Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4237699..4237932 | Replicon | chromosome |
| Accession | NZ_CP068090 | ||
| Organism | Shigella boydii strain FDAARGOS_1139 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4237828..4237931 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4237699..4237932 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I96_RS21210 | 4232939..4234152 | + | 1214 | WP_134810244.1 | IS3 family transposase | - |
| I6I96_RS21215 | 4234259..4234921 | - | 663 | WP_000944260.1 | exodeoxyribonuclease X | - |
| I6I96_RS21220 | 4234945..4235601 | - | 657 | WP_000011642.1 | carbon-nitrogen hydrolase family protein | - |
| I6I96_RS21225 | 4235703..4235933 | - | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| I6I96_RS21230 | 4236072..4236446 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6I96_RS21235 | 4236450..4237317 | + | 868 | Protein_4127 | copper homeostasis membrane protein CopD | - |
| I6I96_RS21240 | 4237330..4237671 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 4237699..4237932 | - | 234 | - | - | Antitoxin |
| - | 4237828..4237931 | + | 104 | - | - | Toxin |
| I6I96_RS21245 | 4238053..4238580 | - | 528 | Protein_4129 | tyrosine-type recombinase/integrase | - |
| I6I96_RS21255 | 4240013..4241114 | + | 1102 | Protein_4131 | IS3 family transposase | - |
| I6I96_RS21260 | 4241213..4241662 | - | 450 | Protein_4132 | IS1 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 4175367..4257620 | 82253 | |
| - | inside | IScluster/Tn | - | ipaH9.8 | 4230633..4251629 | 20996 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T186611 NZ_CP068090:4237828-4237931 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT186611 NZ_CP068090:c4237932-4237699 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
