MGE detailed information
MGE type: Genomic_island MGE length: 52344 bp
Accession: NZ_CP066978 Location: 3702652..3754995 Organism: Xanthomonas campestris pv. incanae strain 18048 Replicon: chromosome
Accession: NZ_CP066978 Location: 3702652..3754995 Organism: Xanthomonas campestris pv. incanae strain 18048 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH290_RS16180 (JH290_16140) | 3698367..3699248 | + | 882 | WP_011038204.1 | outer membrane protein assembly factor BamD | - |
| JH290_RS16185 (JH290_16145) | 3699699..3700697 | + | 999 | WP_223646351.1 | hypothetical protein | - |
| JH290_RS16190 (JH290_16150) | 3700691..3702346 | - | 1656 | WP_057671669.1 | NAD+ synthase | - |
| JH290_RS16195 (JH290_16155) | 3702346..3702648 | - | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JH290_RS16200 (JH290_16160) | 3702652..3702936 | - | 285 | WP_040942253.1 | CopG family transcriptional regulator | - |
| JH290_RS16205 (JH290_16165) | 3703166..3704041 | - | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| JH290_RS16210 (JH290_16170) | 3704066..3705235 | - | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JH290_RS16215 (JH290_16175) | 3705469..3707079 | + | 1611 | WP_223646353.1 | Signal transduction histidine-protein kinase AtoS | VF |
| JH290_RS16220 (JH290_16180) | 3707288..3708682 | + | 1395 | WP_223646355.1 | Regulatory protein AtoC | VF |
| JH290_RS16225 (JH290_16185) | 3708874..3709236 | + | 363 | WP_217694196.1 | hypothetical protein | - |
| JH290_RS16230 (JH290_16190) | 3709236..3709973 | + | 738 | WP_070690009.1 | zeta toxin family protein | - |
| JH290_RS16235 (JH290_16195) | 3710156..3711892 | - | 1737 | WP_223646357.1 | putative type II secretion system protein HxcR | VF |
| JH290_RS16240 (JH290_16200) | 3711986..3712432 | - | 447 | WP_274704645.1 | pilin | - |
| JH290_RS16250 (JH290_16205) | 3712552..3712992 | - | 441 | WP_223646359.1 | Fimbrial protein | VF |
| JH290_RS16255 (JH290_16210) | 3713346..3714605 | + | 1260 | WP_223646360.1 | type II secretion system F family protein | - |
| JH290_RS16260 (JH290_16215) | 3714612..3715475 | + | 864 | WP_223646361.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| JH290_RS16265 (JH290_16220) | 3715489..3716112 | + | 624 | WP_223646362.1 | dephospho-CoA kinase | - |
| JH290_RS16270 (JH290_16225) | 3716643..3717044 | + | 402 | WP_223646363.1 | SymE family type I addiction module toxin | - |
| JH290_RS16275 (JH290_16230) | 3717120..3717410 | + | 291 | WP_014508712.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| JH290_RS16280 (JH290_16235) | 3717407..3717898 | + | 492 | WP_223646366.1 | GNAT family N-acetyltransferase | Toxin Detail |
| JH290_RS16285 (JH290_16240) | 3718041..3719375 | - | 1335 | WP_019237347.1 | HAMP domain-containing sensor histidine kinase | - |
| JH290_RS16290 (JH290_16245) | 3719368..3720045 | - | 678 | WP_003490678.1 | Transcriptional regulatory protein TcrA | VF |
| JH290_RS16295 (JH290_16250) | 3720695..3721570 | - | 876 | WP_070689999.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| JH290_RS16300 (JH290_16255) | 3722063..3724192 | + | 2130 | WP_223646368.1 | glycogen debranching protein GlgX | - |
| JH290_RS16305 (JH290_16260) | 3724724..3725116 | - | 393 | WP_011038224.1 | H-NS family nucleoid-associated regulatory protein | - |
| JH290_RS16310 (JH290_16265) | 3725207..3725602 | - | 396 | WP_042594933.1 | hypothetical protein | - |
| JH290_RS16315 (JH290_16270) | 3725787..3725933 | - | 147 | WP_116889157.1 | hypothetical protein | - |
| JH290_RS16320 | 3726051..3726362 | - | 312 | WP_223646370.1 | hypothetical protein | - |
| JH290_RS16325 (JH290_16280) | 3726525..3726896 | - | 372 | WP_116889159.1 | hypothetical protein | - |
| JH290_RS16330 (JH290_16285) | 3727594..3727935 | + | 342 | WP_070689991.1 | hypothetical protein | - |
| JH290_RS16335 (JH290_16290) | 3728000..3728281 | + | 282 | WP_076037058.1 | DUF6516 family protein | - |
| JH290_RS16340 (JH290_16295) | 3728289..3728657 | + | 369 | WP_223646372.1 | transcriptional regulator | - |
| JH290_RS16345 (JH290_16300) | 3728729..3730324 | - | 1596 | WP_223646374.1 | MobA/MobL family protein | - |
| JH290_RS16350 (JH290_16305) | 3730591..3730845 | + | 255 | WP_223646376.1 | hypothetical protein | - |
| JH290_RS16355 (JH290_16310) | 3730873..3732294 | - | 1422 | WP_223646379.1 | hypothetical protein | - |
| JH290_RS16360 (JH290_16315) | 3732287..3732976 | - | 690 | WP_223646381.1 | hypothetical protein | - |
| JH290_RS16365 (JH290_16320) | 3733073..3734410 | - | 1338 | WP_223646383.1 | hypothetical protein | - |
| JH290_RS16370 (JH290_16325) | 3734412..3736394 | - | 1983 | WP_223646385.1 | DUF87 domain-containing protein | - |
| JH290_RS16375 (JH290_16330) | 3736405..3737232 | - | 828 | WP_223646387.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| JH290_RS16380 (JH290_16335) | 3737376..3737855 | - | 480 | WP_029219507.1 | DNA repair protein RadC | - |
| JH290_RS16385 (JH290_16340) | 3738255..3738479 | - | 225 | WP_029219506.1 | hypothetical protein | - |
| JH290_RS16390 (JH290_16345) | 3738677..3739351 | - | 675 | WP_223646389.1 | Abi family protein | - |
| JH290_RS16395 (JH290_16350) | 3739376..3740478 | + | 1103 | WP_223646391.1 | IS3 family transposase IS1404 | Transposase |
| JH290_RS16405 (JH290_16360) | 3741642..3743042 | + | 1401 | WP_223646393.1 | hypothetical protein ; Integrase | Integrase |
| JH290_RS16410 (JH290_16365) | 3743124..3743507 | - | 384 | WP_119129756.1 | hypothetical protein | - |
| JH290_RS16415 (JH290_16370) | 3743557..3743781 | + | 225 | WP_075287338.1 | hypothetical protein | - |
| JH290_RS16420 (JH290_16375) | 3743814..3745343 | - | 1530 | WP_075287337.1 | DndE family protein | - |
| JH290_RS16425 | 3745345..3746118 | - | 774 | WP_223648261.1 | hypothetical protein | - |
| JH290_RS16430 (JH290_16380) | 3746022..3747422 | - | 1401 | WP_223646395.1 | AAA family ATPase | - |
| JH290_RS16435 (JH290_16385) | 3747412..3747627 | - | 216 | WP_017154970.1 | hypothetical protein | - |
| JH290_RS16440 (JH290_16390) | 3747648..3748805 | - | 1158 | WP_223646397.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| JH290_RS16445 (JH290_16395) | 3748936..3749265 | - | 330 | WP_075287335.1 | helix-turn-helix transcriptional regulator | - |
| JH290_RS16450 (JH290_16400) | 3749367..3750128 | + | 762 | WP_223646399.1 | hypothetical protein | - |
| JH290_RS16455 (JH290_16405) | 3750183..3750497 | + | 315 | WP_223646401.1 | hypothetical protein | - |
| JH290_RS16460 (JH290_16410) | 3750494..3750874 | + | 381 | WP_223646403.1 | hypothetical protein | - |
| JH290_RS16465 (JH290_16415) | 3751455..3752300 | + | 846 | WP_139051259.1 | hypothetical protein | - |
| JH290_RS16470 (JH290_16420) | 3752311..3753156 | + | 846 | WP_223646405.1 | hypothetical protein | - |
| JH290_RS16475 (JH290_16425) | 3753490..3755043 | - | 1554 | WP_223646407.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| JH290_RS16485 (JH290_16435) | 3755307..3757091 | - | 1785 | WP_223648217.1 | autotransporter domain-containing protein | - |
| JH290_RS16490 (JH290_16440) | 3757280..3757480 | + | 201 | WP_223646409.1 | sulfur carrier protein ThiS | - |
| JH290_RS16495 (JH290_16445) | 3757529..3758323 | + | 795 | WP_011038257.1 | thiazole synthase | - |
| JH290_RS16500 (JH290_16450) | 3758465..3759250 | + | 786 | WP_223646411.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|