MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 90867 bp
Accession: NZ_CP066943 Location: 1147706..1238572 Organism: Xanthomonas campestris pv. campestris strain 12049 Replicon: chromosome
Accession: NZ_CP066943 Location: 1147706..1238572 Organism: Xanthomonas campestris pv. campestris strain 12049 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH293_RS04770 (JH293_04780) | 1143360..1144223 | - | 864 | WP_274375972.1 | hypothetical protein | - |
| JH293_RS04780 (JH293_04790) | 1144867..1145757 | + | 891 | WP_274375973.1 | MobA/MobL family protein | - |
| JH293_RS04785 (JH293_04795) | 1145983..1146375 | - | 393 | WP_007970012.1 | hypothetical protein | - |
| JH293_RS04790 (JH293_04800) | 1146424..1146741 | - | 318 | WP_193395476.1 | hypothetical protein | - |
| JH293_RS04795 (JH293_04805) | 1146977..1147318 | + | 342 | WP_055026769.1 | helix-turn-helix transcriptional regulator | - |
| JH293_RS04800 (JH293_04810) | 1147481..1149190 | + | 1710 | WP_274375974.1 | type IV secretory system conjugative DNA transfer family protein | - |
| JH293_RS04805 (JH293_04815) | 1149231..1149686 | + | 456 | WP_274375975.1 | hypothetical protein | - |
| JH293_RS04810 (JH293_04820) | 1149683..1153354 | + | 3672 | WP_274376045.1 | peptidoglycan-binding protein | - |
| JH293_RS04815 (JH293_04825) | 1153657..1154955 | + | 1299 | WP_274375976.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| JH293_RS04820 (JH293_04830) | 1154952..1157168 | + | 2217 | WP_274375977.1 | peptidase domain-containing ABC transporter | - |
| JH293_RS04825 (JH293_04835) | 1157273..1158007 | + | 735 | WP_104607440.1 | hypothetical protein | - |
| JH293_RS04830 (JH293_04840) | 1158016..1158606 | + | 591 | WP_274375978.1 | hypothetical protein | - |
| JH293_RS04835 (JH293_04845) | 1158734..1159252 | + | 519 | WP_274375979.1 | hypothetical protein | - |
| JH293_RS04840 (JH293_04850) | 1159401..1160678 | - | 1278 | WP_274375980.1 | ABC transporter permease | - |
| JH293_RS04845 (JH293_04855) | 1160741..1161172 | - | 432 | WP_126215781.1 | toxin-activating lysine-acyltransferase | - |
| JH293_RS04850 (JH293_04860) | 1161162..1162976 | - | 1815 | WP_274375981.1 | protein adenylyltransferase SelO family protein | - |
| JH293_RS04855 (JH293_04865) | 1163466..1165109 | + | 1644 | WP_274375982.1 | MobA/MobL family protein | - |
| JH293_RS04860 (JH293_04870) | 1165566..1166258 | + | 693 | WP_254894400.1 | hypothetical protein | - |
| JH293_RS04865 (JH293_04875) | 1166363..1167097 | - | 735 | WP_143030930.1 | hypothetical protein | - |
| JH293_RS04870 (JH293_04880) | 1167144..1167593 | - | 450 | WP_274375983.1 | DUF6527 family protein | - |
| JH293_RS04875 (JH293_04885) | 1167590..1168774 | - | 1185 | WP_071118757.1 | ThiF family adenylyltransferase | - |
| JH293_RS04880 (JH293_04890) | 1168749..1169444 | - | 696 | WP_071118756.1 | multiubiquitin domain-containing protein | - |
| JH293_RS04885 (JH293_04895) | 1169592..1169918 | + | 327 | WP_057660995.1 | helix-turn-helix transcriptional regulator | - |
| JH293_RS04890 (JH293_04900) | 1169988..1170836 | + | 849 | WP_208411929.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JH293_RS04895 (JH293_04905) | 1171216..1172982 | + | 1767 | WP_274375984.1 | hypothetical protein ; Integrase | Integrase |
| JH293_RS04900 (JH293_04910) | 1172992..1174094 | - | 1103 | Protein_943 | IS3 family transposase IS1404 | Transposase |
| JH293_RS04905 (JH293_04915) | 1174488..1174907 | + | 420 | WP_019237332.1 | hypothetical protein | - |
| JH293_RS04910 (JH293_04920) | 1174940..1175941 | + | 1002 | WP_011038253.1 | hypothetical protein | - |
| JH293_RS04915 (JH293_04925) | 1176012..1176662 | - | 651 | WP_011038252.1 | LysR substrate-binding domain-containing protein | - |
| JH293_RS04920 (JH293_04930) | 1176765..1177058 | + | 294 | WP_011038251.1 | Amino-acid acetyltransferase | VF |
| JH293_RS04925 (JH293_04935) | 1177086..1177394 | - | 309 | WP_274376046.1 | LysR substrate-binding domain-containing protein | - |
| JH293_RS04930 (JH293_04940) | 1177477..1178585 | + | 1109 | WP_087942065.1 | IS3 family transposase | - |
| JH293_RS04935 (JH293_04945) | 1178617..1179174 | - | 558 | Protein_950 | LysR family transcriptional regulator | - |
| JH293_RS04940 (JH293_04950) | 1179927..1184027 | - | 4101 | WP_081020747.1 | HigA family addiction module antitoxin | - |
| JH293_RS04945 (JH293_04955) | 1184508..1187771 | - | 3264 | WP_011038245.1 | ATP-binding protein | - |
| JH293_RS04950 | 1187862..1187993 | + | 132 | Protein_953 | IS5/IS1182 family transposase | - |
| JH293_RS04955 (JH293_04960) | 1188962..1190500 | + | 1539 | WP_011038243.1 | MASE1 domain-containing protein | - |
| JH293_RS04960 (JH293_04965) | 1191522..1192169 | + | 648 | WP_016848927.1 | hypothetical protein | - |
| JH293_RS04965 (JH293_04970) | 1192201..1193340 | + | 1140 | WP_017117946.1 | type IV secretion system protein | - |
| JH293_RS04970 (JH293_04975) | 1193409..1193957 | + | 549 | WP_081306975.1 | DUF4189 domain-containing protein | - |
| JH293_RS04975 (JH293_04980) | 1194355..1194885 | + | 531 | WP_011038239.1 | hypothetical protein | - |
| JH293_RS04980 (JH293_04985) | 1194882..1195541 | + | 660 | WP_057671625.1 | hypothetical protein | - |
| JH293_RS04985 (JH293_04990) | 1195538..1196920 | + | 1383 | WP_221261828.1 | hypothetical protein | - |
| JH293_RS04990 (JH293_04995) | 1197024..1197373 | + | 350 | Protein_961 | Ribose import permease protein RbsC | VF |
| JH293_RS04995 (JH293_05000) | 1197556..1198923 | + | 1368 | WP_011035783.1 | IS5 family transposase IS1478 | Transposase |
| JH293_RS05000 (JH293_05005) | 1199472..1200616 | + | 1145 | WP_274349786.1 | IS3 family transposase ISXac3 | Transposase |
| JH293_RS05005 (JH293_05010) | 1201165..1201644 | + | 480 | WP_075286085.1 | DNA repair protein RadC | - |
| JH293_RS05010 (JH293_05015) | 1201715..1201906 | + | 192 | WP_221261829.1 | hypothetical protein | - |
| JH293_RS05015 (JH293_05020) | 1202279..1202695 | + | 417 | WP_147309009.1 | hypothetical protein | - |
| JH293_RS05020 (JH293_05025) | 1202688..1204109 | + | 1422 | WP_274375985.1 | hypothetical protein | - |
| JH293_RS05025 (JH293_05030) | 1204137..1204391 | - | 255 | WP_057671639.1 | hypothetical protein | - |
| JH293_RS05030 (JH293_05035) | 1204658..1206253 | + | 1596 | WP_192012501.1 | MobA/MobL family protein | - |
| JH293_RS05035 (JH293_05040) | 1206326..1206694 | - | 369 | WP_225443877.1 | transcriptional regulator | - |
| JH293_RS05040 (JH293_05045) | 1206702..1206983 | - | 282 | WP_011348355.1 | DUF6516 family protein | - |
| JH293_RS05045 (JH293_05050) | 1207049..1207390 | - | 342 | WP_081020748.1 | hypothetical protein | - |
| JH293_RS05050 (JH293_05055) | 1208116..1208466 | + | 351 | WP_225443878.1 | hypothetical protein | - |
| JH293_RS05055 (JH293_05060) | 1208766..1208996 | - | 231 | WP_157382680.1 | hypothetical protein | - |
| JH293_RS05060 (JH293_05065) | 1209060..1209206 | + | 147 | WP_040940792.1 | hypothetical protein | - |
| JH293_RS05065 (JH293_05070) | 1209391..1209786 | + | 396 | WP_042594933.1 | hypothetical protein | - |
| JH293_RS05070 (JH293_05075) | 1209877..1210269 | + | 393 | WP_012437593.1 | H-NS family nucleoid-associated regulatory protein | - |
| JH293_RS05075 (JH293_05080) | 1210384..1210734 | - | 351 | WP_228415051.1 | hypothetical protein | - |
| JH293_RS05080 (JH293_05085) | 1210804..1212933 | - | 2130 | WP_057671651.1 | glycogen debranching protein GlgX | - |
| JH293_RS05085 (JH293_05090) | 1213427..1214302 | + | 876 | WP_016945000.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| JH293_RS05090 (JH293_05095) | 1214952..1215629 | + | 678 | WP_003490678.1 | Regulator of RpoS | VF |
| JH293_RS05095 (JH293_05100) | 1215622..1216956 | + | 1335 | WP_057671653.1 | HAMP domain-containing sensor histidine kinase | - |
| JH293_RS05100 (JH293_05105) | 1217099..1217590 | - | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | Toxin Detail |
| JH293_RS05105 (JH293_05110) | 1217587..1217877 | - | 291 | WP_011038219.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| JH293_RS05110 (JH293_05115) | 1217952..1218353 | - | 402 | WP_040940795.1 | SymE family type I addiction module toxin | - |
| JH293_RS05115 (JH293_05120) | 1218885..1219508 | - | 624 | WP_011038217.1 | dephospho-CoA kinase | - |
| JH293_RS05120 (JH293_05125) | 1219522..1220385 | - | 864 | WP_011038216.1 | hypothetical protein | VF |
| JH293_RS05125 (JH293_05130) | 1220392..1221648 | - | 1257 | WP_011038215.1 | type II secretion system F family protein | - |
| JH293_RS05130 (JH293_05135) | 1221975..1222415 | + | 441 | WP_011038214.1 | hypothetical protein | VF |
| JH293_RS05135 (JH293_05140) | 1222495..1222929 | + | 435 | WP_011038213.1 | pilin | - |
| JH293_RS05140 (JH293_05145) | 1222994..1224727 | + | 1734 | WP_011038212.1 | hypothetical protein | VF |
| JH293_RS05145 (JH293_05150) | 1224953..1226055 | - | 1103 | Protein_992 | IS3 family transposase IS1404 | Transposase |
| JH293_RS05155 (JH293_05160) | 1226353..1227747 | - | 1395 | WP_043877723.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| JH293_RS05160 (JH293_05165) | 1227956..1229566 | - | 1611 | WP_011038210.1 | Adaptive-response sensory-kinase SasA | VF |
| JH293_RS05165 (JH293_05170) | 1229800..1230969 | + | 1170 | WP_011038209.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JH293_RS05170 (JH293_05175) | 1230994..1231869 | + | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| JH293_RS05175 (JH293_05180) | 1232099..1232383 | + | 285 | WP_040942253.1 | CopG family transcriptional regulator | - |
| JH293_RS05180 (JH293_05185) | 1232387..1232689 | + | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JH293_RS05185 (JH293_05190) | 1232689..1234344 | + | 1656 | WP_057671669.1 | NAD+ synthase | - |
| JH293_RS05190 (JH293_05195) | 1234338..1235324 | - | 987 | WP_057671671.1 | hypothetical protein | - |
| JH293_RS05195 (JH293_05200) | 1235776..1236657 | - | 882 | WP_011038204.1 | outer membrane protein assembly factor BamD | - |
| JH293_RS05200 (JH293_05205) | 1236780..1237775 | + | 996 | WP_057671673.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| JH293_RS05205 (JH293_05210) | 1237777..1238577 | + | 801 | WP_050911331.1 | peptidoglycan editing factor PgeF | - |
| JH293_RS05210 (JH293_05215) | 1238598..1239095 | + | 498 | WP_050911332.1 | DUF4166 domain-containing protein | - |
| JH293_RS05215 (JH293_05220) | 1239082..1239501 | + | 420 | WP_012437616.1 | thiol-disulfide oxidoreductase DCC family protein | - |
| JH293_RS05220 (JH293_05225) | 1240137..1241955 | - | 1819 | Protein_1006 | methyl-accepting chemotaxis protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|