MGE detailed information
MGE type: Prophage MGE length: 33945 bp
Accession: NZ_CP068680 Location: 3341291..3375235 Organism: Escherichia coli strain NCCP12480 Replicon: chromosome
Accession: NZ_CP068680 Location: 3341291..3375235 Organism: Escherichia coli strain NCCP12480 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKV47_RS16070 (3337190) | 3337190..3338410 | + | 1221 | WP_235144895.1 | DNA-binding transcriptional repressor Mlc | - |
| JKV47_RS16075 (3338535) | 3338535..3339230 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| JKV47_RS16080 (3339183) | 3339183..3340475 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| JKV47_RS16085 (3340634) | 3340634..3341248 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| JKV47_RS16090 (3341291) | 3341291..3342145 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| JKV47_RS16095 (3342147) | 3342147..3342764 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| JKV47_RS16100 (3342775) | 3342775..3345198 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| JKV47_RS16105 (3345259) | 3345259..3347685 | - | 2427 | WP_000041695.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| JKV47_RS16110 (3347884) | 3347884..3348189 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| JKV47_RS16115 (3348297) | 3348297..3349007 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| JKV47_RS16120 (3349010) | 3349010..3349570 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| JKV47_RS16125 (3349605) | 3349605..3349946 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| JKV47_RS16130 (3350081) | 3350081..3350407 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| JKV47_RS16135 (3350613) | 3350613..3351827 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| JKV47_RS16140 (3351839) | 3351839..3352858 | + | 1020 | WP_000836067.1 | Zn-dependent oxidoreductase | - |
| JKV47_RS16145 (3353046) | 3353046..3353840 | - | 795 | WP_000183252.1 | site-specific integrase | - |
| JKV47_RS16150 (3354229) | 3354229..3354374 | + | 146 | Protein_3139 | dicB transcriptional regulator DicC | - |
| JKV47_RS16155 (3354358) | 3354358..3354879 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| JKV47_RS16160 (3354860) | 3354860..3355825 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| JKV47_RS16165 (3355914) | 3355914..3356288 | + | 375 | WP_000229985.1 | DUF977 family protein | - |
| JKV47_RS16170 (3356285) | 3356285..3356774 | + | 490 | Protein_3143 | class I SAM-dependent methyltransferase | - |
| JKV47_RS16175 (3357252) | 3357252..3357673 | + | 422 | Protein_3144 | hypothetical protein | - |
| JKV47_RS16180 (3358329) | 3358329..3359351 | + | 1023 | Protein_3145 | ISNCY family transposase | - |
| JKV47_RS16185 (3359472) | 3359472..3359621 | + | 150 | WP_011443592.1 | protein YdfW | - |
| JKV47_RS16190 (3360058) | 3360058..3360390 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| JKV47_RS16195 (3360593) | 3360593..3360898 | - | 306 | WP_001326990.1 | protein YdfV | - |
| JKV47_RS16200 (3360923) | 3360923..3361162 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| JKV47_RS16205 (3361162) | 3361162..3361449 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| JKV47_RS16210 (3361521) | 3361521..3361676 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JKV47_RS16215 (3361860) | 3361860..3362120 | + | 261 | Protein_3152 | antitermination protein | - |
| JKV47_RS16220 (3362398) | 3362398..3362487 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| JKV47_RS16225 (3362542) | 3362542..3362754 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| JKV47_RS16230 (3363055) | 3363055..3363270 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| JKV47_RS16235 (3363634) | 3363634..3363804 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| JKV47_RS16240 (3364024) | 3364024..3364239 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| JKV47_RS16245 (3364244) | 3364244..3364555 | + | 312 | WP_000189910.1 | YdfR family protein | - |
| JKV47_RS16250 (3364552) | 3364552..3365085 | + | 534 | WP_001092971.1 | lysozyme | - |
| JKV47_RS16255 (3365082) | 3365082..3365579 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| JKV47_RS16260 (3365942) | 3365942..3366154 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| JKV47_RS16265 (3366165) | 3366165..3366353 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| JKV47_RS16270 (3366356) | 3366356..3366421 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| JKV47_RS16275 (3366501) | 3366501..3366656 | + | 156 | WP_001309517.1 | protein YnfN | - |
| JKV47_RS16280 (3366828) | 3366828..3367001 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| JKV47_RS16285 (3367153) | 3367153..3367563 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| JKV47_RS16290 (3367621) | 3367621..3367854 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| JKV47_RS16295 (3368243) | 3368243..3368788 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| JKV47_RS16300 (3368763) | 3368763..3369698 | + | 936 | Protein_3169 | phage terminase large subunit family protein | - |
| JKV47_RS16305 (3369692) | 3369692..3370186 | + | 495 | Protein_3170 | phage tail protein | - |
| JKV47_RS16310 (3370183) | 3370183..3370398 | + | 216 | Protein_3171 | phage minor tail U family protein | - |
| JKV47_RS16315 (3370504) | 3370504..3371352 | + | 849 | WP_235144927.1 | phage tail protein | - |
| JKV47_RS16320 (3371352) | 3371352..3371927 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| JKV47_RS16325 (3372025) | 3372025..3372615 | - | 591 | WP_000078177.1 | recombinase family protein | - |
| JKV47_RS16330 (3372932) | 3372932..3373165 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| JKV47_RS16335 (3373234) | 3373234..3373347 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| JKV47_RS16340 (3373868) | 3373868..3375235 | + | 1368 | Protein_3177 | MHS family MFS transporter | - |
| JKV47_RS16345 (3375324) | 3375324..3376784 | + | 1461 | WP_000527825.1 | mannitol dehydrogenase family protein | - |
| JKV47_RS16350 (3376820) | 3376820..3377023 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| JKV47_RS16355 (3377200) | 3377200..3377886 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| JKV47_RS16360 (3377975) | 3377975..3378721 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|