MGE detailed information
MGE type: Genomic_island MGE length: 64988 bp
Accession: NZ_CP066809 Location: 2717713..2782700 Organism: Shigella flexneri 3a strain 888048 Replicon: chromosome
Accession: NZ_CP066809 Location: 2717713..2782700 Organism: Shigella flexneri 3a strain 888048 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGY96_RS13830 (2714065) | 2714065..2715222 | + | 1158 | WP_001070350.1 | glucans biosynthesis protein MdoC | - |
| JGY96_RS13835 (2715230) | 2715230..2716711 | - | 1482 | Protein_2705 | cardiolipin synthase ClsC | - |
| JGY96_RS13840 (2716653) | 2716653..2717186 | - | 534 | WP_000857405.1 | O-acetyl-ADP-ribose deacetylase | - |
| JGY96_RS13845 (2717281) | 2717281..2717592 | - | 312 | Protein_2707 | type 1 fimbrial protein | - |
| JGY96_RS13850 (2717713) | 2717713..2718045 | - | 333 | WP_025759324.1 | hypothetical protein | VF |
| JGY96_RS13855 (2718104) | 2718104..2718469 | - | 366 | WP_025759326.1 | hypothetical protein | VF |
| JGY96_RS13865 (2719718) | 2719718..2719825 | - | 108 | Protein_2711 | hypothetical protein | VF |
| JGY96_RS13870 (2719866) | 2719866..2720321 | - | 456 | WP_000791650.1 | hypothetical protein | VF |
| JGY96_RS13875 (2721075) | 2721075..2721725 | + | 651 | WP_000481500.1 | HTH-type transcriptional regulator MalT | VF |
| JGY96_RS13880 (2721730) | 2721730..2722119 | + | 390 | WP_000833288.1 | hypothetical protein | VF |
| JGY96_RS13885 (2722144) | 2722144..2722347 | + | 204 | Protein_2715 | hypothetical protein | VF |
| JGY96_RS13890 (2722403) | 2722403..2723099 | + | 697 | WP_153933088.1 | IS1 family transposase IS1X2 | Transposase |
| JGY96_RS13895 (2723115) | 2723115..2723336 | + | 222 | Protein_2717 | curli assembly protein CsgF | - |
| JGY96_RS13900 (2723363) | 2723363..2724138 | + | 776 | Protein_2718 | hypothetical protein | VF |
| JGY96_RS13905 (2724202) | 2724202..2724693 | - | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| JGY96_RS13910 (2724795) | 2724795..2725349 | - | 555 | WP_001001917.1 | molecular chaperone YcdY | - |
| JGY96_RS13915 (2725373) | 2725373..2726110 | - | 738 | WP_000283664.1 | zinc-binding phosphatase | - |
| JGY96_RS13920 (2726165) | 2726165..2727103 | - | 939 | Protein_2722 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| JGY96_RS13930 (2727574) | 2727574..2728416 | - | 843 | WP_053884962.1 | DUF4942 domain-containing protein | - |
| JGY96_RS13935 (2728501) | 2728501..2728698 | - | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| JGY96_RS13940 (2728710) | 2728710..2729201 | - | 492 | WP_000976857.1 | DUF5983 family protein | - |
| JGY96_RS13945 (2729198) | 2729198..2729572 | - | 375 | WP_000854914.1 | TA system toxin CbtA family protein | Toxin Detail |
| JGY96_RS13950 (2729619) | 2729619..2729993 | - | 375 | WP_001280953.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| JGY96_RS13955 (2730156) | 2730156..2730377 | - | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| JGY96_RS13960 (2730440) | 2730440..2730916 | - | 477 | WP_001186738.1 | RadC family protein | - |
| JGY96_RS13965 (2730932) | 2730932..2731417 | - | 486 | WP_000214398.1 | antirestriction protein | - |
| JGY96_RS13970 (2731508) | 2731508..2731978 | - | 471 | Protein_2731 | DUF945 domain-containing protein | - |
| JGY96_RS13975 (2732021) | 2732021..2733233 | - | 1213 | Protein_2732 | IS3 family transposase | - |
| JGY96_RS13980 (2733287) | 2733287..2733728 | + | 442 | Protein_2733 | IS200-IS605 family transposase IS200G | Transposase |
| JGY96_RS13985 (2733846) | 2733846..2734784 | - | 939 | WP_052961806.1 | HTH-type transcriptional regulator ArgP | VF |
| JGY96_RS13990 (2735135) | 2735135..2735854 | + | 720 | WP_000677245.1 | amino acid racemase | - |
| JGY96_RS13995 (2735920) | 2735920..2737218 | + | 1299 | WP_000262203.1 | anaerobic C4-dicarboxylate transporter | - |
| JGY96_RS14000 (2737462) | 2737462..2738601 | - | 1140 | WP_071995536.1 | IS3 family transposase ISSd1 | Transposase |
| JGY96_RS14005 (2738782) | 2738782..2739726 | - | 945 | WP_001411475.1 | Lipid A biosynthesis myristoyltransferase | VF |
| JGY96_RS14010 (2739791) | 2739791..2740741 | - | 951 | WP_001300030.1 | virulence factor VirK | - |
| JGY96_RS14015 (2740746) | 2740746..2741234 | - | 489 | Protein_2740 | putative hexosyltransferase CapU | - |
| JGY96_RS14020 (2741694) | 2741694..2741695 | - | 2 | WP_001390281.1 | IS1 family transposase IS1R | Transposase |
| JGY96_RS14025 (2742036) | 2742036..2742874 | - | 839 | Protein_2742 | hypothetical protein | ARG |
| JGY96_RS14030 (2742987) | 2742987..2743817 | - | 831 | WP_001334766.1 | hypothetical protein | ARG |
| JGY96_RS14035 (2744027) | 2744027..2745040 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| JGY96_RS14040 (2745243) | 2745243..2745593 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| JGY96_RS14045 (2745719) | 2745719..2746279 | + | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| JGY96_RS14050 (2746282) | 2746282..2749248 | + | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| JGY96_RS14055 (2749315) | 2749315..2749692 | + | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| JGY96_RS14060 (2749893) | 2749893..2750552 | - | 660 | WP_000412211.1 | hypothetical protein | ARG |
| JGY96_RS14065 (2750831) | 2750831..2751528 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| JGY96_RS14070 (2751525) | 2751525..2751788 | + | 264 | WP_049802299.1 | antibiotic biosynthesis monooxygenase | - |
| JGY96_RS14075 (2751781) | 2751781..2752167 | + | 387 | WP_000460651.1 | hypothetical protein | - |
| JGY96_RS14080 (2752175) | 2752175..2752861 | + | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| JGY96_RS14085 (2752839) | 2752839..2753462 | - | 624 | WP_000088605.1 | hypothetical protein | VF |
| JGY96_RS14090 (2753544) | 2753544..2754749 | + | 1206 | WP_001089068.1 | Multidrug resistance protein MdtG | ARG |
| JGY96_RS14095 (2754862) | 2754862..2755455 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| JGY96_RS14100 (2755543) | 2755543..2755959 | + | 417 | WP_000275180.1 | HTH-type transcriptional activator RhaR | VF |
| JGY96_RS14105 (2755969) | 2755969..2757132 | - | 1164 | Protein_2758 | IS4 family transposase IS10R | Transposase |
| JGY96_RS14115 (2757901) | 2757901..2758506 | - | 606 | Protein_2760 | putative hexosyltransferase CapU | - |
| JGY96_RS14120 (2758509) | 2758509..2759351 | - | 843 | WP_160371899.1 | polysaccharide deacetylase family protein | - |
| JGY96_RS14125 (2759537) | 2759537..2760733 | + | 1197 | Protein_2762 | IS3 family transposase | - |
| JGY96_RS14130 (2760816) | 2760816..2761073 | + | 258 | WP_000177057.1 | hypothetical protein | - |
| JGY96_RS14135 (2761631) | 2761631..2762398 | - | 768 | WP_000175457.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| JGY96_RS14140 (2762399) | 2762399..2763355 | - | 957 | WP_000684856.1 | Vitamin B12 import system permease protein BtuC | VF |
| JGY96_RS14145 (2763352) | 2763352..2764350 | - | 999 | WP_000125175.1 | Vitamin B12 import system permease protein BtuC | VF |
| JGY96_RS14150 (2764347) | 2764347..2765249 | - | 903 | WP_000879153.1 | Fe(3+) dicitrate ABC transporter substrate-binding protein FecB | - |
| JGY96_RS14155 (2765294) | 2765294..2767618 | - | 2325 | WP_000188248.1 | TonB-dependent Fe(3+) dicitrate receptor FecA | - |
| JGY96_RS14160 (2767705) | 2767705..2768658 | - | 954 | WP_001068910.1 | ferric citrate uptake sigma factor regulator FecR | - |
| JGY96_RS14165 (2768655) | 2768655..2769176 | - | 522 | WP_001283626.1 | hypothetical protein | VF |
| JGY96_RS14170 (2769313) | 2769313..2769381 | + | 69 | Protein_2771 | protein YkiE | - |
| JGY96_RS14175 (2769650) | 2769650..2769754 | + | 105 | Protein_2772 | IS3 family transposase | - |
| JGY96_RS14180 (2770094) | 2770094..2770351 | + | 258 | WP_000555341.1 | biofilm development regulator YmgB/AriR family protein | - |
| JGY96_RS14185 (2770476) | 2770476..2770606 | - | 131 | Protein_2774 | IS5/IS1182 family transposase | - |
| JGY96_RS14190 (2770681) | 2770681..2771419 | + | 739 | Protein_2775 | IS3 family transposase IS629 | Transposase |
| JGY96_RS14195 (2772092) | 2772092..2773600 | + | 1509 | WP_001189109.1 | group II intron reverse transcriptase/maturase | - |
| JGY96_RS14200 (2773684) | 2773684..2774163 | + | 480 | Protein_2777 | IS3 family transposase IS629 | Transposase |
| JGY96_RS14205 (2774203) | 2774203..2774544 | - | 342 | WP_000287886.1 | inovirus-type Gp2 protein | - |
| JGY96_RS14210 (2774572) | 2774572..2775134 | - | 563 | Protein_2779 | inovirus Gp2 family protein | - |
| JGY96_RS14215 (2775198) | 2775198..2775544 | - | 347 | Protein_2780 | DEAD/DEAH box helicase | - |
| JGY96_RS14220 (2775651) | 2775651..2776214 | - | 564 | WP_000282110.1 | inovirus-type Gp2 protein | - |
| JGY96_RS14225 (2777589) | 2777589..2779424 | - | 1836 | WP_001258873.1 | hypothetical protein | - |
| JGY96_RS14230 (2779525) | 2779525..2779812 | + | 288 | WP_000070931.1 | AlpA family transcriptional regulator | - |
| JGY96_RS14235 (2779784) | 2779784..2781313 | + | 1530 | WP_005067490.1 | DUF3987 domain-containing protein | - |
| JGY96_RS14240 (2781483) | 2781483..2782700 | - | 1218 | WP_000279879.1 | hypothetical protein ; Integrase | Integrase |
| JGY96_RS14245 (2783067) | 2783067..2784053 | - | 987 | WP_000611845.1 | protein YcdU | - |
| JGY96_RS14250 (2784251) | 2784251..2784664 | + | 414 | WP_254100562.1 | hypothetical protein | - |
| JGY96_RS14255 (2784615) | 2784615..2785801 | + | 1187 | Protein_2788 | IS91 family transposase | - |
| JGY96_RS14260 (2786095) | 2786095..2786733 | - | 639 | WP_000191701.1 | HTH-type transcriptional regulator RutR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|