MGE detailed information
MGE type: Genomic_island MGE length: 53884 bp
Accession: NZ_CP066966 Location: 1247619..1301502 Organism: Xanthomonas campestris pv. campestris strain 08305 Replicon: chromosome
Accession: NZ_CP066966 Location: 1247619..1301502 Organism: Xanthomonas campestris pv. campestris strain 08305 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH275_RS05245 (JH275_05225) | 1243236..1244021 | - | 786 | WP_011038258.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| JH275_RS05250 (JH275_05230) | 1244166..1244960 | - | 795 | WP_011038257.1 | thiazole synthase | - |
| JH275_RS05255 (JH275_05235) | 1245009..1245209 | - | 201 | WP_011038256.1 | sulfur carrier protein ThiS | - |
| JH275_RS05260 (JH275_05240) | 1245398..1247182 | + | 1785 | WP_011038255.1 | autotransporter domain-containing protein | - |
| JH275_RS05270 (JH275_05250) | 1247619..1249499 | + | 1881 | WP_019237331.1 | hypothetical protein ; Integrase | Integrase |
| JH275_RS05275 (JH275_05255) | 1249684..1250103 | + | 420 | WP_019237332.1 | hypothetical protein | - |
| JH275_RS05280 (JH275_05260) | 1250136..1251137 | + | 1002 | WP_011038253.1 | hypothetical protein | - |
| JH275_RS05285 (JH275_05265) | 1251208..1251858 | - | 651 | WP_011038252.1 | LysR substrate-binding domain-containing protein | - |
| JH275_RS05290 (JH275_05270) | 1251961..1252254 | + | 294 | WP_011038251.1 | hypothetical protein | VF |
| JH275_RS05295 (JH275_05275) | 1252282..1253166 | - | 885 | WP_011038250.1 | LysR family transcriptional regulator | - |
| JH275_RS05300 (JH275_05280) | 1253956..1255323 | + | 1368 | WP_011035783.1 | IS5 family transposase IS1478 | Transposase |
| JH275_RS05305 (JH275_05285) | 1255640..1256620 | + | 981 | WP_011036443.1 | IS5 family transposase IS1646 | Transposase |
| JH275_RS05310 (JH275_05290) | 1256711..1260619 | - | 3909 | WP_274495701.1 | helix-turn-helix domain-containing protein | - |
| JH275_RS05315 (JH275_05295) | 1260939..1261271 | - | 333 | Protein_1025 | IS3 family transposase ISXca1 | Transposase |
| JH275_RS05320 (JH275_05300) | 1261302..1262404 | - | 1103 | Protein_1026 | IS3 family transposase IS1404 | Transposase |
| JH275_RS05325 (JH275_05305) | 1262473..1262808 | - | 336 | Protein_1027 | IS3 family transposase ISXca1 | Transposase |
| JH275_RS05330 (JH275_05310) | 1262881..1263989 | + | 1109 | WP_087942070.1 | IS3 family transposase | - |
| JH275_RS05335 (JH275_05315) | 1264006..1264841 | - | 836 | Protein_1029 | IS3 family transposase ISXca1 | Transposase |
| JH275_RS05340 (JH275_05320) | 1264905..1265162 | - | 258 | Protein_1030 | hypothetical protein | - |
| JH275_RS05345 (JH275_05325) | 1265159..1265818 | - | 660 | WP_011038238.1 | hypothetical protein | - |
| JH275_RS05350 (JH275_05330) | 1265815..1266345 | - | 531 | WP_011038239.1 | hypothetical protein | - |
| JH275_RS05355 (JH275_05335) | 1266743..1267282 | - | 540 | WP_225443876.1 | DUF4189 domain-containing protein | - |
| JH275_RS05360 (JH275_05340) | 1267360..1268499 | - | 1140 | WP_011038241.1 | type IV secretion system protein | - |
| JH275_RS05365 (JH275_05345) | 1268531..1269178 | - | 648 | WP_016848927.1 | hypothetical protein | - |
| JH275_RS05370 (JH275_05350) | 1270200..1271738 | - | 1539 | WP_011038243.1 | MASE1 domain-containing protein | - |
| JH275_RS05375 (JH275_05355) | 1272706..1272867 | - | 162 | Protein_1037 | IS5/IS1182 family transposase | - |
| JH275_RS05380 (JH275_05360) | 1272928..1276191 | + | 3264 | WP_011038245.1 | ATP-binding protein | - |
| JH275_RS05385 (JH275_05365) | 1276516..1276991 | + | 476 | Protein_1039 | IS3 family transposase ISXca1 | Transposase |
| JH275_RS05395 (JH275_05375) | 1278202..1278489 | + | 288 | Protein_1041 | IS3 family transposase ISXca1 | Transposase |
| JH275_RS05400 (JH275_05380) | 1278520..1279512 | - | 993 | Protein_1042 | MobH family relaxase | - |
| JH275_RS05405 (JH275_05385) | 1279963..1280919 | + | 957 | WP_228442279.1 | hypothetical protein | VF |
| JH275_RS05410 (JH275_05390) | 1281023..1281313 | + | 291 | WP_019237341.1 | hypothetical protein | - |
| JH275_RS05415 (JH275_05395) | 1281469..1282395 | - | 927 | WP_011038232.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| JH275_RS05420 (JH275_05400) | 1282388..1283146 | - | 759 | WP_011038231.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| JH275_RS05425 (JH275_05405) | 1283371..1283730 | + | 360 | WP_029628872.1 | DUF3742 family protein | - |
| JH275_RS05430 (JH275_05410) | 1283742..1285265 | - | 1524 | WP_029628873.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| JH275_RS05435 (JH275_05415) | 1285281..1285628 | - | 348 | WP_011269554.1 | hypothetical protein | - |
| JH275_RS05440 (JH275_05420) | 1285625..1287025 | - | 1401 | WP_029628874.1 | integrating conjugative element protein | - |
| JH275_RS05445 (JH275_05425) | 1287036..1287974 | - | 939 | WP_011038228.1 | TIGR03756 family integrating conjugative element protein | - |
| JH275_RS05455 | 1289444..1289755 | + | 312 | WP_228428745.1 | hypothetical protein | - |
| JH275_RS05460 (JH275_05440) | 1289873..1290028 | + | 156 | WP_011038226.1 | hypothetical protein | - |
| JH275_RS05465 (JH275_05445) | 1290205..1290600 | + | 396 | WP_011038225.1 | hypothetical protein | - |
| JH275_RS05470 (JH275_05450) | 1290691..1291083 | + | 393 | WP_011038224.1 | H-NS family nucleoid-associated regulatory protein | - |
| JH275_RS05475 (JH275_05455) | 1291622..1293751 | - | 2130 | WP_011038223.1 | glycogen debranching protein GlgX | - |
| JH275_RS05480 (JH275_05460) | 1294244..1295119 | + | 876 | WP_011038222.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| JH275_RS05485 (JH275_05465) | 1295769..1296446 | + | 678 | WP_003490678.1 | Regulator of RpoS | VF |
| JH275_RS05490 (JH275_05470) | 1296439..1297773 | + | 1335 | WP_019237347.1 | HAMP domain-containing sensor histidine kinase | - |
| JH275_RS05495 (JH275_05475) | 1297916..1298407 | - | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | Toxin Detail |
| JH275_RS05500 (JH275_05480) | 1298404..1298694 | - | 291 | WP_011038219.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| JH275_RS05505 (JH275_05485) | 1298769..1299170 | - | 402 | WP_019237348.1 | SymE family type I addiction module toxin | - |
| JH275_RS05510 (JH275_05490) | 1299702..1300325 | - | 624 | WP_011038217.1 | dephospho-CoA kinase | - |
| JH275_RS05515 (JH275_05495) | 1300339..1301202 | - | 864 | WP_011038216.1 | hypothetical protein | VF |
| JH275_RS05520 (JH275_05500) | 1301209..1302465 | - | 1257 | WP_011038215.1 | type II secretion system F family protein | - |
| JH275_RS05525 (JH275_05505) | 1302792..1303232 | + | 441 | WP_011038214.1 | pilin | - |
| JH275_RS05530 (JH275_05510) | 1303312..1303746 | + | 435 | WP_011038213.1 | pilin | - |
| JH275_RS05535 (JH275_05515) | 1303811..1305544 | + | 1734 | WP_011038212.1 | type IV-A pilus assembly ATPase PilB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|