MGE detailed information
MGE type: Conjugative plasmid MGE length: 93938 bp
Accession: NZ_CP067398 Location: 1..93938 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 Replicon: plasmid psLT
Accession: NZ_CP067398 Location: 1..93938 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 Replicon: plasmid psLT
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB81_RS23130 (JJB81_23125) | 94..378 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| JJB81_RS23135 (JJB81_23130) | 391..546 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| JJB81_RS23140 (JJB81_23135) | 656..1222 | + | 567 | Protein_2 | phospholipase D family protein | - |
| JJB81_RS23145 (JJB81_23140) | 1333..1599 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| JJB81_RS23150 (JJB81_23145) | 1849..1926 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| JJB81_RS23155 (JJB81_23150) | 1907..2788 | + | 882 | WP_210138965.1 | incFII family plasmid replication initiator RepA | - |
| JJB81_RS23160 (JJB81_23155) | 3573..3869 | + | 297 | WP_254888533.1 | SdiA-regulated domain-containing protein | - |
| JJB81_RS23165 (JJB81_23160) | 3966..4724 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| JJB81_RS23170 (JJB81_23165) | 4991..5548 | - | 558 | WP_000725062.1 | Attachment invasion locus protein | VF |
| JJB81_RS23175 (JJB81_23170) | 5638..6537 | - | 900 | WP_210138966.1 | YjiK family protein | - |
| JJB81_RS23180 (JJB81_23175) | 6534..6680 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| JJB81_RS23185 (JJB81_23180) | 6670..7323 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| JJB81_RS23190 (JJB81_23185) | 7568..7918 | - | 351 | WP_001526811.1 | Transcriptional regulatory protein RcsB | VF |
| JJB81_RS23195 (JJB81_23190) | 7903..8115 | - | 213 | WP_000004313.1 | hypothetical protein | VF |
| JJB81_RS23200 (JJB81_23195) | 8547..9422 | - | 876 | WP_010999939.1 | membrane protein | - |
| JJB81_RS23205 (JJB81_23200) | 9675..10232 | - | 558 | WP_010999940.1 | membrane protein | - |
| JJB81_RS23210 (JJB81_23205) | 10247..10939 | - | 693 | WP_001038510.1 | Chaperone protein FaeE | VF |
| JJB81_RS23215 (JJB81_23210) | 10932..13340 | - | 2409 | WP_210138967.1 | Outer membrane usher protein FimD | VF |
| JJB81_RS23220 (JJB81_23215) | 13568..14086 | - | 519 | WP_000748205.1 | hypothetical protein | VF |
| JJB81_RS23225 (JJB81_23220) | 14361..14663 | - | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| JJB81_RS23230 (JJB81_23225) | 15382..15763 | + | 382 | Protein_20 | YgiW/YdeI family stress tolerance OB fold protein | - |
| JJB81_RS23235 (JJB81_23230) | 15932..16376 | + | 445 | Protein_21 | tyrosine-type recombinase/integrase | - |
| JJB81_RS23240 (JJB81_23235) | 16635..17624 | - | 990 | WP_210138968.1 | RepB family plasmid replication initiator protein | - |
| JJB81_RS23245 (JJB81_23240) | 18118..18414 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| JJB81_RS23895 | 18426..18854 | + | 429 | Protein_24 | hypothetical protein | - |
| JJB81_RS23250 (JJB81_23245) | 18898..19419 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| JJB81_RS23255 (JJB81_23250) | 20095..20313 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| JJB81_RS23260 (JJB81_23255) | 20315..20620 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| JJB81_RS23265 (JJB81_23260) | 20622..20912 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| JJB81_RS23270 (JJB81_23265) | 20909..21430 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| JJB81_RS23275 (JJB81_23270) | 21465..22247 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| JJB81_RS23280 (JJB81_23275) | 22256..22807 | + | 552 | WP_000545754.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| JJB81_RS23285 (JJB81_23280) | 22994..23482 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| JJB81_RS23290 (JJB81_23285) | 23476..23961 | + | 486 | WP_000905606.1 | membrane protein | - |
| JJB81_RS23295 (JJB81_23290) | 24238..24525 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| JJB81_RS23300 (JJB81_23295) | 24681..25241 | + | 561 | WP_000900095.1 | Invasin | VF |
| JJB81_RS23305 (JJB81_23300) | 25308..25658 | - | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| JJB81_RS23310 (JJB81_23305) | 25715..26139 | + | 425 | Protein_37 | IS200/IS605 family transposase | - |
| JJB81_RS23315 (JJB81_23310) | 26266..26916 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| JJB81_RS23320 (JJB81_23315) | 27177..27902 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| JJB81_RS23325 (JJB81_23320) | 28184..29959 | - | 1776 | WP_210138969.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| JJB81_RS23330 (JJB81_23325) | 30011..30178 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| JJB81_RS23335 (JJB81_23330) | 30141..30908 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| JJB81_RS23340 (JJB81_23335) | 31082..31246 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| JJB81_RS23345 (JJB81_23340) | 31420..32313 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| JJB81_RS23350 (JJB81_23345) | 32922..33959 | + | 1038 | WP_001121399.1 | IS630 family transposase ISEc33 | Transposase |
| JJB81_RS23355 (JJB81_23350) | 34148..35173 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| JJB81_RS23360 (JJB81_23355) | 35106..36770 | - | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| JJB81_RS23365 (JJB81_23360) | 36754..37314 | - | 561 | WP_001240331.1 | Tn3 family transposase ISPsy42 | Transposase |
| JJB81_RS23370 (JJB81_23365) | 37521..38261 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| JJB81_RS23375 (JJB81_23370) | 38916..39404 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| JJB81_RS23380 (JJB81_23375) | 39663..40778 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| JJB81_RS23385 (JJB81_23380) | 40864..41280 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| JJB81_RS23390 (JJB81_23385) | 41383..41799 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| JJB81_RS23395 (JJB81_23390) | 41856..42457 | + | 602 | Protein_54 | DUF2913 family protein | - |
| JJB81_RS23400 (JJB81_23395) | 42454..43395 | - | 942 | WP_000728917.1 | Recombination-promoting nuclease RpnA | VF |
| JJB81_RS23405 (JJB81_23400) | 43810..45015 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| JJB81_RS23410 (JJB81_23405) | 45015..45989 | + | 975 | WP_000064274.1 | ParB family protein | - |
| JJB81_RS23415 (JJB81_23410) | 46071..47345 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| JJB81_RS23420 (JJB81_23415) | 47345..47767 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JJB81_RS23425 (JJB81_23420) | 48278..48748 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| JJB81_RS23430 (JJB81_23425) | 48741..49097 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| JJB81_RS23900 | 49035..49316 | - | 282 | WP_146671468.1 | hypothetical protein | - |
| JJB81_RS23435 (JJB81_23430) | 49479..50159 | + | 681 | WP_000088645.1 | DNA methylase | - |
| JJB81_RS23440 (JJB81_23435) | 50159..50380 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| JJB81_RS23445 (JJB81_23440) | 50436..50849 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| JJB81_RS23450 (JJB81_23445) | 50921..51685 | + | 765 | WP_001246548.1 | membrane protein | - |
| JJB81_RS23455 (JJB81_23450) | 52181..52615 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| JJB81_RS23460 (JJB81_23455) | 52682..53116 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| JJB81_RS23465 (JJB81_23460) | 53352..53675 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| JJB81_RS23470 (JJB81_23465) | 53639..53806 | + | 168 | WP_154074060.1 | hypothetical protein | - |
| JJB81_RS23475 (JJB81_23470) | 54400..54918 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| JJB81_RS23480 (JJB81_23475) | 54973..55215 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| JJB81_RS23485 (JJB81_23480) | 55284..57281 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| JJB81_RS23490 (JJB81_23485) | 57321..57755 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| JJB81_RS23495 (JJB81_23490) | 57752..58489 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| JJB81_RS23960 | 58524..58652 | + | 129 | WP_000372429.1 | hypothetical protein | - |
| JJB81_RS23500 (JJB81_23495) | 58738..58896 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| JJB81_RS23505 (JJB81_23500) | 58999..59817 | + | 819 | Protein_78 | DUF932 domain-containing protein | - |
| JJB81_RS23510 (JJB81_23505) | 60128..60598 | - | 471 | WP_001526856.1 | hypothetical protein | VF |
| JJB81_RS23515 (JJB81_23510) | 61013..61393 | + | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| JJB81_RS23520 (JJB81_23515) | 61586..62272 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| JJB81_RS23525 (JJB81_23520) | 62366..62593 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| JJB81_RS23530 (JJB81_23525) | 62635..62997 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| JJB81_RS23535 (JJB81_23530) | 63012..63323 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| JJB81_RS23540 (JJB81_23535) | 63345..63911 | + | 567 | WP_000399769.1 | type IV conjugative transfer system protein TraE | - |
| JJB81_RS23545 (JJB81_23540) | 63898..64638 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| JJB81_RS23550 (JJB81_23545) | 64638..66059 | + | 1422 | WP_000146700.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| JJB81_RS23555 (JJB81_23550) | 66049..66645 | + | 597 | WP_000527896.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| JJB81_RS23560 (JJB81_23555) | 66623..66868 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| JJB81_RS23565 (JJB81_23560) | 66865..67380 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JJB81_RS23570 (JJB81_23565) | 67515..67736 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| JJB81_RS23575 (JJB81_23570) | 67729..68196 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| JJB81_RS23580 (JJB81_23575) | 68313..68576 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| JJB81_RS23585 (JJB81_23580) | 68592..71240 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| JJB81_RS23590 (JJB81_23585) | 71215..71601 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| JJB81_RS23595 (JJB81_23590) | 71598..72230 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| JJB81_RS23600 (JJB81_23595) | 72227..73219 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| JJB81_RS23605 (JJB81_23600) | 73238..73546 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| JJB81_RS23610 (JJB81_23605) | 73531..74169 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JJB81_RS23615 (JJB81_23610) | 74206..74625 | + | 420 | WP_001229397.1 | HNH endonuclease signature motif containing protein | - |
| JJB81_RS23620 (JJB81_23615) | 74622..76448 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JJB81_RS23625 (JJB81_23620) | 76459..76674 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| JJB81_RS23630 (JJB81_23625) | 76686..77435 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JJB81_RS23635 (JJB81_23630) | 77649..77942 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JJB81_RS23640 (JJB81_23635) | 77929..78477 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JJB81_RS23645 (JJB81_23640) | 78467..79849 | + | 1383 | WP_001161719.1 | conjugal transfer pilus assembly protein TraH | - |
| JJB81_RS23650 (JJB81_23645) | 79846..82668 | + | 2823 | WP_001007086.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| JJB81_RS23655 (JJB81_23650) | 82684..83178 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| JJB81_RS23660 (JJB81_23655) | 83214..83945 | + | 732 | WP_000782438.1 | conjugal transfer complement resistance protein TraT | - |
| JJB81_RS23665 (JJB81_23660) | 84322..86565 | + | 2244 | WP_000009320.1 | type IV conjugative transfer system coupling protein TraD | - |
| JJB81_RS23670 (JJB81_23665) | 86574..86972 | - | 399 | WP_000911322.1 | type II toxin-antitoxin system VapC family toxin | - |
| JJB81_RS23675 (JJB81_23670) | 86972..87199 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | - |
| JJB81_RS23680 (JJB81_23675) | 87281..92539 | + | 5259 | WP_000986921.1 | Multifunctional conjugation protein TraI | Relaxase |
| JJB81_RS23685 (JJB81_23680) | 92559..93299 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| JJB81_RS23690 (JJB81_23685) | 93354..93917 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|