MGE detailed information
MGE type: Prophage MGE length: 73083 bp
Accession: NZ_CP066809 Location: 3059007..3132089 Organism: Shigella flexneri 3a strain 888048 Replicon: chromosome
Accession: NZ_CP066809 Location: 3059007..3132089 Organism: Shigella flexneri 3a strain 888048 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGY96_RS15585 (3055317) | 3055317..3055994 | - | 678 | WP_025759439.1 | dethiobiotin synthase | - |
| JGY96_RS15590 (3055987) | 3055987..3056742 | - | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| JGY96_RS15595 (3056729) | 3056729..3057883 | - | 1155 | WP_152030410.1 | 8-amino-7-oxononanoate synthase | - |
| JGY96_RS15600 (3057880) | 3057880..3058920 | - | 1041 | WP_000951214.1 | biotin synthase BioB | - |
| JGY96_RS15605 (3059007) | 3059007..3060296 | + | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| JGY96_RS15610 (3060274) | 3060274..3060744 | + | 471 | WP_000680095.1 | kinase inhibitor | - |
| JGY96_RS15615 (3061059) | 3061059..3061142 | + | 84 | Protein_3054 | hypothetical protein | - |
| JGY96_RS15620 (3061298) | 3061298..3062299 | + | 1002 | WP_000549610.1 | acyltransferase | - |
| JGY96_RS15625 (3062333) | 3062333..3063889 | - | 1557 | WP_236743519.1 | glycoside hydrolase family 55 protein | - |
| JGY96_RS15630 (3063960) | 3063960..3065171 | + | 1212 | Protein_3057 | IS3 family transposase | - |
| JGY96_RS15635 (3065213) | 3065213..3065515 | - | 303 | Protein_3058 | phage head-binding domain-containing protein | - |
| JGY96_RS15640 (3065647) | 3065647..3067488 | - | 1842 | WP_005067134.1 | hypothetical protein | - |
| JGY96_RS15645 (3067488) | 3067488..3068894 | - | 1407 | WP_047563448.1 | phage DNA ejection protein | - |
| JGY96_RS15650 (3068904) | 3068904..3069482 | - | 579 | Protein_3061 | DNA transfer protein | - |
| JGY96_RS15655 (3069434) | 3069434..3070407 | - | 974 | Protein_3062 | IS3 family transposase IS629 | Transposase |
| JGY96_RS15660 (3070610) | 3070610..3070690 | + | 81 | Protein_3063 | hypothetical protein | - |
| JGY96_RS15665 (3070700) | 3070700..3070786 | - | 87 | Protein_3064 | transposase | - |
| JGY96_RS15670 (3070878) | 3070878..3072641 | + | 1764 | WP_000805588.1 | hypothetical protein | VF |
| JGY96_RS15675 (3072821) | 3072821..3073442 | - | 622 | Protein_3066 | DUF4376 domain-containing protein | - |
| JGY96_RS15680 (3073393) | 3073393..3074807 | - | 1415 | Protein_3067 | prophage tail fiber N-terminal domain-containing protein | - |
| JGY96_RS15685 (3074871) | 3074871..3075470 | - | 600 | WP_152030413.1 | hypothetical protein | VF |
| JGY96_RS15690 (3075538) | 3075538..3079017 | - | 3480 | Protein_3069 | host specificity protein J | - |
| JGY96_RS15695 (3079078) | 3079078..3079619 | - | 542 | Protein_3070 | tail assembly protein | - |
| JGY96_RS15700 (3079616) | 3079616..3080359 | - | 744 | WP_000194737.1 | C40 family peptidase | - |
| JGY96_RS15705 (3080364) | 3080364..3081061 | - | 698 | Protein_3072 | phage minor tail protein L | - |
| JGY96_RS15710 (3081061) | 3081061..3081390 | - | 330 | WP_000447263.1 | phage tail protein | - |
| JGY96_RS15715 (3081390) | 3081390..3082097 | - | 708 | Protein_3074 | phage tail tape measure protein | - |
| JGY96_RS15720 (3083035) | 3083035..3083036 | - | 2 | WP_254100583.1 | IS3 family transposase ISSfl10 | Transposase |
| JGY96_RS15725 (3083360) | 3083360..3083977 | + | 618 | WP_152639728.1 | DUF4376 domain-containing protein | - |
| JGY96_RS15730 (3083983) | 3083983..3084087 | + | 105 | Protein_3077 | tail fiber assembly protein | - |
| JGY96_RS15735 (3084157) | 3084157..3085136 | - | 980 | Protein_3078 | hypothetical protein | VF |
| JGY96_RS15740 (3085195) | 3085195..3085891 | + | 697 | WP_153933088.1 | IS1 family transposase IS1X2 | Transposase |
| JGY96_RS15745 (3086273) | 3086273..3087268 | + | 996 | WP_119182165.1 | 6-phosphogluconolactonase | - |
| JGY96_RS15750 (3087309) | 3087309..3088262 | - | 954 | Protein_3081 | LysR family transcriptional regulator | - |
| JGY96_RS15755 (3088878) | 3088878..3088879 | - | 2 | WP_153933088.1 | IS1 family transposase | - |
| JGY96_RS15760 (3089222) | 3089222..3090274 | + | 1053 | WP_025759641.1 | 4-oxalomesaconate tautomerase | - |
| JGY96_RS15765 (3090350) | 3090350..3091661 | + | 1312 | Protein_3084 | anion permease | - |
| JGY96_RS15770 (3091734) | 3091734..3092183 | + | 450 | Protein_3085 | IS1 family transposase IS1X2 | Transposase |
| JGY96_RS15775 (3092200) | 3092200..3092367 | + | 168 | Protein_3086 | anion permease | - |
| JGY96_RS15780 (3092550) | 3092550..3094730 | + | 2181 | WP_000593939.1 | hydratase | - |
| JGY96_RS15785 (3094871) | 3094871..3096154 | - | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| JGY96_RS15790 (3096289) | 3096289..3097359 | - | 1071 | WP_025758499.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| JGY96_RS15795 (3097337) | 3097337..3097480 | - | 144 | WP_225620332.1 | excisionase | - |
| JGY96_RS15800 (3097588) | 3097588..3098706 | + | 1119 | Protein_3091 | IS3 family transposase ISLad1 | Transposase |
| JGY96_RS15805 (3098681) | 3098681..3098905 | - | 225 | WP_000034209.1 | ead/Ea22-like family protein | - |
| JGY96_RS15810 (3098902) | 3098902..3099027 | - | 126 | WP_000586905.1 | DUF2737 family protein | - |
| JGY96_RS15815 (3099064) | 3099064..3100290 | - | 1227 | Protein_3094 | IS3 family transposase IS2 | Transposase |
| JGY96_RS15820 (3100381) | 3100381..3101049 | - | 669 | Protein_3095 | PBSX family phage terminase large subunit | - |
| JGY96_RS15825 (3101000) | 3101000..3101764 | - | 765 | WP_152030432.1 | hypothetical protein | - |
| JGY96_RS15830 (3101959) | 3101959..3102471 | + | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| JGY96_RS15835 (3102560) | 3102560..3102661 | - | 102 | Protein_3098 | lysis protein | - |
| JGY96_RS15840 (3102810) | 3102810..3103483 | + | 674 | Protein_3099 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS15845 (3103480) | 3103480..3103824 | + | 345 | Protein_3100 | IS66 family transposase IS679 | Transposase |
| JGY96_RS15850 (3103844) | 3103844..3105231 | + | 1388 | Protein_3101 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS15855 (3105272) | 3105272..3106432 | - | 1161 | Protein_3102 | IS3 family transposase | - |
| JGY96_RS15860 (3106539) | 3106539..3106753 | + | 215 | Protein_3103 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS15865 (3106784) | 3106784..3108031 | - | 1248 | Protein_3104 | replicative DNA helicase | - |
| JGY96_RS15870 (3108028) | 3108028..3108906 | - | 879 | WP_000988187.1 | ATP-binding protein | - |
| JGY96_RS15875 (3108917) | 3108917..3109824 | - | 908 | Protein_3106 | DNA-binding protein | - |
| JGY96_RS15880 (3109811) | 3109811..3110044 | - | 234 | WP_000618004.1 | hypothetical protein | - |
| JGY96_RS15885 (3110041) | 3110041..3111009 | - | 969 | WP_000961310.1 | Rha family phage regulatory protein | - |
| JGY96_RS15890 (3111022) | 3111022..3111252 | + | 231 | WP_236743520.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JGY96_RS15895 (3111242) | 3111242..3111550 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| JGY96_RS15900 (3111592) | 3111592..3111768 | - | 177 | WP_001254220.1 | NinE family protein | - |
| JGY96_RS15905 (3111765) | 3111765..3112175 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| JGY96_RS15910 (3112172) | 3112172..3112450 | - | 279 | WP_025757756.1 | hypothetical protein | - |
| JGY96_RS15915 (3112525) | 3112525..3114873 | - | 2349 | Protein_3114 | toprim domain-containing protein | - |
| JGY96_RS15920 (3114913) | 3114913..3116074 | - | 1162 | Protein_3115 | IS3 family transposase | - |
| JGY96_RS15925 (3116178) | 3116178..3116591 | - | 414 | Protein_3116 | IS3 family transposase ISSfl10 | Transposase |
| JGY96_RS15930 (3116654) | 3116654..3117991 | + | 1338 | Protein_3117 | exodeoxyribonuclease VIII | - |
| JGY96_RS15935 (3117969) | 3117969..3118265 | + | 297 | WP_001277359.1 | host-nuclease inhibitor Gam family protein | - |
| JGY96_RS15940 (3118271) | 3118271..3119179 | + | 909 | WP_001173291.1 | AAA family ATPase | - |
| JGY96_RS15945 (3119557) | 3119557..3119558 | - | 2 | WP_153933088.1 | IS1 family transposase | - |
| JGY96_RS15950 (3120000) | 3120000..3120443 | + | 444 | WP_075328310.1 | hypothetical protein ; Integrase | Integrase |
| JGY96_RS15955 (3120679) | 3120679..3121498 | + | 820 | Protein_3122 | bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase | - |
| JGY96_RS15960 (3121499) | 3121499..3122557 | - | 1059 | WP_000891695.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| JGY96_RS15965 (3122560) | 3122560..3123249 | - | 690 | WP_000604036.1 | molybdate ABC transporter permease subunit | - |
| JGY96_RS15970 (3123249) | 3123249..3124022 | - | 774 | WP_025757642.1 | molybdate ABC transporter substrate-binding protein | - |
| JGY96_RS15975 (3124189) | 3124189..3124338 | - | 150 | WP_000891515.1 | multidrug efflux pump accessory protein AcrZ | - |
| JGY96_RS15980 (3124447) | 3124447..3125143 | + | 697 | WP_153933088.1 | IS1 family transposase IS1X2 | Transposase |
| JGY96_RS15985 (3125242) | 3125242..3126030 | + | 789 | WP_119182116.1 | molybdenum-dependent transcriptional regulator | - |
| JGY96_RS15990 (3126098) | 3126098..3127570 | + | 1473 | WP_000096896.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| JGY96_RS15995 (3127831) | 3127831..3128847 | + | 1017 | WP_001265430.1 | ADP-L-glycero-D-manno-heptose-6-epimerase | VF |
| JGY96_RS16000 (3128857) | 3128857..3129903 | + | 1047 | WP_000191508.1 | galactose-1-phosphate uridylyltransferase | - |
| JGY96_RS16005 (3129907) | 3129907..3131055 | + | 1149 | WP_000053437.1 | galactokinase | - |
| JGY96_RS16010 (3131049) | 3131049..3132089 | + | 1041 | WP_000931412.1 | galactose-1-epimerase | - |
| JGY96_RS16015 (3132292) | 3132292..3133044 | + | 753 | WP_001295305.1 | 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | - |
| JGY96_RS16020 (3133211) | 3133211..3134263 | - | 1053 | WP_119182117.1 | 3-deoxy-7-phosphoheptulonate synthase AroG | - |
| JGY96_RS16025 (3134579) | 3134579..3134959 | + | 381 | WP_000784351.1 | YbgS-like family protein | - |
| JGY96_RS16030 (3135073) | 3135073..3136014 | + | 942 | WP_000951292.1 | CDF family zinc transporter ZitB | - |
| JGY96_RS16035 (3136011) | 3136011..3136730 | - | 720 | WP_000345410.1 | nicotinamide riboside transporter PnuC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|