MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 113686 bp
Accession: NZ_CP067226 Location: 1..113686 Organism: Paracoccus sp. MC1862 Replicon: plasmid unnamed1
Accession: NZ_CP067226 Location: 1..113686 Organism: Paracoccus sp. MC1862 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGR78_RS16345 () | 149..1384 | + | 1236 | WP_182805386.1 | hypothetical protein | - |
| JGR78_RS16350 () | 1577..1780 | - | 204 | WP_182793676.1 | hypothetical protein | - |
| JGR78_RS16355 () | 2144..2551 | + | 408 | WP_182793677.1 | hypothetical protein | - |
| JGR78_RS16360 () | 2541..3053 | + | 513 | WP_182793678.1 | thermonuclease family protein | - |
| JGR78_RS16365 () | 4025..4636 | + | 612 | WP_182805381.1 | Crp/Fnr family transcriptional regulator | - |
| JGR78_RS16370 () | 4774..5028 | + | 255 | WP_182793680.1 | addiction module antitoxin | - |
| JGR78_RS16375 () | 5031..5348 | + | 318 | WP_182793681.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JGR78_RS16380 () | 5540..7720 | + | 2181 | WP_182805379.1 | ATP-dependent RecD-like DNA helicase | - |
| JGR78_RS16385 () | 8088..9239 | - | 1152 | WP_182805377.1 | hypothetical protein | - |
| JGR78_RS16390 () | 9344..9573 | + | 230 | Protein_9 | hypothetical protein | - |
| JGR78_RS16395 () | 9547..9909 | - | 363 | WP_182805375.1 | IS5 family transposase ISAcma45 | Transposase |
| JGR78_RS16400 () | 9993..10553 | - | 561 | WP_182805373.1 | peptidoglycan-binding protein LysM | - |
| JGR78_RS16405 () | 10732..11955 | - | 1224 | WP_182805371.1 | PHB depolymerase family esterase | - |
| JGR78_RS16410 () | 11986..12405 | - | 420 | WP_182805369.1 | CopG family transcriptional regulator | - |
| JGR78_RS16415 () | 12789..13667 | + | 879 | WP_200559533.1 | hemerythrin domain-containing protein | - |
| JGR78_RS16420 () | 13708..14139 | + | 432 | WP_200559535.1 | YsnF/AvaK domain-containing protein | - |
| JGR78_RS16425 () | 14201..14875 | + | 675 | WP_182806263.1 | YsnF/AvaK domain-containing protein | - |
| JGR78_RS16430 () | 15227..16243 | + | 1017 | WP_200559537.1 | Leukotoxin | VF |
| JGR78_RS16435 () | 16418..17926 | - | 1509 | WP_200559538.1 | Leukotoxin | VF |
| JGR78_RS16440 () | 18280..18381 | - | 102 | Protein_19 | ATP-binding protein | - |
| JGR78_RS16445 () | 18548..18730 | + | 183 | Protein_20 | IS3 family transposase ISMlo4 | Transposase |
| JGR78_RS16450 () | 18751..20022 | - | 1272 | WP_182806271.1 | IS256 family transposase ISOan9 | Transposase |
| JGR78_RS16455 () | 20128..20241 | + | 114 | Protein_22 | IS3 family transposase | - |
| JGR78_RS16460 () | 20316..21668 | + | 1353 | WP_200559540.1 | ISNCY family transposase ISRel26 | Transposase |
| JGR78_RS16465 () | 21900..22898 | - | 999 | WP_182806233.1 | branched-chain amino acid ABC transporter permease | - |
| JGR78_RS16470 () | 22900..23787 | - | 888 | WP_182806230.1 | branched-chain amino acid ABC transporter permease | - |
| JGR78_RS16475 () | 23789..24490 | - | 702 | WP_182806228.1 | ABC transporter ATP-binding protein | - |
| JGR78_RS16480 () | 24487..25278 | - | 792 | WP_200559542.1 | ABC transporter ATP-binding protein | - |
| JGR78_RS16485 () | 25357..26523 | - | 1167 | WP_182806188.1 | Acryloyl-CoA reductase (NADH) | VF |
| JGR78_RS16490 () | 26666..27706 | + | 1041 | WP_182806191.1 | zinc-binding dehydrogenase | - |
| JGR78_RS16495 () | 27703..28479 | + | 777 | WP_182806193.1 | enoyl-CoA hydratase/isomerase family protein | - |
| JGR78_RS16500 () | 28537..28968 | - | 432 | WP_182806195.1 | acyl-CoA thioesterase | - |
| JGR78_RS16505 () | 28979..29905 | - | 927 | WP_182806197.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| JGR78_RS16510 () | 29905..30663 | - | 759 | WP_200559543.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| JGR78_RS16515 () | 30676..31869 | - | 1194 | WP_182805625.1 | Acyl-CoA dehydrogenase | VF |
| JGR78_RS16520 () | 31890..33092 | - | 1203 | WP_182805627.1 | 3-oxoadipyl-CoA thiolase | - |
| JGR78_RS16525 () | 33103..35148 | - | 2046 | WP_182805629.1 | FAD-dependent oxidoreductase | - |
| JGR78_RS16530 () | 35162..35923 | - | 762 | WP_182805631.1 | (S)-1-Phenylethanol dehydrogenase | VF |
| JGR78_RS16535 () | 35920..37572 | - | 1653 | WP_182793321.1 | Medium-chain fatty-acid--CoA ligase | VF |
| JGR78_RS16540 () | 37612..38772 | - | 1161 | WP_182793322.1 | acyl-CoA dehydrogenase family protein | - |
| JGR78_RS16545 () | 38834..39625 | - | 792 | WP_182793323.1 | enoyl-CoA hydratase/isomerase family protein | - |
| JGR78_RS16550 () | 39639..40406 | - | 768 | WP_182805633.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| JGR78_RS16555 () | 40594..41115 | + | 522 | WP_182793325.1 | MarR family transcriptional regulator | - |
| JGR78_RS16560 () | 41192..42751 | - | 1560 | WP_182805635.1 | AMP-binding protein | - |
| JGR78_RS16565 () | 42831..44036 | - | 1206 | WP_182805654.1 | ABC transporter substrate-binding protein | - |
| JGR78_RS16570 () | 44566..45345 | - | 780 | WP_182805637.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| JGR78_RS16575 () | 45329..46162 | - | 834 | WP_182805639.1 | enoyl-CoA hydratase/isomerase family protein | - |
| JGR78_RS16580 () | 46185..48113 | - | 1929 | WP_182805641.1 | AMP-binding protein | - |
| JGR78_RS16585 () | 48467..49075 | - | 609 | WP_182805656.1 | glutathione transferase GstA | - |
| JGR78_RS16590 () | 49383..49940 | - | 558 | WP_182805643.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| JGR78_RS16595 () | 50484..52553 | + | 2070 | WP_182805658.1 | PBP1A family penicillin-binding protein | - |
| JGR78_RS16600 () | 52695..53414 | - | 720 | WP_182805645.1 | hypothetical protein | - |
| JGR78_RS16605 () | 53657..54979 | - | 1323 | WP_182805648.1 | organoarsenical effux MFS transporter ArsJ | - |
| JGR78_RS16610 () | 54910..55932 | - | 1023 | WP_182805650.1 | ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase | - |
| JGR78_RS16615 () | 55937..56785 | - | 849 | WP_182805652.1 | helix-turn-helix domain-containing protein | - |
| JGR78_RS16620 () | 56963..58503 | + | 1541 | Protein_55 | IS21 family transposase ISMex27 | Transposase |
| JGR78_RS16625 () | 58493..59287 | + | 795 | WP_200559304.1 | IS21 family transposase ISRsp3 | Transposase |
| JGR78_RS16630 () | 59474..60754 | - | 1281 | WP_182806160.1 | glycerophosphodiester phosphodiesterase | - |
| JGR78_RS16635 () | 61161..63140 | - | 1980 | WP_182806162.1 | PhoX family phosphatase | - |
| JGR78_RS16640 () | 63478..64392 | + | 915 | Protein_59 | transposase | - |
| JGR78_RS16650 () | 66020..66427 | - | 408 | WP_182806289.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| JGR78_RS16655 () | 66424..66684 | - | 261 | WP_182806073.1 | antitoxin | Antitoxin Detail |
| JGR78_RS16660 () | 66750..66935 | - | 186 | WP_182806301.1 | WGR domain-containing protein | - |
| JGR78_RS16665 () | 67061..67633 | - | 573 | WP_200559529.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| JGR78_RS16670 () | 68045..69652 | + | 1608 | WP_182806134.1 | AIPR family protein | - |
| JGR78_RS16675 () | 70024..71295 | + | 1272 | WP_182806136.1 | low temperature requirement protein A | - |
| JGR78_RS16680 () | 71331..72110 | - | 780 | WP_200559530.1 | HNH endonuclease | - |
| JGR78_RS16685 () | 72333..72548 | + | 216 | WP_200559545.1 | hypothetical protein | - |
| JGR78_RS16690 () | 72817..73275 | + | 459 | WP_182806245.1 | IS66 family transposase ISRhsp5 | Transposase |
| JGR78_RS16695 () | 73275..73628 | + | 354 | WP_182806250.1 | IS66 family transposase ISRhsp5 | Transposase |
| JGR78_RS16700 () | 73696..75264 | + | 1569 | WP_182806247.1 | IS66 family transposase ISRhsp5 | Transposase |
| JGR78_RS16705 () | 75460..76206 | - | 747 | WP_182806105.1 | restriction endonuclease | - |
| JGR78_RS16710 () | 76208..77929 | - | 1722 | WP_182806103.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| JGR78_RS16715 () | 77992..78213 | - | 222 | WP_182806101.1 | hypothetical protein | - |
| JGR78_RS16720 () | 78291..78653 | - | 363 | WP_182806098.1 | Trans-acting regulatory protein HvrA | VF |
| JGR78_RS16725 () | 79328..80530 | + | 1203 | WP_200559531.1 | GAF domain-containing protein | - |
| JGR78_RS16730 () | 80779..80940 | - | 162 | WP_182806093.1 | hypothetical protein | - |
| JGR78_RS16735 () | 81109..81474 | + | 366 | WP_182793519.1 | hypothetical protein | - |
| JGR78_RS16740 () | 81621..82055 | + | 435 | WP_182806091.1 | peptidase S24 | - |
| JGR78_RS16745 () | 82060..83352 | + | 1293 | WP_182806089.1 | Y-family DNA polymerase | - |
| JGR78_RS16750 () | 83324..83548 | - | 225 | WP_182806087.1 | hypothetical protein | - |
| JGR78_RS16755 () | 84916..85371 | + | 456 | WP_182805440.1 | hypothetical protein | VF |
| JGR78_RS16760 () | 85450..87321 | + | 1872 | WP_182805435.1 | ParB N-terminal domain-containing protein | - |
| JGR78_RS16765 () | 87397..87603 | + | 207 | WP_182805433.1 | hypothetical protein | - |
| JGR78_RS16770 () | 87780..88220 | - | 441 | WP_182805431.1 | type II toxin-antitoxin system VapC family toxin | - |
| JGR78_RS16775 () | 88205..88459 | - | 255 | WP_182805428.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| JGR78_RS16780 () | 89319..90209 | + | 891 | WP_182805426.1 | DUF1738 domain-containing protein | - |
| JGR78_RS16785 () | 90800..91618 | - | 819 | WP_182805424.1 | hypothetical protein | - |
| JGR78_RS16790 () | 91618..92343 | - | 726 | WP_182805422.1 | Protein virC1 | VF |
| JGR78_RS16795 () | 92899..94068 | - | 1170 | WP_182805420.1 | IS5 family transposase ISRosp6 | Transposase |
| JGR78_RS16800 () | 94423..95064 | + | 642 | WP_182805417.1 | hypothetical protein | Relaxase |
| JGR78_RS16805 () | 95057..96883 | + | 1827 | WP_182805415.1 | T-DNA border endonuclease VirD2 | Relaxase |
| JGR78_RS16810 () | 96904..98988 | + | 2085 | WP_182805413.1 | type IV secretory system conjugative DNA transfer family protein | - |
| JGR78_RS16815 () | 98985..99983 | - | 999 | WP_182805411.1 | Type IV secretion system protein VirB11 | VF |
| JGR78_RS16820 () | 99983..101362 | - | 1380 | WP_182805409.1 | Type IV secretion system protein virB10 | VF |
| JGR78_RS16825 () | 101362..102090 | - | 729 | WP_182805407.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| JGR78_RS16830 () | 102087..102773 | - | 687 | WP_182805405.1 | Type IV secretion system protein PtlE | VF |
| JGR78_RS16835 () | 102807..103817 | - | 1011 | WP_182805403.1 | hypothetical protein | VF |
| JGR78_RS16840 () | 103817..104428 | - | 612 | WP_182805401.1 | hypothetical protein | - |
| JGR78_RS16845 () | 104431..105222 | - | 792 | WP_182805398.1 | conjugal transfer protein TraF | - |
| JGR78_RS16850 () | 105219..106289 | - | 1071 | WP_182805396.1 | lytic transglycosylase domain-containing protein | - |
| JGR78_RS16855 () | 106499..108850 | - | 2352 | WP_182805394.1 | type IV secretion system protein B4 | - |
| JGR78_RS16860 () | 108843..109118 | - | 276 | WP_182805392.1 | VirB3 family type IV secretion system protein | - |
| JGR78_RS16865 () | 109118..109423 | - | 306 | WP_182805390.1 | TrbC/VirB2 family protein | - |
| JGR78_RS16870 () | 109438..109974 | - | 537 | WP_182805438.1 | lytic transglycosylase domain-containing protein | - |
| JGR78_RS16875 () | 110135..110482 | - | 348 | WP_182793683.1 | hypothetical protein | - |
| JGR78_RS16880 () | 110881..111543 | - | 663 | WP_182793671.1 | hypothetical protein | - |
| JGR78_RS16885 () | 111549..111758 | - | 210 | WP_182793672.1 | hypothetical protein | - |
| JGR78_RS16890 () | 111896..112519 | + | 624 | WP_182793673.1 | autoinducer binding domain-containing protein | - |
| JGR78_RS16895 () | 112937..113539 | + | 603 | WP_182805388.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|