MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 86558 bp
Accession: NZ_CP068651 Location: 1..86558 Organism: Vibrio parahaemolyticus strain TJ-187 Replicon: plasmid pTJ187-3
Accession: NZ_CP068651 Location: 1..86558 Organism: Vibrio parahaemolyticus strain TJ-187 Replicon: plasmid pTJ187-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHS88_RS25135 (JHS88_25110) | 677..991 | - | 315 | WP_237305263.1 | hypothetical protein | - |
| JHS88_RS25140 (JHS88_25115) | 995..1915 | + | 921 | WP_010446562.1 | IS5 family transposase ISVa2 | Transposase |
| JHS88_RS25145 (JHS88_25120) | 2020..2940 | - | 921 | WP_010446562.1 | IS5 family transposase ISVa2 | Transposase |
| JHS88_RS25150 (JHS88_25125) | 3037..3606 | - | 570 | WP_021821912.1 | Thermostable direct hemolysin 2 | VF |
| JHS88_RS25155 (JHS88_25130) | 4033..4881 | - | 849 | WP_021821911.1 | helix-turn-helix transcriptional regulator | - |
| JHS88_RS25160 (JHS88_25135) | 5028..5654 | - | 627 | WP_021821910.1 | ATP-binding cassette domain-containing protein | - |
| JHS88_RS25165 (JHS88_25140) | 5651..6376 | - | 726 | WP_237305264.1 | ATP-binding cassette domain-containing protein | - |
| JHS88_RS25170 (JHS88_25145) | 6331..7131 | - | 801 | WP_029804800.1 | ABC transporter permease | - |
| JHS88_RS25175 (JHS88_25150) | 7148..8116 | - | 969 | WP_225868828.1 | ABC transporter permease | - |
| JHS88_RS25180 (JHS88_25155) | 8107..9645 | - | 1539 | WP_029804802.1 | ABC transporter substrate-binding protein | - |
| JHS88_RS25185 (JHS88_25160) | 10051..10893 | + | 843 | WP_025537106.1 | urease accessory protein UreD | - |
| JHS88_RS25190 (JHS88_25165) | 10911..11213 | + | 303 | WP_005499469.1 | Urease subunit gamma | VF |
| JHS88_RS25195 (JHS88_25170) | 11224..11547 | + | 324 | WP_005499468.1 | Urease subunit beta | VF |
| JHS88_RS25200 (JHS88_25175) | 11544..13247 | + | 1704 | WP_005499467.1 | Urease subunit alpha | VF |
| JHS88_RS25205 (JHS88_25180) | 13302..13781 | + | 480 | WP_025537107.1 | urease accessory protein UreE | - |
| JHS88_RS25210 (JHS88_25185) | 13809..14474 | + | 666 | WP_020842398.1 | urease accessory protein UreF | - |
| JHS88_RS25215 (JHS88_25190) | 14483..15121 | + | 639 | WP_020842397.1 | Urease accessory protein UreG | VF |
| JHS88_RS25220 (JHS88_25195) | 16418..16767 | - | 350 | Protein_18 | IS91 family transposase | - |
| JHS88_RS25225 (JHS88_25200) | 16879..17745 | + | 867 | WP_140391852.1 | hypothetical protein | - |
| JHS88_RS25230 (JHS88_25205) | 17940..18560 | + | 621 | WP_140391890.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| JHS88_RS25235 (JHS88_25210) | 18564..21560 | + | 2997 | WP_140391851.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| JHS88_RS25240 (JHS88_25215) | 21590..22165 | - | 576 | Protein_22 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| JHS88_RS25245 (JHS88_25220) | 22498..22752 | + | 255 | WP_005526636.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| JHS88_RS25250 (JHS88_25225) | 22745..23014 | + | 270 | WP_140220082.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| JHS88_RS25255 (JHS88_25230) | 23532..23801 | + | 270 | WP_140220080.1 | IS110 family transposase ISMlo3 | Transposase |
| JHS88_RS25260 (JHS88_25235) | 23831..24514 | - | 684 | WP_140220078.1 | IS6 family transposase ISSba18 | Transposase |
| JHS88_RS25265 (JHS88_25240) | 24584..25402 | + | 819 | Protein_27 | IS3 family transposase ISAs9 | Transposase |
| JHS88_RS25270 (JHS88_25245) | 25565..25999 | - | 435 | WP_140220074.1 | hypothetical protein | - |
| JHS88_RS25275 (JHS88_25250) | 26079..26291 | - | 213 | WP_140220072.1 | hypothetical protein | - |
| JHS88_RS25280 (JHS88_25255) | 26447..26647 | + | 201 | Protein_30 | recombinase family protein | - |
| JHS88_RS25285 (JHS88_25260) | 26657..28522 | - | 1866 | Protein_31 | Tn3 family transposase ISEc63 | Transposase |
| JHS88_RS25290 (JHS88_25265) | 28680..29228 | + | 549 | WP_140392098.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| JHS88_RS25295 (JHS88_25270) | 29370..33224 | + | 3855 | WP_180926510.1 | Ig-like domain-containing protein | - |
| JHS88_RS25300 (JHS88_25275) | 33332..33983 | + | 652 | Protein_34 | IS6 family transposase ISSba18 | Transposase |
| JHS88_RS25305 (JHS88_25280) | 34106..35116 | + | 1011 | WP_078231290.1 | LacI family DNA-binding transcriptional regulator | - |
| JHS88_RS25310 (JHS88_25285) | 35254..36729 | + | 1476 | WP_078231291.1 | Na+/H+ antiporter NhaC | - |
| JHS88_RS25315 (JHS88_25290) | 36742..37902 | + | 1161 | WP_078231292.1 | MalY/PatB family protein | - |
| JHS88_RS25320 (JHS88_25295) | 38187..38871 | - | 685 | Protein_38 | IS6 family transposase ISSba18 | Transposase |
| JHS88_RS25325 (JHS88_25300) | 38916..39065 | - | 150 | WP_176133574.1 | hypothetical protein | - |
| JHS88_RS25330 (JHS88_25305) | 39273..40292 | + | 1020 | WP_193291339.1 | IS110 family transposase ISSpe2 | Transposase |
| JHS88_RS25335 (JHS88_25310) | 40723..41325 | + | 603 | WP_176133577.1 | transglutaminase-like cysteine peptidase | - |
| JHS88_RS25340 | 41422..41520 | + | 99 | Protein_42 | IS5/IS1182 family transposase | - |
| JHS88_RS25345 (JHS88_25315) | 42231..42488 | + | 258 | WP_237305257.1 | transposase zinc-binding domain-containing protein | - |
| JHS88_RS25350 (JHS88_25320) | 42509..43190 | + | 682 | Protein_44 | IS6 family transposase ISSba18 | Transposase |
| JHS88_RS25355 (JHS88_25325) | 43218..43427 | + | 210 | Protein_45 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JHS88_RS25360 (JHS88_25330) | 44360..47743 | - | 3384 | WP_140220088.1 | Ig-like domain-containing protein | - |
| JHS88_RS25365 (JHS88_25335) | 47760..48860 | - | 1101 | WP_140220086.1 | Outer membrane protein A | VF |
| JHS88_RS25370 | 49136..49258 | + | 123 | Protein_48 | IS6 family transposase | - |
| JHS88_RS25375 (JHS88_25340) | 49586..49873 | - | 288 | WP_140220084.1 | NadS family protein | - |
| JHS88_RS25380 (JHS88_25345) | 49876..50127 | - | 252 | Protein_50 | hypothetical protein | - |
| JHS88_RS25385 (JHS88_25350) | 50632..52212 | + | 1581 | WP_140391888.1 | hypothetical protein | - |
| JHS88_RS25390 (JHS88_25355) | 52683..52982 | + | 300 | WP_140391887.1 | type II toxin-antitoxin system HigB family toxin | - |
| JHS88_RS25395 (JHS88_25360) | 52995..53363 | + | 369 | WP_140391886.1 | DNA-binding protein | - |
| JHS88_RS25400 (JHS88_25365) | 53375..53599 | + | 225 | WP_140391885.1 | hypothetical protein | - |
| JHS88_RS25405 (JHS88_25370) | 53630..53893 | + | 264 | WP_140391884.1 | hypothetical protein | - |
| JHS88_RS25410 (JHS88_25375) | 53900..54625 | - | 726 | WP_140391883.1 | GNAT family N-acetyltransferase | - |
| JHS88_RS25415 (JHS88_25380) | 54643..55227 | - | 585 | WP_140391882.1 | DUF2913 family protein | - |
| JHS88_RS25420 | 55825..57519 | + | 1695 | WP_219628325.1 | DUF3560 domain-containing protein | - |
| JHS88_RS25425 (JHS88_25395) | 58342..58554 | + | 213 | WP_140391881.1 | hypothetical protein | - |
| JHS88_RS25430 (JHS88_25400) | 58613..59041 | + | 429 | WP_140391880.1 | hypothetical protein | - |
| JHS88_RS25435 (JHS88_25405) | 59057..59503 | + | 447 | WP_140391879.1 | hypothetical protein | - |
| JHS88_RS25440 (JHS88_25410) | 59584..59856 | + | 273 | WP_140391878.1 | hypothetical protein | - |
| JHS88_RS25445 (JHS88_25415) | 59895..60920 | - | 1026 | WP_140391877.1 | type IV secretion system protein | - |
| JHS88_RS25450 (JHS88_25420) | 60920..61654 | - | 735 | WP_140391876.1 | Type IV secretion system protein virB5 | VF |
| JHS88_RS25455 (JHS88_25425) | 61666..62064 | - | 399 | WP_237305256.1 | hypothetical protein | - |
| JHS88_RS25460 (JHS88_25430) | 62190..62882 | - | 693 | WP_140391875.1 | StbB family protein | - |
| JHS88_RS25465 (JHS88_25435) | 62882..63409 | - | 528 | WP_140391874.1 | hypothetical protein | - |
| JHS88_RS25470 (JHS88_25440) | 63726..66671 | - | 2946 | WP_237305261.1 | relaxase | - |
| JHS88_RS25475 (JHS88_25445) | 66847..67197 | - | 351 | WP_140391872.1 | hypothetical protein | Relaxase |
| JHS88_RS25480 (JHS88_25450) | 67228..67644 | - | 417 | WP_237305255.1 | conjugal transfer protein | - |
| JHS88_RS25485 (JHS88_25455) | 67647..68198 | - | 552 | WP_140391871.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| JHS88_RS25490 (JHS88_25460) | 68255..70255 | - | 2001 | WP_140391870.1 | DNA topoisomerase III | - |
| JHS88_RS25495 (JHS88_25465) | 70371..70514 | - | 144 | WP_180926494.1 | hypothetical protein | - |
| JHS88_RS25500 (JHS88_25470) | 70535..72442 | - | 1908 | WP_140391869.1 | Protein VirD4 | VF |
| JHS88_RS25505 (JHS88_25475) | 72432..72710 | - | 279 | WP_140391868.1 | hypothetical protein | - |
| JHS88_RS25510 (JHS88_25480) | 72725..73753 | - | 1029 | WP_140391867.1 | Type IV secretion system protein VirB11 | VF |
| JHS88_RS25515 (JHS88_25485) | 73754..74929 | - | 1176 | WP_140391866.1 | Type IV secretion system protein virB10 | VF |
| JHS88_RS25520 (JHS88_25490) | 74932..75813 | - | 882 | WP_140391865.1 | Type IV secretion system protein virB9 | VF |
| JHS88_RS25525 (JHS88_25495) | 75826..76515 | - | 690 | WP_140391864.1 | Type IV secretion system protein virB8 | VF |
| JHS88_RS25660 | 76502..76624 | - | 123 | WP_256896387.1 | hypothetical protein | - |
| JHS88_RS25530 (JHS88_25500) | 76628..79066 | - | 2439 | WP_140391863.1 | Type IV secretion system protein virB4 | VF |
| JHS88_RS25535 (JHS88_25505) | 79070..79375 | - | 306 | WP_140391862.1 | Type IV secretion system protein virB3 | VF |
| JHS88_RS25540 (JHS88_25510) | 79427..79726 | - | 300 | WP_140391861.1 | Type IV secretion system protein PtlA | VF |
| JHS88_RS25545 (JHS88_25515) | 79853..80038 | - | 186 | WP_140391860.1 | TraY domain-containing protein | - |
| JHS88_RS25550 (JHS88_25520) | 80060..80554 | - | 495 | WP_140391859.1 | hypothetical protein | - |
| JHS88_RS25555 (JHS88_25525) | 80691..80837 | + | 147 | WP_180926493.1 | hypothetical protein | - |
| JHS88_RS25560 (JHS88_25530) | 80952..81584 | + | 633 | WP_140391858.1 | IS21 family transposase ISVapa2 | Transposase |
| JHS88_RS25565 (JHS88_25535) | 82012..82911 | + | 900 | WP_140391857.1 | hypothetical protein | - |
| JHS88_RS25570 (JHS88_25540) | 83644..84108 | - | 465 | WP_023625101.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| JHS88_RS25575 (JHS88_25545) | 84108..84290 | - | 183 | WP_140391856.1 | hypothetical protein | - |
| JHS88_RS25580 (JHS88_25550) | 84578..85117 | + | 540 | WP_023625103.1 | ParA family protein | - |
| JHS88_RS25585 (JHS88_25555) | 85117..85446 | + | 330 | WP_140303232.1 | hypothetical protein | - |
| JHS88_RS25590 (JHS88_25560) | 85795..85989 | + | 195 | WP_140391855.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|