Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2071345..2071616 | Replicon | chromosome |
| Accession | NZ_CP068795 | ||
| Organism | Escherichia coli strain RIVM_C011532 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2071475..2071578 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2071345..2071616 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNN54_RS10010 | 2067900..2068562 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JNN54_RS10015 | 2068586..2069242 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| JNN54_RS10020 | 2069344..2069574 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JNN54_RS10025 | 2069713..2070087 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JNN54_RS10030 | 2070091..2070963 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| JNN54_RS10035 | 2070976..2071317 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2071345..2071616 | - | 272 | - | - | Antitoxin |
| - | 2071475..2071578 | + | 104 | - | - | Toxin |
| JNN54_RS10040 | 2071713..2072369 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| JNN54_RS10045 | 2072370..2072561 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JNN54_RS10050 | 2072666..2072902 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JNN54_RS10055 | 2073020..2074459 | - | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1998622..2088231 | 89609 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187715 NZ_CP068795:2071475-2071578 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187715 NZ_CP068795:c2071616-2071345 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
