MGE detailed information
MGE type: Prophage MGE length: 82254 bp
Accession: NZ_CP068090 Location: 4175367..4257620 Organism: Shigella boydii strain FDAARGOS_1139 Replicon: chromosome
Accession: NZ_CP068090 Location: 4175367..4257620 Organism: Shigella boydii strain FDAARGOS_1139 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I96_RS20865 () | 4170616..4171359 | - | 744 | WP_004983079.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| I6I96_RS20870 () | 4171356..4171900 | - | 545 | Protein_4054 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| I6I96_RS20875 () | 4172034..4172471 | - | 438 | WP_000849049.1 | hypothetical protein | - |
| I6I96_RS20880 () | 4172632..4173800 | + | 1169 | WP_135186312.1 | IS3 family transposase | - |
| I6I96_RS20885 () | 4174205..4175116 | - | 912 | WP_024258032.1 | regulatory protein PocR | - |
| I6I96_RS20890 () | 4175173..4175870 | + | 698 | Protein_4058 | IS1 family transposase IS1X2 | Transposase |
| I6I96_RS20895 () | 4175863..4176276 | + | 414 | WP_114142276.1 | immunoglobulin domain-containing protein | - |
| I6I96_RS20900 () | 4176291..4176665 | + | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| I6I96_RS20905 () | 4176761..4176970 | + | 210 | WP_128566924.1 | DUF4035 domain-containing protein | - |
| I6I96_RS20910 () | 4177018..4177278 | + | 261 | WP_000224021.1 | hypothetical protein | - |
| I6I96_RS20915 () | 4177413..4179014 | - | 1602 | WP_004983128.1 | IS66 family transposase ISEc49 | Transposase |
| I6I96_RS20920 () | 4179021..4179413 | - | 393 | WP_000950649.1 | IS66 family transposase ISEc49 | Transposase |
| I6I96_RS20925 () | 4179400..4179729 | - | 330 | WP_000042910.1 | IS66 family transposase ISEc49 | Transposase |
| I6I96_RS20930 () | 4179774..4183034 | + | 3261 | Protein_4066 | phage tail tape measure protein | - |
| I6I96_RS20935 () | 4183027..4183368 | + | 342 | WP_000807924.1 | phage tail protein | - |
| I6I96_RS20940 () | 4183368..4184066 | + | 699 | WP_004983175.1 | phage minor tail protein L | - |
| I6I96_RS20945 () | 4184077..4184820 | + | 744 | WP_004983163.1 | C40 family peptidase | - |
| I6I96_RS20950 () | 4184718..4185398 | + | 681 | WP_012602254.1 | tail assembly protein | - |
| I6I96_RS20955 () | 4185639..4189112 | + | 3474 | WP_000515059.1 | host specificity protein J | - |
| I6I96_RS20960 () | 4189180..4189779 | + | 600 | WP_001233068.1 | Outer membrane protein X | VF |
| I6I96_RS20965 () | 4189844..4191251 | + | 1408 | Protein_4073 | prophage tail fiber N-terminal domain-containing protein | - |
| I6I96_RS20970 () | 4191337..4191828 | + | 492 | WP_135186311.1 | hypothetical protein | - |
| I6I96_RS20975 () | 4191880..4193093 | + | 1214 | WP_134810244.1 | IS3 family transposase IS629 | Transposase |
| I6I96_RS20980 () | 4193238..4193450 | + | 213 | WP_001114260.1 | DUF4376 domain-containing protein | - |
| I6I96_RS20985 () | 4193592..4193916 | - | 325 | Protein_4077 | YkgJ family cysteine cluster protein | - |
| I6I96_RS20990 () | 4194052..4194300 | - | 249 | WP_001217553.1 | DinI-like family protein | - |
| I6I96_RS20995 () | 4194655..4195002 | - | 348 | Protein_4079 | hydrolase | - |
| I6I96_RS21000 () | 4195029..4196225 | - | 1197 | WP_004983157.1 | IS110 family transposase ISEc20 | Transposase |
| I6I96_RS21005 () | 4196417..4196671 | - | 255 | WP_000891627.1 | isochorismatase family protein | - |
| I6I96_RS21010 () | 4196981..4198753 | + | 1773 | WP_001258662.1 | aspartate--tRNA ligase | - |
| I6I96_RS21015 () | 4198871..4199323 | + | 453 | WP_011379170.1 | dihydroneopterin triphosphate diphosphatase | - |
| I6I96_RS21020 () | 4199352..4200092 | + | 741 | WP_000907252.1 | putative transcriptional regulatory protein YebC | VF |
| I6I96_RS21025 () | 4200127..4200648 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| I6I96_RS21030 () | 4200801..4201969 | + | 1169 | WP_135186310.1 | IS3 family transposase ISLad1 | Transposase |
| I6I96_RS21035 () | 4202056..4202451 | - | 396 | Protein_4087 | IS1 family transposase IS1X2 | Transposase |
| I6I96_RS21045 () | 4203782..4204089 | - | 308 | Protein_4089 | IS1 family transposase | - |
| I6I96_RS21050 () | 4204281..4204346 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| I6I96_RS21055 () | 4204485..4205096 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| I6I96_RS21060 () | 4205105..4206115 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| I6I96_RS21065 () | 4206165..4206950 | - | 786 | WP_000571484.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| I6I96_RS21070 () | 4206947..4207702 | - | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| I6I96_RS21075 () | 4207781..4208713 | + | 933 | WP_004983046.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| I6I96_RS21080 () | 4208729..4210051 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| I6I96_RS21085 () | 4210171..4211142 | + | 972 | WP_000448395.1 | Lipid A biosynthesis myristoyltransferase | VF |
| I6I96_RS21090 () | 4211231..4212874 | - | 1644 | Protein_4098 | alpha-mannosidase | - |
| I6I96_RS21095 () | 4212931..4213628 | + | 698 | Protein_4099 | IS1 family transposase IS1X2 | Transposase |
| I6I96_RS21100 () | 4213646..4213885 | - | 240 | Protein_4100 | ATP-binding cassette domain-containing protein | - |
| I6I96_RS21105 () | 4213908..4214605 | - | 698 | Protein_4101 | IS1 family transposase IS1X2 | Transposase |
| I6I96_RS21110 () | 4214789..4215235 | - | 447 | WP_004982928.1 | YcgN family cysteine cluster protein | - |
| I6I96_RS21115 () | 4215327..4215986 | - | 660 | WP_000284277.1 | fumarylacetoacetate hydrolase family protein | - |
| I6I96_RS21120 () | 4216058..4216351 | - | 294 | WP_001297679.1 | YcgL domain-containing protein | - |
| I6I96_RS21125 () | 4216593..4216949 | + | 357 | WP_000695219.1 | PPC domain-containing protein | - |
| I6I96_RS21130 () | 4216960..4217657 | - | 698 | Protein_4106 | IS1 family transposase IS1X2 | Transposase |
| I6I96_RS21135 () | 4217775..4217993 | + | 219 | WP_000456431.1 | hypothetical protein | - |
| I6I96_RS21140 () | 4218053..4219495 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| I6I96_RS21145 () | 4219623..4220225 | - | 603 | Protein_4109 | DNA-binding transcriptional regulator HexR | - |
| I6I96_RS21150 () | 4220272..4221485 | + | 1214 | WP_134810244.1 | IS3 family transposase IS629 | Transposase |
| I6I96_RS21155 () | 4221527..4221805 | - | 279 | Protein_4111 | DNA-binding transcriptional regulator HexR | - |
| I6I96_RS21160 () | 4222143..4223618 | + | 1476 | WP_000301720.1 | glucose-6-phosphate dehydrogenase | - |
| I6I96_RS21165 () | 4223853..4225664 | + | 1812 | WP_001069475.1 | phosphogluconate dehydratase | - |
| I6I96_RS21170 () | 4225701..4226342 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| I6I96_RS21175 () | 4226398..4227576 | - | 1179 | WP_000173497.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| I6I96_RS21180 () | 4227710..4228004 | + | 295 | Protein_4116 | DNA damage-inducible protein YebG | - |
| I6I96_RS21185 () | 4228071..4228427 | + | 357 | WP_001295500.1 | protein YebF | - |
| I6I96_RS21190 () | 4228754..4229413 | + | 660 | WP_000024738.1 | tellurite resistance TerB family protein | - |
| I6I96_RS21195 () | 4229622..4230608 | + | 987 | Protein_4119 | oligopeptidase B | - |
| I6I96_RS21205 () | 4231906..4232913 | + | 1008 | Protein_4121 | prolyl oligopeptidase family serine peptidase | - |
| I6I96_RS21210 () | 4232939..4234152 | + | 1214 | WP_134810244.1 | IS3 family transposase IS629 | Transposase |
| I6I96_RS21215 () | 4234259..4234921 | - | 663 | WP_000944260.1 | exodeoxyribonuclease X | - |
| I6I96_RS21220 () | 4234945..4235601 | - | 657 | WP_000011642.1 | carbon-nitrogen hydrolase family protein | - |
| I6I96_RS21225 () | 4235703..4235933 | - | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| I6I96_RS21230 () | 4236072..4236446 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6I96_RS21235 () | 4236450..4237317 | + | 868 | Protein_4127 | copper homeostasis membrane protein CopD | - |
| I6I96_RS21240 () | 4237330..4237671 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - () | 4237699..4237932 | - | 234 | - | - | Antitoxin Detail |
| - () | 4237828..4237931 | + | 104 | - | - | Toxin Detail |
| I6I96_RS21245 () | 4238053..4238580 | - | 528 | Protein_4129 | hypothetical protein ; Integrase | Integrase |
| I6I96_RS21255 () | 4240013..4241114 | + | 1102 | Protein_4131 | IS3 family transposase IS600 | Transposase |
| I6I96_RS21260 () | 4241213..4241662 | - | 450 | Protein_4132 | IS1 family transposase IS1X2 | Transposase |
| I6I96_RS21265 () | 4241809..4242936 | + | 1128 | WP_001063816.1 | IS110 family transposase ISSso6 | Transposase |
| I6I96_RS21270 () | 4243229..4244821 | - | 1593 | WP_001072385.1 | IS66 family transposase ISEc43 | Transposase |
| I6I96_RS21275 () | 4244852..4245202 | - | 351 | WP_000624671.1 | IS66 family transposase IS682 | Transposase |
| I6I96_RS21280 () | 4245199..4245618 | - | 420 | WP_000435414.1 | IS66 family transposase IS682 | Transposase |
| I6I96_RS21285 () | 4245704..4245811 | - | 108 | Protein_4137 | cell division inhibition protein DicB | - |
| I6I96_RS21290 () | 4245822..4246241 | - | 420 | WP_078163765.1 | hypothetical protein | - |
| I6I96_RS21295 () | 4247043..4247044 | - | 2 | WP_094096853.1 | IS3 family transposase ISSd1 | Transposase |
| I6I96_RS21300 () | 4247480..4247659 | + | 180 | WP_001039895.1 | hypothetical protein | - |
| I6I96_RS21305 () | 4247660..4249366 | - | 1707 | WP_024259619.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| I6I96_RS21310 () | 4249696..4249812 | + | 117 | WP_000087865.1 | IS3 family transposase ISSd1 | Transposase |
| I6I96_RS21315 () | 4249846..4250543 | + | 698 | Protein_4143 | IS1 family transposase IS1X2 | Transposase |
| I6I96_RS21320 () | 4250560..4251629 | + | 1070 | Protein_4144 | IS3 family transposase IS600 | Transposase |
| I6I96_RS21325 () | 4252161..4252817 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| I6I96_RS21330 () | 4252818..4253009 | - | 192 | WP_000457842.1 | YebW family protein | - |
| I6I96_RS21335 () | 4253114..4253350 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I6I96_RS21340 () | 4253468..4254907 | - | 1440 | WP_000057025.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6I96_RS21345 () | 4254987..4257620 | - | 2634 | WP_004983131.1 | hypothetical protein | VF |
| I6I96_RS21350 () | 4257589..4258872 | - | 1284 | WP_001397201.1 | membrane integrity lipid transport subunit YebS | - |
| I6I96_RS21355 () | 4259002..4259499 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| I6I96_RS21360 () | 4259596..4260294 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| I6I96_RS21365 () | 4260314..4262362 | + | 2049 | WP_001315679.1 | carboxy terminal-processing peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|