267 | WP_046659662.1 | hypothetical protein | - |
| JNN54_RS09725 () | 2019099..2019587 | + | 489 | WP_004218030.1 | hypothetical protein | - |
| JNN54_RS09730 () | 2019538..2020938 | + | 1401 | WP_021312714.1 | PBSX family phage terminase large subunit | - |
| JNN54_RS09735 () | 2021176..2022627 | + | 1452 | WP_061355315.1 | DUF1073 domain-containing protein | - |
| JNN54_RS09740 () | 2022683..2023231 | + | 549 | WP_072650033.1 | hypothetical protein | - |
| JNN54_RS09745 () | 2023270..2023692 | + | 423 | WP_046659655.1 | hypothetical protein | - |
| JNN54_RS09750 () | 2023748..2024944 | + | 1197 | WP_072650029.1 | DUF2213 domain-containing protein | - |
| JNN54_RS09755 () | 2024954..2025448 | + | 495 | WP_052921354.1 | hypothetical protein | - |
| JNN54_RS09760 () | 2025460..2026401 | + | 942 | WP_040217289.1 | DUF2184 domain-containing protein | - |
| JNN54_RS09765 () | 2026441..2026722 | + | 282 | WP_025714262.1 | IS66 family transposase ISStau5 | Transposase |
| JNN54_RS09770 () | 2026691..2027110 | + | 420 | WP_072650030.1 | DUF4054 domain-containing protein | - |
| JNN54_RS09775 () | 2027107..2027613 | + | 507 | WP_052921357.1 | hypothetical protein | - |
| JNN54_RS09780 () | 2027613..2028017 | + | 405 | WP_052921358.1 | hypothetical protein | - |
| JNN54_RS09785 () | 2028112..2028552 | + | 441 | WP_004152176.1 | hypothetical protein | - |
| JNN54_RS09790 () | 2028556..2029701 | + | 1146 | WP_046659646.1 | DUF3383 family protein | - |
| JNN54_RS09795 () | 2029711..2030154 | + | 444 | WP_023312781.1 | DUF3277 family protein | - |
| JNN54_RS09800 () | 2030158..2030577 | + | 420 | WP_040181217.1 | hypothetical protein | - |
| JNN54_RS09805 () | 2030619..2030771 | + | 153 | WP_016244729.1 | hypothetical protein | - |
| JNN54_RS09810 () | 2030761..2032761 | + | 2001 | WP_061355311.1 | lytic transglycosylase domain-containing protein | - |
| JNN54_RS09815 () | 2032761..2033360 | + | 600 | WP_023158909.1 | hypothetical protein | - |
| JNN54_RS09820 () | 2033436..2033663 | + | 228 | WP_072196455.1 | hypothetical protein | - |
| JNN54_RS09825 () | 2033666..2034694 | + | 1029 | WP_046659638.1 | hypothetical protein | - |
| JNN54_RS09830 () | 2034691..2035035 | + | 345 | WP_029487556.1 | hypothetical protein | - |
| JNN54_RS09835 () | 2035085..2035267 | + | 183 | WP_004199301.1 | hypothetical protein | - |
| JNN54_RS09840 () | 2035310..2035876 | + | 567 | WP_046659635.1 | hypothetical protein | - |
| JNN54_RS09845 () | 2035931..2036584 | + | 654 | WP_046659632.1 | hypothetical protein | - |
| JNN54_RS09850 () | 2036864..2037217 | + | 354 | WP_004152573.1 | hypothetical protein | - |
| JNN54_RS09855 () | 2037217..2038413 | + | 1197 | WP_061355309.1 | baseplate J/gp47 family protein | - |
| JNN54_RS09860 () | 2038410..2039183 | + | 774 | WP_032454856.1 | DUF2612 domain-containing protein | - |
| JNN54_RS09865 () | 2039183..2040064 | + | 882 | WP_025270001.1 | hypothetical protein | - |
| JNN54_RS09870 () | 2040064..2040234 | + | 171 | WP_164686900.1 | hypothetical protein | - |
| JNN54_RS09875 () | 2040316..2042400 | + | 2085 | WP_124056023.1 | hypothetical protein | - |
| JNN54_RS09880 () | 2042409..2042588 | + | 180 | WP_025270003.1 | hypothetical protein | - |
| JNN54_RS09885 () | 2042702..2043019 | + | 318 | WP_025270004.1 | hypothetical protein | - |
| JNN54_RS09890 () | 2043284..2043850 | - | 567 | WP_000891621.1 | hydrolase | - |
| JNN54_RS09895 () | 2044160..2045932 | + | 1773 | WP_001258678.1 | aspartate--tRNA ligase | - |
| JNN54_RS09900 () | 2046050..2046502 | + | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| JNN54_RS09905 () | 2046531..2047271 | + | 741 | WP_000907234.1 | transcriptional regulatory protein YebC | VF |
| JNN54_RS09910 () | 2047306..2047827 | + | 522 | WP_001379888.1 | crossover junction endodeoxyribonuclease RuvC | - |
| JNN54_RS09915 () | 2047829..2048431 | - | 603 | WP_001024904.1 | YebB family permuted papain-like enzyme | - |
| JNN54_RS09920 () | 2048502..2048567 | + | 66 | WP_072094247.1 | stress response small protein YobI | - |
| JNN54_RS09925 () | 2048706..2049317 | + | 612 | WP_000580327.1 | Holliday junction branch migration protein RuvA | - |
| JNN54_RS09930 () | 2049326..2050336 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| JNN54_RS09935 () | 2050483..2051268 | - | 786 | WP_000571479.1 | hypothetical protein | VF |
| JNN54_RS09940 () | 2051265..2052020 | - | 756 | WP_061348895.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| JNN54_RS09945 () | 2052099..2053031 | + | 933 | WP_072318590.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| JNN54_RS09950 () | 2053047..2054369 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| JNN54_RS09955 () | 2054489..2055460 | + | 972 | WP_000448381.1 | Lipid A biosynthesis myristoyltransferase | VF |
| JNN54_RS09960 () | 2055591..2057033 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| JNN54_RS09965 () | 2057161..2058030 | - | 870 | WP_001056706.1 | DNA-binding transcriptional regulator HexR | - |
| JNN54_RS09970 () | 2058368..2059843 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| JNN54_RS09975 () | 2060078..2061889 | + | 1812 | WP_001069487.1 | phosphogluconate dehydratase | - |
| JNN54_RS09980 () | 2061926..2062567 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| JNN54_RS09985 () | 2062623..2063801 | - | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JNN54_RS09990 () | 2063935..2064225 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| JNN54_RS09995 () | 2064292..2064648 | + | 357 | WP_001295500.1 | protein YebF | - |
| JNN54_RS10000 () | 2064975..2065634 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| JNN54_RS10005 () | 2065843..2067903 | + | 2061 | WP_000936951.1 | oligopeptidase B | - |
| JNN54_RS10010 () | 2067900..2068562 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN54_RS10015 () | 2068586..2069242 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| JNN54_RS10020 () | 2069344..2069574 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN54_RS10025 () | 2069713..2070087 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN54_RS10030 () | 2070091..2070963 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| JNN54_RS10035 () | 2070976..2071317 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - () | 2071345..2071616 | - | 272 | - | - | Antitoxin Detail |
| - () | 2071475..2071578 | + | 104 | - | - | Toxin Detail |
| JNN54_RS10040 () | 2071713..2072369 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| JNN54_RS10045 () | 2072370..2072561 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN54_RS10050 () | 2072666..2072902 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN54_RS10055 () | 2073020..2074459 | - | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JNN54_RS10060 () | 2074539..2077172 | - | 2634 | WP_001297532.1 | hypothetical protein | VF |
| JNN54_RS10065 () | 2077141..2078424 | - | 1284 | WP_001300803.1 | membrane integrity lipid transport subunit YebS | - |
| JNN54_RS10070 () | 2078554..2079051 | + | 498 | WP_059321916.1 | L-methionine (R)-S-oxide reductase | - |
| JNN54_RS10075 () | 2079148..2079846 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| JNN54_RS10080 () | 2079866..2081914 | + | 2049 | WP_001315679.1 | carboxy terminal-processing peptidase | - |
| JNN54_RS10085 () | 2082106..2082987 | + | 882 | WP_000984517.1 | protease HtpX | - |
| JNN54_RS10090 () | 2083033..2084406 | - | 1374 | WP_001127216.1 | MFS transporter | - |
| JNN54_RS10095 () | 2084583..2085374 | + | 792 | WP_001262182.1 | DNA-binding transcriptional regulator KdgR | - |
| JNN54_RS10100 () | 2085517..2085756 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| JNN54_RS10105 () | 2085915..2086058 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| JNN54_RS10110 () | 2086133..2086420 | + | 288 | WP_001006866.1 | YebO family protein | - |
| JNN54_RS10115 () | 2086505..2087202 | - | 698 | Protein_1975 | IS1 family transposase IS1A | Transposase |
| JNN54_RS10120 () | 2087866..2088009 | + | 144 | WP_001295496.1 | YobF family protein | - |
| JNN54_RS10125 () | 2088022..2088231 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| JNN54_RS10130 () | 2088397..2089206 | + | 810 | WP_000010115.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| JNN54_RS10135 () | 2089203..2089769 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| JNN54_RS10140 () | 2090198..2090656 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| JNN54_RS10145 () | 2090711..2091562 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| JNN54_RS10150 () | 2091575..2092375 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|