MGE detailed information
MGE type: Prophage MGE length: 52854 bp
Accession: NZ_CP068283 Location: 1414438..1467291 Organism: Escherichia coli strain CY598 Replicon: chromosome
Accession: NZ_CP068283 Location: 1414438..1467291 Organism: Escherichia coli strain CY598 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JI738_RS07035 (1409651) | 1409651..1410439 | + | 789 | WP_000690229.1 | sugar phosphate isomerase/epimerase | - |
| JI738_RS07040 (1410449) | 1410449..1411504 | + | 1056 | WP_001395397.1 | Gfo/Idh/MocA family oxidoreductase | - |
| JI738_RS07045 (1411501) | 1411501..1413768 | + | 2268 | WP_000198036.1 | kojibiose phosphorylase | - |
| JI738_RS07050 (1413765) | 1413765..1414424 | + | 660 | WP_000775794.1 | beta-phosphoglucomutase | - |
| JI738_RS07055 (1414438) | 1414438..1415519 | + | 1082 | Protein_1379 | hypothetical protein | VF |
| JI738_RS07060 (1415564) | 1415564..1416469 | + | 906 | WP_000735257.1 | monomeric porin OmpG | - |
| JI738_RS07065 (1416580) | 1416580..1417578 | - | 999 | WP_000075375.1 | LacI family DNA-binding transcriptional regulator | - |
| JI738_RS07070 (1417734) | 1417734..1419131 | + | 1398 | WP_000825775.1 | YcjX family protein | - |
| JI738_RS07075 (1419128) | 1419128..1420189 | + | 1062 | WP_000138728.1 | YcjF family protein | - |
| JI738_RS07080 (1420337) | 1420337..1421878 | + | 1542 | WP_001300658.1 | hypothetical protein | VF |
| JI738_RS07085 (1421922) | 1421922..1422428 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| JI738_RS07090 (1422547) | 1422547..1423512 | + | 966 | WP_001261211.1 | L-Ala-D/L-Glu epimerase | - |
| JI738_RS07095 (1423487) | 1423487..1424215 | - | 729 | WP_000219122.1 | murein tripeptide amidase MpaA | - |
| JI738_RS07100 (1424342) | 1424342..1424479 | - | 138 | Protein_1388 | NAD-dependent dehydratase | - |
| JI738_RS07105 (1424550) | 1424550..1425470 | - | 921 | WP_001300523.1 | alpha/beta hydrolase | - |
| JI738_RS07110 (1425608) | 1425608..1426507 | + | 900 | WP_000817708.1 | hypothetical protein | VF |
| JI738_RS07115 (1426844) | 1426844..1428457 | + | 1614 | WP_000683020.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| JI738_RS07120 (1428508) | 1428508..1429539 | - | 1032 | WP_000559900.1 | low conductance mechanosensitive channel YnaI | - |
| JI738_RS07125 (1429729) | 1429729..1430709 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| JI738_RS07130 (1430982) | 1430982..1431239 | + | 258 | WP_000605090.1 | DUF2534 family protein | - |
| JI738_RS07135 (1431289) | 1431289..1432239 | - | 951 | WP_001262123.1 | universal stress protein UspE | - |
| JI738_RS07140 (1432391) | 1432391..1433143 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| JI738_RS07145 (1433338) | 1433338..1433853 | - | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| JI738_RS07150 (1433864) | 1433864..1435390 | - | 1527 | WP_000062973.1 | p-aminobenzoyl-glutamate transporter | - |
| JI738_RS07155 (1435427) | 1435427..1436872 | - | 1446 | WP_001156451.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgB | - |
| JI738_RS07160 (1436872) | 1436872..1438182 | - | 1311 | WP_000444929.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgA | - |
| JI738_RS07165 (1438358) | 1438358..1439266 | + | 909 | WP_000885458.1 | LysR family transcriptional regulator | - |
| JI738_RS07170 (1439596) | 1439596..1440159 | + | 564 | WP_001046829.1 | DNA endonuclease SmrA | - |
| JI738_RS07175 (1440180) | 1440180..1441412 | - | 1233 | WP_000628058.1 | diguanylate cyclase DgcM | - |
| JI738_RS07180 (1441606) | 1441606..1441653 | + | 48 | WP_211180494.1 | protein YnaN | - |
| JI738_RS07185 (1441667) | 1441667..1442650 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| JI738_RS07190 (1443128) | 1443128..1444501 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| JI738_RS07195 (1444630) | 1444630..1445565 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| JI738_RS07200 (1445617) | 1445617..1446852 | - | 1236 | WP_000040852.1 | hypothetical protein ; Integrase | Integrase |
| JI738_RS07205 (1446854) | 1446854..1447069 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (1447173) | 1447173..1447351 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1447173) | 1447173..1447351 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1447173) | 1447173..1447351 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1447173) | 1447173..1447351 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| JI738_RS07210 (1447148) | 1447148..1447357 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| JI738_RS07215 (1447350) | 1447350..1447544 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| JI738_RS07220 (1447601) | 1447601..1448410 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| JI738_RS07225 (1448403) | 1448403..1451003 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| JI738_RS07230 (1451105) | 1451105..1451380 | - | 276 | WP_000632297.1 | protein RacC | - |
| JI738_RS07235 (1451455) | 1451455..1451625 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| JI738_RS07240 (1451625) | 1451625..1451846 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| JI738_RS07245 (1452288) | 1452288..1452776 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| JI738_RS07250 (1452773) | 1452773..1452928 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| JI738_RS23310 (1452939) | 1452939..1453073 | - | 135 | WP_000233809.1 | phage protein | - |
| JI738_RS07255 (1453382) | 1453382..1453858 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| JI738_RS07260 (1453982) | 1453982..1454278 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| JI738_RS07265 (1454301) | 1454301..1454723 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| JI738_RS07270 (1454736) | 1454736..1455593 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| JI738_RS07275 (1455600) | 1455600..1456346 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| JI738_RS07280 (1456369) | 1456369..1456821 | + | 453 | Protein_1425 | DUF1627 domain-containing protein | - |
| JI738_RS07285 (1457017) | 1457017..1457202 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| JI738_RS07290 (1457399) | 1457399..1458856 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| JI738_RS07295 (1458994) | 1458994..1459257 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| JI738_RS07300 (1459238) | 1459238..1459597 | + | 360 | WP_000091628.1 | protein YdaY | - |
| JI738_RS07305 (1460071) | 1460071..1461003 | + | 933 | Protein_1430 | phage tail length tape measure family protein | - |
| JI738_RS07310 (1461006) | 1461006..1461221 | + | 216 | Protein_1431 | Ail/Lom family outer membrane beta-barrel protein | - |
| JI738_RS07315 (1461363) | 1461363..1462343 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| JI738_RS07320 (1462413) | 1462413..1462601 | + | 189 | Protein_1433 | Ail/Lom family outer membrane beta-barrel protein | - |
| JI738_RS07325 (1462666) | 1462666..1466028 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| JI738_RS07330 (1466028) | 1466028..1466603 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| JI738_RS07335 (1466701) | 1466701..1467291 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| JI738_RS07340 (1467608) | 1467608..1467841 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| JI738_RS07345 (1467910) | 1467910..1468023 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| JI738_RS07350 (1468802) | 1468802..1469236 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| JI738_RS07355 (1469377) | 1469377..1470510 | - | 1134 | WP_000837921.1 | porin OmpN | - |
| JI738_RS07360 (1470644) | 1470644..1471624 | + | 981 | WP_000019403.1 | IS5-like element IS5 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|