MGE detailed information
MGE type: Prophage MGE length: 117646 bp
Accession: NZ_CP066809 Location: 1711270..1828915 Organism: Shigella flexneri 3a strain 888048 Replicon: chromosome
Accession: NZ_CP066809 Location: 1711270..1828915 Organism: Shigella flexneri 3a strain 888048 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGY96_RS08305 () | 1707204..1708424 | + | 1221 | WP_000862618.1 | colanic acid biosynthesis glycosyltransferase WcaL | - |
| JGY96_RS08310 () | 1708435..1709829 | + | 1395 | WP_001116127.1 | colanic acid biosynthesis protein WcaM | - |
| JGY96_RS08315 () | 1710004..1710897 | + | 894 | WP_000183060.1 | UTP--glucose-1-phosphate uridylyltransferase GalF | - |
| JGY96_RS08320 () | 1711270..1712355 | + | 1086 | WP_000699403.1 | hypothetical protein | VF |
| JGY96_RS08325 () | 1712355..1713254 | + | 900 | WP_001023623.1 | dTDP-4-dehydrorhamnose reductase | - |
| JGY96_RS08330 () | 1713313..1714191 | + | 879 | WP_000857516.1 | hypothetical protein | VF |
| JGY96_RS08335 () | 1714196..1714741 | + | 546 | WP_001100804.1 | hypothetical protein | VF |
| JGY96_RS08340 () | 1714757..1716013 | + | 1257 | WP_000022479.1 | O13/O129/O135 family O-antigen flippase | - |
| JGY96_RS08345 () | 1716043..1716933 | + | 891 | WP_001087597.1 | rhamnosyltransferase | - |
| JGY96_RS08350 () | 1716926..1717831 | + | 906 | WP_000556238.1 | hypothetical protein | VF |
| JGY96_RS08355 () | 1717851..1718999 | + | 1149 | WP_001059768.1 | O13/O129/O135 family O-antigen polymerase | - |
| JGY96_RS08360 () | 1719003..1719377 | + | 375 | WP_011069435.1 | GtrA family protein | - |
| JGY96_RS08365 () | 1719440..1720378 | + | 939 | Protein_1637 | glycosyltransferase | - |
| JGY96_RS08370 () | 1720394..1721149 | + | 756 | WP_000571608.1 | hypothetical protein | - |
| JGY96_RS08375 () | 1721295..1722158 | + | 864 | WP_225620302.1 | hypothetical protein | - |
| JGY96_RS08380 () | 1722267..1723673 | + | 1407 | WP_000043429.1 | hypothetical protein | VF |
| JGY96_RS08385 () | 1723923..1725089 | + | 1167 | WP_025758270.1 | hypothetical protein | VF |
| JGY96_RS08390 () | 1725235..1726212 | + | 978 | WP_005049214.1 | LPS O-antigen chain length determinant protein WzzB | - |
| JGY96_RS08395 () | 1726398..1727009 | - | 612 | WP_000954900.1 | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE | - |
| JGY96_RS08400 () | 1727003..1727779 | - | 777 | WP_000880171.1 | imidazole glycerol phosphate synthase subunit HisF | - |
| JGY96_RS08405 () | 1727761..1728498 | - | 738 | WP_000586439.1 | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | - |
| JGY96_RS08410 () | 1728498..1729088 | - | 591 | WP_001103547.1 | imidazole glycerol phosphate synthase subunit HisH | - |
| JGY96_RS08415 () | 1729088..1730155 | - | 1068 | WP_000080120.1 | hypothetical protein | VF |
| JGY96_RS08420 () | 1730155..1731225 | - | 1071 | WP_000108917.1 | histidinol-phosphate transaminase | - |
| JGY96_RS08425 () | 1731222..1732526 | - | 1305 | WP_000009600.1 | histidinol dehydrogenase | - |
| JGY96_RS08430 () | 1732532..1733431 | - | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
| JGY96_RS08435 () | 1733577..1733627 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
| JGY96_RS08440 () | 1733910..1734182 | + | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| JGY96_RS08445 () | 1734216..1734913 | + | 698 | WP_225620301.1 | IS1 family transposase IS1X2 | Transposase |
| JGY96_RS08450 () | 1734935..1735189 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| JGY96_RS08455 () | 1735272..1736096 | + | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| JGY96_RS08460 () | 1736142..1737071 | + | 930 | WP_000803325.1 | LysR substrate-binding domain-containing protein | - |
| JGY96_RS08465 () | 1737269..1737349 | + | 81 | WP_119176036.1 | membrane protein YoeI | - |
| JGY96_RS08470 () | 1737339..1738697 | + | 1359 | WP_025758280.1 | putrescine/proton symporter PlaP | - |
| JGY96_RS08475 () | 1739408..1739409 | - | 2 | WP_153933088.1 | IS1 family transposase IS1X4 | Transposase |
| JGY96_RS08480 () | 1739711..1740709 | + | 999 | WP_032327136.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| JGY96_RS08485 () | 1740723..1740950 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| JGY96_RS08490 () | 1740993..1742417 | - | 1425 | WP_000132549.1 | exodeoxyribonuclease I | - |
| JGY96_RS08495 () | 1742526..1743446 | - | 921 | WP_254100644.1 | IS3 family transposase IS2 | Transposase |
| JGY96_RS08500 () | 1743424..1743666 | - | 243 | WP_001430949.1 | IS3 family transposase IS2 | Transposase |
| JGY96_RS08505 () | 1743935..1744828 | + | 894 | Protein_1665 | hypothetical protein ; Integrase | Integrase |
| JGY96_RS08510 () | 1744911..1745585 | + | 675 | Protein_1666 | IS66-like element accessory protein TnpA | - |
| JGY96_RS08515 () | 1745582..1745928 | + | 347 | Protein_1667 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS08520 () | 1745948..1747547 | + | 1600 | Protein_1668 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS08525 () | 1747581..1747967 | + | 387 | Protein_1669 | IS3 family transposase ISLad1 | Transposase |
| JGY96_RS08530 () | 1747975..1748753 | - | 779 | Protein_1670 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS08535 () | 1748773..1749119 | - | 347 | Protein_1671 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS08540 () | 1749116..1749789 | - | 674 | Protein_1672 | IS66-like element accessory protein TnpA | - |
| JGY96_RS08545 () | 1749874..1750158 | + | 285 | Protein_1673 | hypothetical protein | - |
| JGY96_RS08550 () | 1750330..1750659 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| JGY96_RS08555 () | 1750875..1752035 | + | 1161 | Protein_1675 | IS3 family transposase | - |
| JGY96_RS08560 () | 1752078..1752197 | - | 120 | Protein_1676 | hypothetical protein | - |
| JGY96_RS08565 () | 1752213..1752890 | - | 678 | WP_005115548.1 | hypothetical protein | - |
| JGY96_RS08570 () | 1753026..1754096 | - | 1071 | WP_025759760.1 | hypothetical protein | VF |
| JGY96_RS08575 () | 1754093..1754998 | - | 906 | WP_021528432.1 | diguanylate cyclase regulator RdcB family protein | - |
| JGY96_RS08580 () | 1754995..1756193 | - | 1199 | Protein_1680 | dGTPase | - |
| JGY96_RS08585 () | 1756240..1756917 | - | 678 | Protein_1681 | IS3 family transposase ISSd1 | Transposase |
| JGY96_RS08590 () | 1756984..1758140 | + | 1157 | Protein_1682 | IS3 family transposase ISSd1 | Transposase |
| JGY96_RS08595 () | 1758286..1759365 | - | 1080 | Protein_1683 | dynamin family protein | - |
| JGY96_RS08600 () | 1759575..1760018 | - | 444 | WP_001069642.1 | hypothetical protein | - |
| JGY96_RS08605 () | 1760533..1761375 | + | 843 | WP_000711882.1 | DUF5677 domain-containing protein | - |
| JGY96_RS08610 () | 1761482..1761745 | + | 264 | Protein_1686 | integrase | - |
| JGY96_RS08615 () | 1761880..1762068 | + | 189 | Protein_1687 | IS4 family transposase | - |
| JGY96_RS08620 () | 1762047..1762220 | + | 174 | Protein_1688 | cobalamin biosynthesis protein | - |
| JGY96_RS08625 () | 1762372..1762917 | + | 546 | WP_000973202.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| JGY96_RS08630 () | 1762914..1763657 | + | 744 | WP_025759701.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| JGY96_RS08635 () | 1763669..1764748 | + | 1080 | WP_001165578.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| JGY96_RS08640 () | 1764810..1765745 | + | 936 | WP_128861733.1 | L,D-transpeptidase | - |
| JGY96_RS08650 () | 1766203..1767087 | + | 885 | WP_119182152.1 | nitrogen assimilation transcriptional regulator NAC | - |
| JGY96_RS08655 () | 1767062..1768229 | - | 1168 | Protein_1694 | IS3 family transposase ISLad1 | Transposase |
| JGY96_RS08660 () | 1768473..1769423 | + | 951 | WP_001010995.1 | HTH-type transcriptional regulator Cbl | - |
| JGY96_RS08670 () | 1769541..1771168 | + | 1628 | Protein_1696 | toxic metabolite efflux MATE transporter YeeO | - |
| JGY96_RS08680 () | 1771800..1772516 | - | 717 | WP_000532920.1 | hypothetical protein | VF |
| JGY96_RS08685 () | 1772859..1773044 | - | 186 | Protein_1698 | AMP nucleosidase | - |
| JGY96_RS08690 () | 1773503..1773504 | - | 2 | WP_153933088.1 | IS1 family transposase IS1X1 | Transposase |
| JGY96_RS08695 () | 1773812..1775001 | - | 1190 | Protein_1700 | AMP nucleosidase | - |
| JGY96_RS08700 () | 1775014..1776240 | - | 1227 | Protein_1701 | IS3 family transposase IS2 | Transposase |
| JGY96_RS08705 () | 1776282..1776422 | - | 141 | WP_171769178.1 | hypothetical protein | - |
| JGY96_RS08710 () | 1776524..1777234 | - | 711 | Protein_1703 | MFS transporter | - |
| JGY96_RS08715 () | 1777259..1778456 | + | 1198 | Protein_1704 | IS3 family transposase ISLad1 | Transposase |
| JGY96_RS08720 () | 1778563..1779825 | - | 1263 | WP_025759341.1 | hypothetical protein ; Integrase | Integrase |
| JGY96_RS08730 () | 1780163..1780960 | - | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| JGY96_RS08740 () | 1781171..1782208 | - | 1038 | WP_004974968.1 | hypothetical protein ; Integrase | Integrase |
| JGY96_RS08745 () | 1782208..1782411 | - | 204 | WP_025759339.1 | DUF4224 domain-containing protein | - |
| JGY96_RS08750 () | 1782470..1782774 | - | 305 | Protein_1709 | 3'-5' exoribonuclease | - |
| JGY96_RS08755 () | 1783256..1783257 | - | 2 | WP_153933088.1 | IS1 family transposase IS1X4 | Transposase |
| JGY96_RS08760 () | 1783580..1783996 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 1784578..1784636 | - | 59 | - | - | Antitoxin Detail |
| JGY96_RS08765 () | 1784648..1784803 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| JGY96_RS08770 () | 1784971..1785249 | + | 279 | WP_000929754.1 | hypothetical protein | - |
| JGY96_RS08775 () | 1785251..1786309 | + | 1059 | WP_025759819.1 | DUF968 domain-containing protein | - |
| JGY96_RS08780 () | 1786310..1786675 | + | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JGY96_RS08785 () | 1786672..1787387 | + | 716 | Protein_1716 | bacteriophage antitermination protein Q | - |
| JGY96_RS08810 () | 1788183..1788398 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| JGY96_RS08815 () | 1788497..1789171 | + | 675 | WP_001088287.1 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS08820 () | 1789168..1789515 | + | 348 | WP_000631711.1 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS08825 () | 1789535..1790344 | + | 810 | Protein_1720 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS08830 () | 1790410..1791564 | + | 1155 | WP_254100647.1 | IS3 family transposase ISSd1 | Transposase |
| JGY96_RS08835 () | 1791607..1792398 | + | 792 | Protein_1722 | IS66 family transposase ISSfl3 | Transposase |
| JGY96_RS08840 () | 1792398..1792919 | + | 522 | Protein_1723 | lysozyme RrrD | - |
| JGY96_RS08845 () | 1792916..1793380 | + | 465 | WP_000092290.1 | lysis protein | - |
| JGY96_RS08850 () | 1793423..1793773 | + | 351 | WP_001139556.1 | HNH endonuclease signature motif containing protein | - |
| JGY96_RS08855 () | 1793921..1794403 | + | 483 | WP_024166447.1 | phage terminase small subunit P27 family | - |
| JGY96_RS08860 () | 1794403..1796160 | + | 1758 | WP_040235539.1 | terminase large subunit | - |
| JGY96_RS08865 () | 1796172..1796354 | + | 183 | WP_000478600.1 | hypothetical protein | - |
| JGY96_RS08870 () | 1796354..1797595 | + | 1242 | WP_000466011.1 | phage portal protein | - |
| JGY96_RS08875 () | 1797573..1798199 | + | 627 | Protein_1730 | HK97 family phage prohead protease | - |
| JGY96_RS08880 () | 1798200..1799303 | + | 1104 | Protein_1731 | phage major capsid protein | - |
| JGY96_RS08885 () | 1799348..1799671 | + | 324 | WP_000924704.1 | head-tail connector protein | - |
| JGY96_RS08890 () | 1799668..1800084 | + | 417 | WP_000702444.1 | phage head closure protein | - |
| JGY96_RS08895 () | 1800050..1800574 | + | 525 | WP_025759103.1 | hypothetical protein | - |
| JGY96_RS08900 () | 1800571..1801133 | + | 563 | Protein_1735 | hypothetical protein | - |
| JGY96_RS08905 () | 1801143..1801304 | + | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| JGY96_RS08910 () | 1801301..1802797 | + | 1497 | WP_000155744.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| JGY96_RS08915 () | 1802797..1803153 | + | 357 | WP_001062338.1 | phage tail tube protein | - |
| JGY96_RS08920 () | 1803153..1803489 | + | 337 | Protein_1739 | phage tail assembly protein | - |
| JGY96_RS08925 () | 1803574..1805523 | + | 1950 | WP_025759099.1 | phage tail tape measure protein | - |
| JGY96_RS08930 () | 1805649..1806346 | + | 698 | WP_225620297.1 | IS1 family transposase IS1X2 | Transposase |
| JGY96_RS08935 () | 1806362..1806681 | + | 320 | Protein_1742 | phage tail protein | - |
| JGY96_RS08940 () | 1806632..1807254 | + | 623 | Protein_1743 | DUF4376 domain-containing protein | - |
| JGY96_RS08945 () | 1807434..1809077 | - | 1644 | WP_032156999.1 | hypothetical protein | VF |
| JGY96_RS08950 () | 1809393..1810061 | - | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| JGY96_RS08955 () | 1810118..1810387 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| JGY96_RS08960 () | 1811465..1812115 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| JGY96_RS08965 () | 1812373..1813007 | - | 635 | Protein_1748 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| JGY96_RS08970 () | 1813008..1814012 | - | 1005 | Protein_1749 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| JGY96_RS08975 () | 1814121..1814534 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| JGY96_RS08980 () | 1814667..1815338 | + | 672 | WP_001347103.1 | hypothetical protein | VF |
| JGY96_RS08985 () | 1815338..1816696 | + | 1359 | WP_025759261.1 | two-component system sensor histidine kinase HprS | - |
| JGY96_RS08990 () | 1816804..1817655 | - | 852 | WP_000218218.1 | protein deglycase HchA | - |
| JGY96_RS08995 () | 1818144..1818145 | - | 2 | WP_254100587.1 | IS1 family transposase | - |
| JGY96_RS09000 () | 1819025..1819195 | - | 171 | Protein_1755 | porin | - |
| JGY96_RS09005 () | 1819297..1820525 | + | 1229 | WP_171763895.1 | IS3 family transposase IS2 | Transposase |
| JGY96_RS09010 () | 1820537..1821247 | - | 711 | Protein_1757 | porin | - |
| JGY96_RS09015 () | 1821364..1822511 | + | 1148 | WP_085949497.1 | IS3 family transposase ISEhe3 | Transposase |
| JGY96_RS09020 () | 1822512..1822769 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| JGY96_RS09025 () | 1822809..1823349 | + | 541 | Protein_1760 | phosphohydrolase | - |
| JGY96_RS09030 () | 1823416..1824834 | + | 1419 | WP_025758774.1 | DNA-cytosine methyltransferase | - |
| JGY96_RS09035 () | 1824815..1825285 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| JGY96_RS09040 () | 1825274..1826194 | - | 921 | WP_025758775.1 | drug/metabolite exporter YedA | - |
| JGY96_RS09045 () | 1826367..1827284 | + | 918 | WP_152030428.1 | DUF808 domain-containing protein | - |
| JGY96_RS09050 () | 1827363..1827545 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| JGY96_RS09055 () | 1827704..1828915 | - | 1212 | Protein_1766 | IS3 family transposase | - |
| JGY96_RS09060 () | 1829027..1830721 | + | 1695 | WP_119175972.1 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| JGY96_RS09065 () | 1830718..1831533 | - | 816 | Protein_1768 | mannosyl-3-phosphoglycerate phosphatase-related protein | - |
| JGY96_RS09070 () | 1831831..1832058 | - | 228 | WP_005048789.1 | peroxide/acid resistance protein YodD | - |
| JGY96_RS09075 () | 1832221..1832409 | + | 189 | WP_000867216.1 | protein DsrB | - |
| JGY96_RS09080 () | 1832453..1833076 | - | 624 | WP_000103994.1 | transcriptional regulator RcsA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|