MGE detailed information
MGE type: Prophage MGE length: 52993 bp
Accession: NZ_CP068035 Location: 2671388..2724380 Organism: Escherichia coli strain U90 Replicon: chromosome
Accession: NZ_CP068035 Location: 2671388..2724380 Organism: Escherichia coli strain U90 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKF55_RS12790 () | 2667637..2670063 | - | 2427 | WP_000041558.1 | dimethyl sulfoxide reductase subunit A | - |
| JKF55_RS12795 () | 2670262..2670567 | - | 306 | WP_001307224.1 | DUF1161 domain-containing protein | - |
| JKF55_RS12800 () | 2670675..2671385 | + | 711 | WP_063102789.1 | YnfC family lipoprotein | - |
| JKF55_RS12805 () | 2671388..2671948 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| JKF55_RS12810 () | 2671983..2672324 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| JKF55_RS12815 () | 2672459..2672785 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| JKF55_RS12820 () | 2672991..2674205 | + | 1215 | WP_001460976.1 | starvation-sensing protein RspA | - |
| JKF55_RS12825 () | 2674217..2675236 | + | 1020 | WP_000836079.1 | Zn-dependent oxidoreductase | - |
| JKF55_RS12830 () | 2675294..2675404 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| JKF55_RS12835 () | 2675424..2676704 | - | 1281 | WP_000876958.1 | Holliday junction ATP-dependent DNA helicase RuvA ; Integrase | Integrase |
| JKF55_RS12840 () | 2676739..2676990 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| JKF55_RS12845 () | 2677063..2679534 | - | 2472 | WP_000048342.1 | exonuclease | - |
| JKF55_RS12850 () | 2679627..2679818 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| JKF55_RS12855 () | 2679815..2680003 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| JKF55_RS12860 () | 2680571..2680789 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| JKF55_RS12865 () | 2680949..2681104 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| JKF55_RS12870 () | 2681271..2681678 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| JKF55_RS12875 () | 2681762..2681992 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| JKF55_RS12880 () | 2681976..2682497 | + | 522 | WP_000705358.1 | hypothetical protein | - |
| JKF55_RS12885 () | 2682478..2683443 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| JKF55_RS12890 () | 2683484..2683906 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| JKF55_RS12895 () | 2683903..2684259 | + | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| JKF55_RS12900 () | 2684870..2685157 | + | 288 | Protein_2508 | hypothetical protein | - |
| JKF55_RS12905 () | 2685926..2687239 | + | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| JKF55_RS12910 () | 2687676..2688008 | - | 333 | WP_001301033.1 | protein FlxA | - |
| JKF55_RS12915 () | 2688211..2688516 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| JKF55_RS12920 () | 2688541..2688780 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| JKF55_RS12925 () | 2688780..2689067 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| JKF55_RS12930 () | 2689139..2689294 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JKF55_RS12935 () | 2689511..2689762 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| JKF55_RS12940 () | 2689829..2690107 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| JKF55_RS12945 () | 2690109..2691158 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| JKF55_RS12950 () | 2691172..2691924 | + | 753 | WP_001047135.1 | antitermination protein | - |
| JKF55_RS12955 () | 2692202..2692291 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| JKF55_RS12960 () | 2692346..2692558 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| JKF55_RS12965 () | 2692859..2693074 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| JKF55_RS12970 () | 2693828..2694043 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| JKF55_RS12975 () | 2694048..2694359 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| JKF55_RS12980 () | 2694356..2694889 | + | 534 | WP_001092971.1 | lysozyme | - |
| JKF55_RS12985 () | 2694886..2695383 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| JKF55_RS12990 () | 2695746..2695958 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| JKF55_RS12995 () | 2695969..2696157 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| JKF55_RS13000 () | 2696160..2696225 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| JKF55_RS13005 () | 2696305..2696460 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| JKF55_RS13010 () | 2696632..2696805 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| JKF55_RS13015 () | 2696957..2697366 | - | 410 | Protein_2531 | DUF1398 domain-containing protein | - |
| JKF55_RS13020 () | 2697424..2697657 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| JKF55_RS13025 () | 2698046..2698591 | + | 546 | WP_063102724.1 | DNA-packaging protein | - |
| JKF55_RS13030 () | 2698566..2700491 | + | 1926 | WP_001027321.1 | phage terminase large subunit family protein | - |
| JKF55_RS13035 () | 2700488..2700694 | + | 207 | WP_000198149.1 | gpW family protein | - |
| JKF55_RS13040 () | 2700691..2702292 | + | 1602 | WP_001345555.1 | phage portal protein | - |
| JKF55_RS13045 () | 2702273..2703592 | + | 1320 | WP_000123242.1 | S49 family peptidase | - |
| JKF55_RS13050 () | 2703602..2703934 | + | 333 | WP_001358225.1 | head decoration protein | - |
| JKF55_RS13055 () | 2703990..2705015 | + | 1026 | WP_000063254.1 | major capsid protein | - |
| JKF55_RS13060 () | 2705057..2705452 | + | 396 | WP_000158875.1 | DNA-packaging protein FI | - |
| JKF55_RS13065 () | 2705464..2705817 | + | 354 | WP_000785282.1 | head-tail joining protein | - |
| JKF55_RS13070 () | 2705829..2706407 | + | 579 | WP_000975081.1 | phage tail protein | - |
| JKF55_RS13075 () | 2706404..2706799 | + | 396 | WP_000683129.1 | phage minor tail U family protein | - |
| JKF55_RS13080 () | 2706807..2707547 | + | 741 | WP_001317730.1 | phage tail protein | - |
| JKF55_RS13085 () | 2707563..2707985 | + | 423 | WP_000479193.1 | phage minor tail protein G | - |
| JKF55_RS13090 () | 2707967..2708401 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| JKF55_RS13095 () | 2708394..2710955 | + | 2562 | WP_053292699.1 | phage tail tape measure protein | - |
| JKF55_RS13100 () | 2710952..2711281 | + | 330 | WP_000847351.1 | phage tail protein | - |
| JKF55_RS13105 () | 2711281..2711979 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| JKF55_RS13110 () | 2711985..2712728 | + | 744 | WP_001484131.1 | C40 family peptidase | - |
| JKF55_RS13115 () | 2712665..2713267 | + | 603 | WP_000090849.1 | tail assembly protein | - |
| JKF55_RS13120 () | 2713328..2716807 | + | 3480 | WP_100635158.1 | host specificity protein J | - |
| JKF55_RS13125 () | 2716875..2717474 | + | 600 | WP_053292719.1 | Erythronate-4-phosphate dehydrogenase | VF |
| JKF55_RS13130 () | 2717539..2720499 | + | 2961 | WP_100635157.1 | prophage tail fiber N-terminal domain-containing protein | - |
| JKF55_RS13135 () | 2720499..2721074 | + | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| JKF55_RS13140 () | 2721172..2721762 | - | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| JKF55_RS13145 () | 2722079..2722312 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| JKF55_RS13150 () | 2722381..2722494 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| JKF55_RS13155 () | 2723097..2724380 | + | 1284 | Protein_2559 | MHS family MFS transporter YdfJ | - |
| JKF55_RS13160 () | 2724469..2725929 | + | 1461 | WP_000527758.1 | mannitol dehydrogenase family protein | - |
| JKF55_RS13165 () | 2725965..2726168 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| JKF55_RS13170 () | 2726346..2727032 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| JKF55_RS13175 () | 2727121..2727867 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|