MGE detailed information
MGE type: Prophage MGE length: 67089 bp
Accession: NZ_CP066839 Location: 4238816..4305904 Organism: Escherichia coli strain Ec-RL2-1X Replicon: chromosome
Accession: NZ_CP066839 Location: 4238816..4305904 Organism: Escherichia coli strain Ec-RL2-1X Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH656_RS20835 (4236420) | 4236420..4237145 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| JH656_RS20840 (4237182) | 4237182..4237721 | - | 540 | WP_000824114.1 | fimbrial protein | - |
| JH656_RS20845 (4237786) | 4237786..4238334 | - | 549 | WP_000695564.1 | type 1 fimbrial major subunit FimA | - |
| JH656_RS20850 (4238816) | 4238816..4239412 | - | 597 | WP_000044711.1 | hypothetical protein | VF |
| JH656_RS20855 (4239890) | 4239890..4240492 | - | 603 | WP_000790583.1 | hypothetical protein | VF |
| JH656_RS20860 (4241948) | 4241948..4242664 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| JH656_RS20865 (4242684) | 4242684..4243790 | + | 1107 | WP_023568191.1 | N-acetylneuraminate epimerase | - |
| JH656_RS20870 (4243855) | 4243855..4244835 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| JH656_RS20875 (4244945) | 4244945..4245150 | + | 206 | Protein_4087 | HNH endonuclease | - |
| JH656_RS20880 (4245418) | 4245418..4246658 | - | 1241 | Protein_4088 | helicase YjhR | - |
| JH656_RS20885 (4246774) | 4246774..4246905 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| JH656_RS20890 (4247396) | 4247396..4247653 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| JH656_RS20895 (4247665) | 4247665..4248210 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| JH656_RS20900 (4248266) | 4248266..4249012 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| JH656_RS20905 (4249181) | 4249181..4249399 | + | 219 | Protein_4093 | hypothetical protein | - |
| JH656_RS20910 (4249437) | 4249437..4249553 | + | 117 | Protein_4094 | VOC family protein | - |
| JH656_RS20915 (4249798) | 4249798..4250919 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| JH656_RS20920 (4250916) | 4250916..4251194 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| JH656_RS20925 (4251206) | 4251206..4252519 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| JH656_RS20930 (4252532) | 4252532..4253338 | + | 807 | WP_000118626.1 | BtpA family protein SgcQ | - |
| JH656_RS20935 (4253469) | 4253469..4253900 | + | 432 | WP_000606406.1 | SgcA family PTS sugar transporter subunit IIA | - |
| JH656_RS20940 (4253912) | 4253912..4254544 | + | 633 | WP_000600622.1 | ribulose-phosphate 3 epimerase family protein | - |
| JH656_RS20945 (4254561) | 4254561..4255343 | + | 783 | WP_000082780.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| JH656_RS20950 (4255646) | 4255646..4256434 | + | 789 | WP_000251798.1 | IclR family transcriptional regulator | - |
| JH656_RS20955 (4256439) | 4256439..4257344 | + | 906 | WP_000714563.1 | dihydrodipicolinate synthase family protein | - |
| JH656_RS20960 (4257355) | 4257355..4259337 | + | 1983 | WP_242561942.1 | xylonate dehydratase YjhG | - |
| JH656_RS20965 (4259366) | 4259366..4260063 | + | 698 | WP_103215986.1 | IS1 family transposase IS1R | Transposase |
| JH656_RS20970 (4260206) | 4260206..4261555 | + | 1350 | WP_001128363.1 | GntP family permease | - |
| JH656_RS20975 (4261902) | 4261902..4262888 | + | 987 | WP_000373366.1 | sugar-binding transcriptional regulator | - |
| JH656_RS20980 (4262929) | 4262929..4263933 | - | 1005 | WP_000471147.1 | GRP family sugar transporter | - |
| JH656_RS20985 (4264037) | 4264037..4264678 | - | 642 | WP_000439687.1 | L-fuculose-phosphate aldolase | - |
| JH656_RS20990 (4264709) | 4264709..4265824 | - | 1116 | WP_001022014.1 | S-methyl-5-thioribose-1-phosphate isomerase | - |
| JH656_RS20995 (4265834) | 4265834..4267093 | - | 1260 | WP_000132327.1 | S-methyl-5-thioribose kinase | - |
| JH656_RS21000 (4267833) | 4267833..4267931 | - | 99 | Protein_4112 | TA system toxin CbtA family protein | - |
| JH656_RS21005 (4268021) | 4268021..4268389 | - | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| JH656_RS21010 (4268552) | 4268552..4268773 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| JH656_RS21015 (4268836) | 4268836..4269312 | - | 477 | WP_001186775.1 | RadC family protein | - |
| JH656_RS21020 (4269328) | 4269328..4269801 | - | 474 | WP_001350782.1 | antirestriction protein | - |
| JH656_RS21025 (4270143) | 4270143..4270961 | - | 819 | WP_001234656.1 | DUF932 domain-containing protein | - |
| JH656_RS21030 (4271147) | 4271147..4271668 | - | 522 | Protein_4118 | hypothetical protein | - |
| JH656_RS21035 (4271950) | 4271950..4272081 | + | 132 | Protein_4119 | IS3 family transposase | - |
| JH656_RS21040 (4272419) | 4272419..4272712 | - | 294 | WP_000239862.1 | biofilm development regulator YmgB/AriR family protein | - |
| JH656_RS21045 (4273015) | 4273015..4273119 | - | 105 | Protein_4121 | IS3 family transposase | - |
| JH656_RS21050 (4273146) | 4273146..4273295 | - | 150 | Protein_4122 | IS3 family transposase | - |
| JH656_RS21055 (4273364) | 4273364..4273426 | + | 63 | WP_113705808.1 | hypothetical protein | - |
| JH656_RS21060 (4273437) | 4273437..4274134 | - | 698 | Protein_4124 | IS1 family transposase | - |
| JH656_RS21065 (4274221) | 4274221..4274289 | - | 69 | WP_211180522.1 | protein YkiE | - |
| JH656_RS21070 (4274426) | 4274426..4274947 | + | 522 | WP_001283626.1 | hypothetical protein | VF |
| JH656_RS21075 (4274944) | 4274944..4275897 | + | 954 | WP_167814347.1 | ferric citrate uptake sigma factor regulator FecR | - |
| JH656_RS21080 (4275984) | 4275984..4278308 | + | 2325 | WP_242561943.1 | TonB-dependent Fe(3+) dicitrate receptor FecA | - |
| JH656_RS21085 (4278353) | 4278353..4279255 | + | 903 | WP_000879164.1 | Fe(3+) dicitrate ABC transporter substrate-binding protein FecB | - |
| JH656_RS21090 (4279252) | 4279252..4280250 | + | 999 | WP_000125187.1 | hypothetical protein | VF |
| JH656_RS21095 (4280247) | 4280247..4281203 | + | 957 | WP_000684856.1 | hypothetical protein | VF |
| JH656_RS21100 (4281204) | 4281204..4281971 | + | 768 | WP_106475308.1 | hypothetical protein | VF |
| JH656_RS21105 (4282528) | 4282528..4282785 | - | 258 | WP_000177057.1 | hypothetical protein | - |
| JH656_RS21110 (4282868) | 4282868..4283652 | - | 785 | Protein_4134 | IS3 family transposase ISEc52 | Transposase |
| JH656_RS21115 (4283719) | 4283719..4284875 | + | 1157 | WP_085947616.1 | IS3 family transposase ISSd1 | Transposase |
| JH656_RS21120 (4285029) | 4285029..4287026 | + | 1998 | WP_001293436.1 | choline BCCT transporter BetT | - |
| JH656_RS21125 (4287089) | 4287089..4287427 | + | 339 | Protein_4137 | DUF2254 family protein | - |
| JH656_RS21130 (4288351) | 4288351..4288352 | - | 2 | WP_085948656.1 | IS3 family transposase IS911 | Transposase |
| JH656_RS21135 (4288692) | 4288692..4288895 | - | 204 | WP_000355616.1 | MFS transporter | - |
| JH656_RS21140 (4288918) | 4288918..4289175 | + | 258 | WP_000254999.1 | surface-adhesin E family protein | - |
| JH656_RS21145 (4289228) | 4289228..4289353 | - | 126 | WP_000594405.1 | protein YthA | - |
| JH656_RS21150 (4289396) | 4289396..4290514 | - | 1119 | WP_000611568.1 | 2,7-anhydro-N-acetylneuraminate hydratase | - |
| JH656_RS21155 (4290526) | 4290526..4291743 | - | 1218 | WP_000179691.1 | MFS transporter | - |
| JH656_RS21160 (4292352) | 4292352..4293698 | + | 1347 | WP_000483767.1 | IS4 family transposase IS4 | Transposase |
| JH656_RS21165 (4293726) | 4293726..4293869 | - | 144 | WP_000050905.1 | hypothetical protein | - |
| JH656_RS21170 (4294212) | 4294212..4294441 | - | 230 | Protein_4146 | transposase domain-containing protein | - |
| JH656_RS21175 (4295028) | 4295028..4296208 | + | 1181 | Protein_4147 | phosphoethanolamine transferase | - |
| JH656_RS21180 (4296525) | 4296525..4297733 | - | 1209 | WP_223362169.1 | hypothetical protein ; Integrase | Integrase |
| JH656_RS21190 (4298256) | 4298256..4299275 | + | 1020 | WP_001318460.1 | NADPH-dependent aldehyde reductase Ahr | - |
| JH656_RS21195 (4299279) | 4299279..4299842 | - | 564 | WP_000896738.1 | gluconokinase | - |
| JH656_RS21200 (4300059) | 4300059..4301090 | + | 1032 | WP_023568197.1 | L-idonate 5-dehydrogenase | - |
| JH656_RS21205 (4301114) | 4301114..4301878 | + | 765 | WP_000998695.1 | hypothetical protein | VF |
| JH656_RS21210 (4301940) | 4301940..4303259 | + | 1320 | WP_001128335.1 | gnt-II system L-idonate transporter | - |
| JH656_RS21215 (4303326) | 4303326..4304324 | + | 999 | WP_001309159.1 | DNA-binding transcriptional regulator IdnR | - |
| JH656_RS21220 (4304402) | 4304402..4305904 | + | 1503 | WP_016245206.1 | DUF853 domain-containing protein | - |
| JH656_RS21225 (4306023) | 4306023..4307105 | - | 1083 | WP_001295681.1 | LPS export ABC transporter permease LptG | - |
| JH656_RS21230 (4307105) | 4307105..4308205 | - | 1101 | WP_000584114.1 | LPS export ABC transporter permease LptF | - |
| JH656_RS21235 (4308268) | 4308268..4308318 | - | 51 | WP_211180521.1 | protein YtgA | - |
| JH656_RS21240 (4308472) | 4308472..4309983 | + | 1512 | WP_000397144.1 | leucyl aminopeptidase | - |
| JH656_RS21245 (4310337) | 4310337..4310780 | + | 444 | WP_000786399.1 | DNA polymerase III subunit chi | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|