MGE detailed information
MGE type: Genomic_island MGE length: 9352 bp
Accession: NZ_CP068680 Location: 602842..612193 Organism: Escherichia coli strain NCCP12480 Replicon: chromosome
Accession: NZ_CP068680 Location: 602842..612193 Organism: Escherichia coli strain NCCP12480 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKV47_RS02965 (598003) | 598003..599304 | + | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| JKV47_RS02970 (599420) | 599420..599758 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| JKV47_RS02975 (599734) | 599734..601431 | + | 1698 | WP_000068928.1 | protein-disulfide reductase DsbD | - |
| JKV47_RS02980 (601468) | 601468..602043 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| JKV47_RS02990 (602842) | 602842..604380 | + | 1539 | WP_001187177.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| JKV47_RS02995 (604746) | 604746..606080 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| JKV47_RS03000 (606160) | 606160..608307 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| JKV47_RS03005 (608366) | 608366..609823 | + | 1458 | WP_000856841.1 | dipeptide/tripeptide permease DtpC | - |
| JKV47_RS03010 (610060) | 610060..611577 | + | 1518 | WP_001295090.1 | lysine--tRNA ligase | - |
| JKV47_RS03015 (611696) | 611696..611869 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| JKV47_RS03020 (611897) | 611897..612193 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| JKV47_RS03025 (612420) | 612420..612659 | - | 240 | WP_072000625.1 | GNAT family N-acetyltransferase | - |
| JKV47_RS03035 (613481) | 613481..613711 | - | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
| JKV47_RS03040 (613892) | 613892..615523 | + | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| JKV47_RS03045 (615520) | 615520..616239 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.004 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.004 |