MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 135126 bp
Accession: NZ_CP067068 Location: 1..135126 Organism: Raoultella sp. XY-1 Replicon: plasmid unnamed2
Accession: NZ_CP067068 Location: 1..135126 Organism: Raoultella sp. XY-1 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGY86_RS27600 () | 1..849 | + | 849 | WP_004118155.1 | transporter substrate-binding domain-containing protein | - |
| JGY86_RS27605 () | 873..1544 | + | 672 | WP_004118931.1 | amino acid ABC transporter permease | - |
| JGY86_RS27610 () | 1541..2203 | + | 663 | WP_004118928.1 | amino acid ABC transporter permease | - |
| JGY86_RS27615 () | 2208..3026 | + | 819 | WP_004118925.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| JGY86_RS27620 () | 3023..3988 | + | 966 | WP_004118922.1 | DMT family transporter | - |
| JGY86_RS27625 () | 4065..5241 | + | 1177 | Protein_5 | IS3 family transposase ISEc27 | Transposase |
| JGY86_RS27630 () | 5324..5602 | - | 279 | WP_004118904.1 | transposase | - |
| JGY86_RS27635 () | 6004..6111 | + | 108 | Protein_7 | antirestriction protein ArdA | - |
| JGY86_RS27640 () | 6229..7221 | - | 993 | WP_004118901.1 | DsbA family protein | - |
| JGY86_RS27645 () | 7218..8666 | - | 1449 | WP_200382875.1 | AMP-binding protein | - |
| JGY86_RS27650 () | 8693..9543 | + | 851 | Protein_10 | IS3 family transposase ISEhe3 | Transposase |
| JGY86_RS27655 () | 9825..10442 | + | 618 | Protein_11 | IS110 family transposase ISEc21 | Transposase |
| JGY86_RS27660 () | 10509..11264 | - | 756 | WP_038423655.1 | IS21 family transposase ISEc10 | Transposase |
| JGY86_RS27665 () | 11261..12760 | - | 1500 | WP_181680454.1 | IS21 family transposase ISEc10 | Transposase |
| JGY86_RS27670 () | 12854..13798 | + | 945 | Protein_14 | IS110 family transposase IS1618 | Transposase |
| JGY86_RS27675 () | 14097..14300 | + | 204 | Protein_15 | DUF2726 domain-containing protein | - |
| JGY86_RS27680 () | 14307..14873 | + | 567 | WP_051800686.1 | Phospholipase D | VF |
| JGY86_RS27685 () | 15014..15283 | + | 270 | WP_040118434.1 | replication regulatory protein RepA | - |
| JGY86_RS27690 () | 15499..15570 | + | 72 | WP_071887233.1 | RepA leader peptide Tap | - |
| JGY86_RS27695 () | 15563..16435 | + | 873 | WP_072046527.1 | incFII family plasmid replication initiator RepA | - |
| JGY86_RS27700 () | 17923..20118 | - | 2196 | WP_098140144.1 | DEAD/DEAH box helicase | - |
| JGY86_RS27705 () | 20115..21431 | - | 1317 | WP_004152291.1 | ATP-binding protein | - |
| JGY86_RS27710 () | 21435..23744 | - | 2310 | WP_098140145.1 | TerB N-terminal domain-containing protein | - |
| JGY86_RS27715 () | 24375..25343 | - | 969 | WP_000654812.1 | IS5 family transposase IS903B | Transposase |
| JGY86_RS27720 () | 25729..26214 | - | 486 | Protein_24 | IS21 family transposase ISEc62 | Transposase |
| JGY86_RS27725 () | 26356..26523 | + | 168 | WP_004118231.1 | integrase | - |
| JGY86_RS27730 () | 26808..27935 | + | 1128 | WP_004118840.1 | transporter substrate-binding protein | - |
| JGY86_RS27735 () | 27932..28525 | + | 594 | WP_004118229.1 | ANTAR domain-containing protein | - |
| JGY86_RS27740 () | 28522..29370 | + | 849 | WP_004118228.1 | ABC transporter permease | - |
| JGY86_RS27745 () | 29370..30290 | + | 921 | WP_004118227.1 | ABC transporter permease | - |
| JGY86_RS27750 () | 30303..31907 | + | 1605 | WP_004152278.1 | ABC transporter substrate-binding protein | - |
| JGY86_RS27755 () | 31952..32899 | + | 948 | WP_098140146.1 | acetamidase/formamidase family protein | - |
| JGY86_RS27760 () | 32907..34640 | + | 1734 | WP_004118832.1 | Glutathione import ATP-binding protein GsiA | VF |
| JGY86_RS27765 () | 34816..35261 | + | 446 | Protein_33 | creatininase family protein | - |
| JGY86_RS27770 () | 35881..36418 | + | 538 | Protein_34 | DUF2913 family protein | - |
| JGY86_RS27775 () | 36600..37604 | - | 1005 | WP_021546935.1 | IS110 family transposase IS4321R | Transposase |
| JGY86_RS27780 () | 37878..38846 | + | 969 | WP_200382877.1 | IS5 family transposase IS903B | Transposase |
| JGY86_RS27785 () | 38903..39283 | + | 381 | Protein_37 | transposase family protein | - |
| JGY86_RS27790 () | 39327..39791 | - | 465 | Protein_38 | IS91 family transposase IS1294 | Transposase |
| JGY86_RS27795 () | 39843..40763 | - | 921 | WP_004181990.1 | putative cyclic di-GMP phosphodiesterase | VF |
| JGY86_RS27800 () | 40726..44106 | - | 3381 | WP_098140150.1 | Aerobic respiration control sensor protein ArcB | VF |
| JGY86_RS27805 () | 44411..45601 | + | 1191 | WP_004197507.1 | urea ABC transporter substrate-binding protein | - |
| JGY86_RS27810 () | 45658..46584 | + | 927 | WP_004181993.1 | urea ABC transporter permease subunit UrtB | - |
| JGY86_RS27815 () | 46594..47709 | + | 1116 | WP_004181994.1 | urea ABC transporter permease subunit UrtC | - |
| JGY86_RS27820 () | 47706..48455 | + | 750 | WP_098140151.1 | urea ABC transporter ATP-binding protein UrtD | - |
| JGY86_RS27825 () | 48466..49155 | + | 690 | WP_004181996.1 | urea ABC transporter ATP-binding subunit UrtE | - |
| JGY86_RS27830 () | 49191..50198 | + | 1008 | WP_004181997.1 | formamidase | - |
| JGY86_RS27835 () | 50406..51103 | - | 698 | Protein_47 | IS1 family transposase IS1X3 | Transposase |
| JGY86_RS27840 () | 51288..51404 | - | 117 | Protein_48 | transposase domain-containing protein | - |
| JGY86_RS27845 () | 51349..51612 | - | 264 | WP_004118209.1 | transposase | - |
| JGY86_RS27850 () | 51627..51890 | + | 264 | WP_004118208.1 | hypothetical protein | - |
| JGY86_RS27855 () | 52134..52415 | + | 282 | WP_004152118.1 | helix-turn-helix domain-containing protein | - |
| JGY86_RS27860 () | 52450..53019 | + | 570 | WP_004152117.1 | Spore protein SP21 | VF |
| JGY86_RS27865 () | 53125..55920 | + | 2796 | WP_098140153.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VF |
| JGY86_RS27870 () | 55920..56117 | + | 198 | WP_035896695.1 | hypothetical protein | - |
| JGY86_RS27875 () | 56355..57104 | + | 750 | WP_098140154.1 | phosphate-starvation-inducible PsiE family protein | - |
| JGY86_RS27880 () | 57091..58053 | + | 963 | WP_098140155.1 | M48 family metalloprotease | - |
| JGY86_RS27885 () | 58194..59395 | + | 1202 | Protein_57 | IS3 family transposase ISKpn38 | Transposase |
| JGY86_RS27890 () | 59554..60036 | - | 483 | WP_004098919.1 | GNAT family N-acetyltransferase | Toxin Detail |
| JGY86_RS27895 () | 60024..60290 | - | 267 | WP_004098921.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| JGY86_RS27900 () | 60466..60720 | - | 255 | WP_049078423.1 | hypothetical protein | - |
| JGY86_RS27905 () | 60796..61053 | - | 258 | WP_004098928.1 | hypothetical protein | - |
| JGY86_RS27910 () | 61102..61305 | - | 204 | WP_004098931.1 | hemolysin expression modulator Hha | - |
| JGY86_RS27915 () | 61339..61707 | - | 369 | WP_009653915.1 | hypothetical protein | - |
| JGY86_RS27920 () | 61751..62245 | - | 495 | WP_004118696.1 | hypothetical protein | - |
| JGY86_RS27925 () | 62276..62843 | - | 568 | Protein_65 | hypothetical protein | - |
| JGY86_RS27930 () | 62840..63103 | - | 264 | WP_004118691.1 | hypothetical protein | - |
| JGY86_RS27935 () | 63417..63677 | + | 261 | WP_017146633.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| JGY86_RS27940 () | 63664..63960 | + | 297 | WP_017146632.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JGY86_RS27945 () | 64140..64574 | - | 435 | WP_017146631.1 | hypothetical protein | - |
| JGY86_RS27950 () | 64789..66187 | - | 1399 | Protein_70 | copper resistance membrane spanning protein PcoS | - |
| JGY86_RS27955 () | 66184..66863 | - | 680 | Protein_71 | Transcriptional activator protein CopR | VF |
| JGY86_RS27960 () | 66918..67845 | - | 928 | Protein_72 | copper resistance inner membrane protein PcoD | - |
| JGY86_RS27965 () | 67850..68230 | - | 381 | WP_085397508.1 | copper resistance system metallochaperone PcoC | - |
| JGY86_RS27970 () | 68270..69160 | - | 891 | WP_001378118.1 | copper resistance outer membrane transporter PcoB | - |
| JGY86_RS27975 () | 69166..70983 | - | 1818 | WP_073554100.1 | multicopper oxidase PcoA | - |
| JGY86_RS27980 () | 71218..71667 | + | 450 | WP_064360952.1 | hypothetical protein | - |
| JGY86_RS27985 () | 71956..72693 | + | 738 | WP_000287501.1 | Murein DD-endopeptidase MepM | VF |
| JGY86_RS27990 () | 72727..72924 | - | 198 | WP_000843497.1 | DUF2933 domain-containing protein | - |
| JGY86_RS27995 () | 72965..75436 | - | 2472 | WP_129897305.1 | Ag(+)-translocating P-type ATPase SilP | - |
| JGY86_RS28000 () | 75534..75974 | - | 441 | WP_002436620.1 | hypothetical protein | - |
| JGY86_RS28005 () | 76061..79207 | - | 3147 | WP_200382851.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| JGY86_RS28010 () | 79219..80487 | - | 1269 | WP_200382853.1 | efflux RND transporter periplasmic adaptor subunit | - |
| JGY86_RS28015 () | 80601..80954 | - | 354 | WP_001246153.1 | cation efflux system protein CusF | - |
| JGY86_RS28020 () | 80983..82368 | - | 1386 | WP_000475503.1 | Cation efflux system protein CusC | VF |
| JGY86_RS28025 () | 82558..83238 | + | 681 | WP_000697968.1 | Transcriptional regulatory protein CusR | VF |
| JGY86_RS28030 () | 83231..84706 | + | 1476 | WP_004118652.1 | copper/silver sensor histidine kinase SilS | - |
| JGY86_RS28035 () | 84957..85388 | + | 432 | WP_000790483.1 | silver-binding protein SilE | - |
| JGY86_RS28050 () | 88257..89377 | + | 1121 | WP_085950818.1 | IS3 family transposase ISSen4 | Transposase |
| JGY86_RS28055 () | 89605..90558 | + | 954 | WP_001198018.1 | cation diffusion facilitator family transporter | - |
| JGY86_RS28060 () | 90670..91044 | + | 375 | WP_011977761.1 | hypothetical protein | - |
| JGY86_RS28065 () | 91827..92807 | + | 981 | WP_000019441.1 | IS5 family transposase ISKpn26 | Transposase |
| JGY86_RS28070 () | 93745..94264 | - | 520 | Protein_94 | IS5 family transposase ISPst7 | Transposase |
| JGY86_RS28075 () | 94607..95434 | + | 828 | WP_047727571.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| JGY86_RS28080 () | 95431..96294 | + | 864 | WP_047727570.1 | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | - |
| JGY86_RS28085 () | 96303..97130 | + | 828 | WP_010466252.1 | phosphonate ABC transporter, permease protein PhnE | - |
| JGY86_RS28090 () | 97139..98149 | + | 1011 | WP_003118429.1 | phosphonate dehydrogenase PtxD | - |
| JGY86_RS28095 () | 98143..99012 | + | 870 | WP_010466239.1 | HTH-type transcriptional activator CmpR | VF |
| JGY86_RS28100 () | 99120..99428 | + | 309 | Protein_100 | IS5 family transposase ISThi1 | Transposase |
| JGY86_RS28105 () | 99574..99807 | - | 234 | WP_047727569.1 | hypothetical protein | - |
| JGY86_RS28110 () | 99875..100084 | - | 210 | WP_004187413.1 | hypothetical protein | - |
| JGY86_RS28115 () | 100087..100305 | - | 219 | WP_011091034.1 | hypothetical protein | - |
| JGY86_RS28120 () | 100350..101033 | - | 684 | WP_047727568.1 | hypothetical protein | - |
| JGY86_RS28125 () | 101030..101302 | - | 273 | WP_047727567.1 | helix-turn-helix transcriptional regulator | - |
| JGY86_RS28130 () | 101320..102594 | - | 1275 | WP_086817650.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| JGY86_RS28135 () | 103075..103437 | + | 363 | WP_000533745.1 | hypothetical protein | - |
| JGY86_RS28140 () | 103455..104264 | + | 810 | WP_047727565.1 | hypothetical protein | - |
| JGY86_RS28145 () | 104829..106501 | + | 1673 | Protein_109 | DNA repair protein | - |
| JGY86_RS28150 () | 106732..106998 | + | 267 | WP_063923542.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| JGY86_RS28155 () | 107647..108387 | + | 741 | WP_001515717.1 | tyrosine-type recombinase/integrase | - |
| JGY86_RS28160 () | 109085..110095 | - | 1011 | WP_000200070.1 | RepB family plasmid replication initiator protein | - |
| JGY86_RS28165 () | 110846..112012 | + | 1167 | WP_000523812.1 | Sporulation initiation inhibitor protein Soj | VF |
| JGY86_RS28170 () | 112012..112983 | + | 972 | WP_004206785.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| JGY86_RS28175 () | 113886..114583 | - | 698 | Protein_115 | IS1 family transposase IS1X2 | Transposase |
| JGY86_RS28180 () | 114662..115177 | + | 516 | WP_200382855.1 | conjugal transfer protein TraS | - |
| JGY86_RS28185 () | 115362..116093 | + | 732 | WP_103449233.1 | complement resistance protein TraT | - |
| JGY86_RS28190 () | 116287..118617 | + | 2331 | WP_103449279.1 | type IV conjugative transfer system coupling protein TraD | - |
| JGY86_RS28195 () | 118617..123878 | + | 5262 | WP_200382865.1 | Multifunctional conjugation protein TraI | Relaxase |
| JGY86_RS28200 () | 123971..124696 | + | 726 | WP_032700803.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| JGY86_RS28205 () | 124838..125425 | + | 588 | WP_032716672.1 | fertility inhibition protein FinO | - |
| JGY86_RS28210 () | 125664..126359 | + | 696 | Protein_122 | IS1 family transposase | - |
| JGY86_RS28215 () | 126374..126514 | - | 141 | Protein_123 | galactoside O-acetyltransferase | - |
| JGY86_RS28220 () | 126580..127833 | - | 1254 | WP_004098904.1 | lactose permease | - |
| JGY86_RS28225 () | 127885..130959 | - | 3075 | WP_044349011.1 | beta-galactosidase | - |
| JGY86_RS28230 () | 131081..131506 | - | 426 | Protein_126 | substrate-binding domain-containing protein | - |
| JGY86_RS28235 () | 131620..132588 | - | 969 | WP_000654811.1 | IS5 family transposase IS903B | Transposase |
| JGY86_RS28240 () | 132719..133930 | - | 1212 | WP_004118158.1 | M24 family metallopeptidase | - |
| JGY86_RS28245 () | 134017..134970 | - | 954 | WP_004118935.1 | Glycine cleavage system transcriptional activator | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|